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<h3>
Shayan Doust pushed to branch master
at <a href="https://salsa.debian.org/med-team/gneiss">Debian Med / gneiss</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/gneiss/-/commit/e9cdedc5d6e9841a7602bf0e198dfa62d551f939">e9cdedc5</a></strong>
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<span>by Shayan Doust</span>
<i>at 2020-07-09T19:29:58+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Generate sphinx HTML and manpages
</pre>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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</li>
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<h4>Changes:</h4>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/gneiss/-/commit/e9cdedc5d6e9841a7602bf0e198dfa62d551f939#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -17,13 +17,14 @@ Build-Depends: debhelper-compat (= 13),</td>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> python3-seaborn,</span>
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<td class="diff-line-num old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> python3-scipy,</span>
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<td class="diff-line-num old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> python3-statsmodels,</span>
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<td class="diff-line-num new_line old" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> python3-h5py</span>
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<td class="diff-line-num new new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> python3-h5py,</span>
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<td class="diff-line-num new new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> python3-sphinx</span>
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<td class="diff-line-num new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">Standards-Version: 4.5.0</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/gneiss</span>
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<td class="diff-line-num old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/gneiss.git</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext">Homepage: https://github.com/biocore/gneiss</span>
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<td class="diff-line-num new_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext">Package: gneiss</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext">Package: <span class="idiff left right">python3-</span>gneiss</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext">Depends: ${python3:Depends},</span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> ${misc:Depends},</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -41,3 +42,16 @@ Description: data analysis and visualisation toolbox for high dimensional propor</td>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> Canonically pronounced as 'nice', gneiss is a compositional data</span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> analysis and visualisation toolbox designed for analysing high</span>
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<td class="diff-line-num new_line" data-linenumber="44" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> dimensional proportions.</span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext">Package: python3-gneiss-doc</span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext">Architecture: all</span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext">Section: doc</span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext">Depends: ${sphinxdoc:Depends},</span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext"> ${misc:Depends}</span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext">Recommends: python3-gneiss</span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext">Description: documentation for the python3-gneiss package</span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext"> Canonically pronounced as 'nice', gneiss is a compositional data</span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"> analysis and visualisation toolbox designed for analysing high</span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> dimensional proportions.</span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext"> This package contains documentation for python3-gneiss.</span></pre>
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<br>
</li>
<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/gneiss/-/commit/e9cdedc5d6e9841a7602bf0e198dfa62d551f939#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9,8 +9,17 @@ include /usr/share/dpkg/default.mk</td>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"># export DEB_BUILD_MAINT_OPTIONS=hardening=+all</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">%:</span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> dh $@ --with python3 --buildsystem=pybuild</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dh $@ --with python3<span class="idiff left right">,sphinxdoc</span> --buildsystem=pybuild</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">override_dh_auto_build: export http_proxy=127.0.0.1:9</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">override_dh_auto_build: export https_proxy=127.0.0.1:9</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">override_dh_auto_build:</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> dh_auto_build</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> # Move test data into build directory so nosetest can use it</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> cp -rf gneiss/regression/tests/data/ .pybuild/*/build/gneiss/regression/tests/</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> # Generate sphinx documentation and manpages</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> PYTHONPATH=. python3 -m sphinx -N -bhtml doc/source/ build/html/</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> PYTHONPATH=. python3 -m sphinx -N -bman doc/source/ build/man/</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext">override_dh_missing:</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"></span></pre>
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