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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/38d5100e4fa1deef9b2b38bfd736377876a94b44">38d5100e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-07-14T13:44:13+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
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<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/38d5100e4fa1deef9b2b38bfd736377876a94b44#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Tue, 14 Jul 2020 <span class="idiff left right">01</span>:42:03 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Tue, 14 Jul 2020 <span class="idiff left right">13</span>:42:03 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 176 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 88 | {covid-19,imaging,practice} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> gdcm | 43 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 42 | {his,practice,covid-19,laboratory,imaging,oncology} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> htsjdk | 34 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 177 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 89 | {covid-19,imaging,practice} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> gdcm | 46 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 43 | {his,practice,covid-19,laboratory,imaging,oncology} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> htsjdk | 33 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> dicom3tools | 24 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dcm2niix | 23 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> dicom<span class="idiff left right">3tools | 23</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> <span class="idiff left right">dicomscope | 21 | {imaging} </span> | </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> <span class="idiff left right">gnumed-server | 17 | {practice,covid-19}</span> | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> <span class="idiff left right">ngs-sdk | 16 | {bio-dev} </span> | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dicom<span class="idiff left right">scope | 20</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> <span class="idiff left right">gnumed-server | 18 | {practice,covid-19}</span> | </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> <span class="idiff left right">ngs-sdk | 17 | {bio-dev} </span> | </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> <span class="idiff left right">gdcm | 13 | {imaging-dev}</span> | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> invesalius | 13 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> gdcm | 12 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> insighttoolkit4 | 12 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> jebl2 | 12 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> gdcm | 11 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> minc-tools | 11 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> pixelmed | 11 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> jebl2 | 11 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> minc-tools | 10 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> pixelmed | 10 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> lagan | 9 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> libdivsufsort | 9 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> psychopy | 9 | {psychology} | </span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> vtk-dicom | 9 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> ngs-sdk | 9 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> adun.app | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> melting | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> ngs-sdk | 8 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> openslide | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> orthanc-webviewer | 8 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> psychopy | 8 | {psychology} | </span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> vtk-dicom | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> biosig4c++ | 7 | {physics,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> dicompyler | 7 | {oncology} | </span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"> <span class="idiff left right">king | 7 | {imaging,typesetting}</span> | </span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> <span class="idiff left right">openslide | 7 | {imaging} </span> | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> orthanc-dicomweb | 7 | {imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> plastimatch | 7 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> stacks | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> treeview | 7 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> biojava-live | 6 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> biomaj3-cli | 6 | {cloud} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> ea-utils | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> king | 6 | {imaging,typesetting} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> libminc | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> librg-utils-perl | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> orthanc-mysql | 6 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> paraclu | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext"> sibsim4 | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> anfo | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="plaintext"> biomaj3-cli | 5 | {cloud} | </span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> bart-view | 5 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"> biomaj3-daemon | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> fastlink | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> getdata | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> mlv-smile | 5 | {bio,cloud} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -51,12 +52,12 @@ Last-Update: Tue, 14 Jul 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> obitools | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> orthanc-postgresql | 5 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> phyutility | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> pymia | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> rdp-alignment | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> rdp-readseq | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"> sibsim4 | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> sigma-align | 5 | {bio-phylogeny,cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> zalign | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="plaintext"> bart-view | 4 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="plaintext"> biomaj3-daemon | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> elastix | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> gatb-core | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> king-probe | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -68,7 +69,6 @@ Last-Update: Tue, 14 Jul 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> nutsqlite | 4 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> piler | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> predictprotein | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="plaintext"> pymia | 4 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> qrisk2 | 4 | {practice} | </span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> scythe | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> spread-phy | 4 | {bio-phylogeny,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -179,12 +179,12 @@ Last-Update: Tue, 14 Jul 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="plaintext"> libhmsbeagle | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="plaintext"> libvistaio | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="plaintext"> logol | 1 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC182" class="line" lang="plaintext"> ngs-sdk | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC183" class="line" lang="plaintext"> opensurgsim | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC184" class="line" lang="plaintext"> oscar | 1 | {practice,tools,data} | </span>
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185
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<pre style="margin: 0;"> <span id="LC185" class="line" lang="plaintext"> pbcopper | 1 | {bio-dev} | </span>
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186
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="plaintext"> phipack | 1 | {bio} | </span>
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187
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="plaintext"> plasmidseeker | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC187" class="line" lang="plaintext"> python-scitrack | 1 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC188" class="line" lang="plaintext"> q2templates | 1 | {bio} | </span>
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189
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189
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<pre style="margin: 0;"> <span id="LC189" class="line" lang="plaintext"> rambo-k | 1 | {bio} | </span>
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<td class="diff-line-num old_line" data-linenumber="190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
190
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190
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<pre style="margin: 0;"> <span id="LC190" class="line" lang="plaintext"> relion | 1 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="244" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="244" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -244,7 +244,6 @@ Last-Update: Tue, 14 Jul 2020 01:42:03 +0000</td>
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244
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="plaintext"> mssstest | 0 | {tools} | </span>
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245
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="plaintext"> murasaki | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="plaintext"> nanosv | 0 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC247" class="line" lang="plaintext"> ngs-sdk | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC247" class="line" lang="plaintext"> opencfu | 0 | {laboratory} | </span>
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<pre style="margin: 0;"> <span id="LC248" class="line" lang="plaintext"> orthanc-imagej | 0 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="plaintext"> papyrus | 0 | {imaging-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -272,5 +271,5 @@ Last-Update: Tue, 14 Jul 2020 01:42:03 +0000</td>
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271
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<pre style="margin: 0;"> <span id="LC271" class="line" lang="plaintext"> pycoqc | -1 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC272" class="line" lang="plaintext"> shovill | -1 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC273" class="line" lang="plaintext"> yanagiba | -1 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC275" class="line" lang="plaintext">(29<span class="idiff left right">9</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC274" class="line" lang="plaintext">(29<span class="idiff left right">8</span> rows)</span>
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