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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/714e80896bdf5c9af50b8546066a9142ec21a24b">714e8089</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-07-10T13:44:00+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/714e80896bdf5c9af50b8546066a9142ec21a24b#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Fri, 10 Jul 2020 <span class="idiff left right">01</span>:42:03 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Fri, 10 Jul 2020 <span class="idiff left right">13</span>:42:03 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 18<span class="idiff left right">6</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">5</span> | {covid-19,imaging,practice} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 18<span class="idiff left right">7</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">6</span> | {covid-19,imaging,practice} | </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> gdcm | 45 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 4<span class="idiff left right">3</span> | {his,practice,covid-19,laboratory,imaging,oncology} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 4<span class="idiff left right">4</span> | {his,practice,covid-19,laboratory,imaging,oncology} | </span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> htsjdk | 33 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> dicom3tools | 24 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dcm2niix | 23 | {imaging} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -16,9 +16,9 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> gdcm | 13 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> insighttoolkit4 | 13 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> invesalius | 13 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> pixelmed | 13 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> jebl2 | 12 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> minc-tools | 12 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> pixelmed | 12 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> vtk-dicom | 10 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> lagan | 9 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> libdivsufsort | 9 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -28,17 +28,18 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> king | 8 | {imaging,typesetting} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> melting | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> ngs-sdk | 8 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> orthanc-webviewer | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> plastimatch | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> psychopy | 8 | {psychology} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> dicompyler | 7 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> libminc | 7 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> librg-utils-perl | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext"> orthanc-webviewer | 7 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> orthanc-dicomweb | 7 | {imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> stacks | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> treeview | 7 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> biojava-live | 6 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> ea-utils | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="plaintext"> orthanc-dicomweb | 6 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> librg-utils-perl | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> orthanc-mysql | 6 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> paraclu | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> anfo | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> biomaj3-cli | 5 | {cloud} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -48,7 +49,9 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> mlv-smile | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> ncbi-seg | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="plaintext"> orthanc-mysql | 5 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"> orthanc-postgresql | 5 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext"> rdp-alignment | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"> rdp-readseq | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> sibsim4 | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> sigma-align | 5 | {bio-phylogeny,cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> staden | 5 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -62,19 +65,16 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> mipe | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> neobio | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> nutsqlite | 4 | {tools} | </span>
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="plaintext"> orthanc-postgresql | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> phyutility | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> piler | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> predictprotein | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> pymia | 4 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> qrisk2 | 4 | {practice} | </span>
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="plaintext"> rdp-alignment | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="plaintext"> rdp-readseq | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> scythe | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC74" class="line" lang="plaintext"> snap-aligner | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> spread-phy | 4 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> squizz | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> transtermhp | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="plaintext"> alter-sequence-alignment | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> ampliconnoise | 3 | {cloud,bio} | </span>
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79
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> bandage | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> brig | 3 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -98,6 +98,7 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000</td>
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98
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> probabel | 3 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> rdp-classifier | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="plaintext"> relion | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="plaintext"> runcircos-gui | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> saint | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> salmon | 3 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> seqmagick | 3 | {covid-19,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -105,7 +106,6 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext"> tnseq-transit | 3 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> tracetuner | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> tvc | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC108" class="line" lang="plaintext"> alter-sequence-alignment | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext"> arden | 2 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="plaintext"> assemblytics | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="plaintext"> baitfisher | 2 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -156,7 +156,6 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="plaintext"> repeatmasker-recon | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC157" class="line" lang="plaintext"> roguenarok | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="plaintext"> rtax | 2 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC159" class="line" lang="plaintext"> runcircos-gui | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC159" class="line" lang="plaintext"> samblaster | 2 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="plaintext"> samtools-legacy | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC161" class="line" lang="plaintext"> scrm | 2 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -197,7 +196,6 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000</td>
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196
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="plaintext"> trace2dbest | 1 | {bio} | </span>
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197
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="plaintext"> velvetoptimiser | 1 | {bio} | </span>
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198
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="plaintext"> volpack | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC200" class="line" lang="plaintext"> wtdbg2 | 1 | {covid-19} | </span>
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199
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="plaintext"> acedb | 0 | {cloud,bio} | </span>
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202
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200
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<pre style="margin: 0;"> <span id="LC200" class="line" lang="plaintext"> atropos | 0 | {bio} | </span>
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203
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201
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="plaintext"> augur | 0 | {covid-19,bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="253" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -253,10 +251,9 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000</td>
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253
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251
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<pre style="margin: 0;"> <span id="LC251" class="line" lang="plaintext"> parallel-fastq-dump | 0 | {covid-19} | </span>
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254
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252
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<pre style="margin: 0;"> <span id="LC252" class="line" lang="plaintext"> pbseqlib | 0 | {bio-dev} | </span>
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255
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253
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<pre style="margin: 0;"> <span id="LC253" class="line" lang="plaintext"> pilercr | 0 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC256" class="line" lang="plaintext"> python-py2bit | 0 | {bio,bio-dev} | </span>
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257
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254
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<pre style="margin: 0;"> <span id="LC254" class="line" lang="plaintext"> quicktree | 0 | {bio,covid-19,bio-phylogeny} | </span>
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258
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<pre style="margin: 0;">-<span id="LC258" class="line" lang="plaintext"> relion | 0 | {bio-dev} | </span>
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259
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255
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<pre style="margin: 0;"> <span id="LC255" class="line" lang="plaintext"> relion | 0 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC256" class="line" lang="plaintext"> relion | 0 | {bio-dev} | </span>
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257
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<pre style="margin: 0;"> <span id="LC257" class="line" lang="plaintext"> sambamba | 0 | {bio} | </span>
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258
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<pre style="margin: 0;"> <span id="LC258" class="line" lang="plaintext"> sbmltoolbox | 0 | {bio-dev} | </span>
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259
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<pre style="margin: 0;"> <span id="LC259" class="line" lang="plaintext"> seq-gen | 0 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="270" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -270,9 +267,10 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000</td>
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270
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267
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<pre style="margin: 0;"> <span id="LC267" class="line" lang="plaintext"> varna | 0 | {bio} | </span>
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271
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268
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<pre style="margin: 0;"> <span id="LC268" class="line" lang="plaintext"> varscan | 0 | {covid-19,bio} | </span>
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272
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269
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<pre style="margin: 0;"> <span id="LC269" class="line" lang="plaintext"> vtk-dicom | 0 | {imaging-dev} | </span>
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270
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<pre style="margin: 0;">+<span id="LC270" class="line" lang="plaintext"> wtdbg2 | 0 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC271" class="line" lang="plaintext"> bustools | -1 | {bio,covid-19} | </span>
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272
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<pre style="margin: 0;"> <span id="LC272" class="line" lang="plaintext"> pycoqc | -1 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC273" class="line" lang="plaintext"> shovill | -1 | {bio,covid-19} | </span>
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274
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<pre style="margin: 0;"> <span id="LC274" class="line" lang="plaintext"> yanagiba | -1 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC277" class="line" lang="plaintext">(<span class="idiff left right">301</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC275" class="line" lang="plaintext">(<span class="idiff left right">299</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC276" class="line" lang="plaintext"></span></pre>
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