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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/bcftools">Debian Med / bcftools</a>
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<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcftools/-/commit/603e4aa4b6d03b751a62862b992fac049fdcbabf">603e4aa4</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-07-14T22:20:54+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix suggested Python packages
</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/bcftools/-/commit/80e49cc0913fa9a384c071ee3a341881fa3e6d84">80e49cc0</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-07-14T22:38:57+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Make sure Python3 is used
</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/bcftools/-/commit/f6cbc84068345edae26d10749a1048081bb85415">f6cbc840</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-07-14T22:42:11+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
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<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#555c85016bd79aa8bbb523506af81b69d9c69534">
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+
debian/patches/2to3.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/bcftools/-/compare/460295209687734c243be802d3052b31241f3896...f6cbc84068345edae26d10749a1048081bb85415#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">bcftools (1.10.2-4) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Fix suggested Python packages</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> Closes: #965032</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Tue, 14 Jul 2020 22:39:24 +0200</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">bcftools (1.10.2-3) unstable; urgency=medium</span>
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> * Team upload.</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/bcftools/-/compare/460295209687734c243be802d3052b31241f3896...f6cbc84068345edae26d10749a1048081bb85415#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -25,9 +25,9 @@ Depends: ${shlibs:Depends},</td>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext">Recommends: perl</span>
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<td class="diff-line-num old_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext">Suggests:</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"># These are needed for plot-vcfstats</span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> python,</span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> python-numpy,</span>
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<td class="diff-line-num old old_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"> python-matplotlib,</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> python<span class="idiff left right">3</span>,</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> python<span class="idiff left right">3</span>-numpy,</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> python<span class="idiff left right">3</span>-matplotlib,</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> texlive-latex-recommended</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext">Breaks: samtools (<< 1.0)</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext">Replaces: samtools (<< 1.0)</span>
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<a href="https://salsa.debian.org/med-team/bcftools/-/compare/460295209687734c243be802d3052b31241f3896...f6cbc84068345edae26d10749a1048081bb85415#555c85016bd79aa8bbb523506af81b69d9c69534"><strong>debian/patches/2to3.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Last-Update: Tue, 14 Jul 2020 22:21:56 +0200</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Bug-Debian: https://bugs.debian.org/965032</span></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Description: Make sure Python3 is used</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff">diff --git a/misc/guess-ploidy.py b/misc/guess-ploidy.py</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gh" style="color: #999;">index 6ad3d36..6792498 100755</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/misc/guess-ploidy.py</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/misc/guess-ploidy.py</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/env python3</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> #</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> # Plot the output of "bcftools +guess-ploidy -v"</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> #</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="p">@@ -24,7 +24,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> # FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> # DEALINGS IN THE SOFTWARE.</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-from __future__ import print_function</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"> import matplotlib as mpl</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> mpl.use('Agg')</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"><span class="gh" style="color: #999;">diff --git a/misc/plot-roh.py b/misc/plot-roh.py</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"><span class="gh" style="color: #999;">index 90dd63e..210f086 100755</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/misc/plot-roh.py</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/misc/plot-roh.py</span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/env python3</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"> # </span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"> # The MIT License</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"> # </span></pre>
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<a href="https://salsa.debian.org/med-team/bcftools/-/compare/460295209687734c243be802d3052b31241f3896...f6cbc84068345edae26d10749a1048081bb85415#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">tests-pluginpath.patch</span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">skip_new_test_failing_on_32bit.patch</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">2to3.patch</span></pre>
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