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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/71992b42d44f767fcfdd492882ac5693b109c122">71992b42</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-07-15T13:44:23+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/71992b42d44f767fcfdd492882ac5693b109c122#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 15 Jul 2020 <span class="idiff left right">01</span>:42:03 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 15 Jul 2020 <span class="idiff left right">13</span>:42:03 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">7</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 8<span class="idiff left right">9</span> | {covid-19,imaging,practice} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> gdcm | 4<span class="idiff left right">6</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 4<span class="idiff left right">3</span> | {his,practice,covid-19,laboratory,imaging,oncology} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> htsjdk | 3<span class="idiff left right">3</span> | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> d<span class="idiff left right">icom3tools | 24</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> d<span class="idiff left right">cm2niix | 23</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">6</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 8<span class="idiff left right">8</span> | {covid-19,imaging,practice} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> gdcm | 4<span class="idiff left right">7</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 4<span class="idiff left right">2</span> | {his,practice,covid-19,laboratory,imaging,oncology} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> htsjdk | 3<span class="idiff left right">2</span> | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> d<span class="idiff left right">cm2niix | 22</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> d<span class="idiff left right">icom3tools | 22</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> dicomscope | 20 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> gnumed-server | 18 | {practice,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> ngs-sdk | 17 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> gdcm | 13 | {<span class="idiff left right">imaging-dev} </span> | </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> gdcm | 13 | {<span class="idiff left right">covid-19,imaging}</span> | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> invesalius | 13 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> gdcm | 12 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> insighttoolkit4 | 12 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> gdcm | 11 | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> jebl2 | 11 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> pixelmed | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> minc-tools | 10 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> pixelmed | 10 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> ngs-sdk | 10 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> adun.app | 9 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> lagan | 9 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> <span class="idiff left right">libdivsufsort | 9 | {bio-dev} </span> | </span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> <span class="idiff left right">ngs-sdk | 9 | {bio-dev</span>} | </span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> <span class="idiff left right">adun.app | 8 | {bio} </span> | </span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> <span class="idiff left right">psychopy | 9 | {psychology}</span> | </span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> <span class="idiff left right">vtk-dicom | 9 | {imaging</span>} | </span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> <span class="idiff left right">libdivsufsort | 8 | {bio-dev}</span> | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> melting | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> openslide | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> orthanc-webviewer | 8 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> psychopy | 8 | {psychology} | </span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> vtk-dicom | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> biosig4c++ | 7 | {physics,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"> dicompyler | 7 | {oncology} | </span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext"> openslide | 7 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> libminc | 7 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> orthanc-dicomweb | 7 | {imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> plastimatch | 7 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> stacks | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> treeview | 7 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> biojava-live | 6 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> biomaj3-cli | 6 | {cloud} | </span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> dicompyler | 6 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> ea-utils | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> king | 6 | {imaging,typesetting} | </span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="plaintext"> libminc | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> librg-utils-perl | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> orthanc-mysql | 6 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> paraclu | 6 | {cloud,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -69,7 +69,6 @@ Last-Update: Wed, 15 Jul 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> nutsqlite | 4 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> piler | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> predictprotein | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="plaintext"> qrisk2 | 4 | {practice} | </span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> scythe | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> spread-phy | 4 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> squizz | 4 | {bio,cloud} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -96,6 +95,7 @@ Last-Update: Wed, 15 Jul 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext"> placnet | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext"> proalign | 3 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext"> probabel | 3 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="plaintext"> qrisk2 | 3 | {practice} | </span>
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99
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> rdp-classifier | 3 | {bio} | </span>
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100
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="plaintext"> relion | 3 | {bio} | </span>
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101
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> runcircos-gui | 3 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -111,6 +111,7 @@ Last-Update: Wed, 15 Jul 2020 01:42:03 +0000</td>
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111
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="plaintext"> beast2-mcmc | 2 | {bio} | </span>
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112
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112
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="plaintext"> beast-mcmc | 2 | {bio-phylogeny,bio} | </span>
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113
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="plaintext"> bio-rainbow | 2 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="plaintext"> biosig4c++ | 2 | {physics,imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="plaintext"> bio-tradis | 2 | {bio-dev,bio} | </span>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="plaintext"> bitseq | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="plaintext"> blasr | 2 | {bio,bio-ngs} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="122" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -122,7 +123,6 @@ Last-Update: Wed, 15 Jul 2020 01:42:03 +0000</td>
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123
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="plaintext"> dazzdb | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="plaintext"> delly | 2 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="plaintext"> dindel | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC125" class="line" lang="plaintext"> dwgsim | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="plaintext"> estscan | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="plaintext"> fastml | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="plaintext"> fsm-lite | 2 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="168" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -168,6 +168,7 @@ Last-Update: Wed, 15 Jul 2020 01:42:03 +0000</td>
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168
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="plaintext"> surankco | 2 | {bio} | </span>
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169
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="plaintext"> sweed | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="plaintext"> yaha | 2 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="plaintext"> acedb | 1 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC172" class="line" lang="plaintext"> biosig4c++ | 1 | {physics,imaging-dev} | </span>
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173
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<pre style="margin: 0;"> <span id="LC173" class="line" lang="plaintext"> blimps | 1 | {bio} | </span>
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173
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174
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<pre style="margin: 0;"> <span id="LC174" class="line" lang="plaintext"> cat-bat | 1 | {bio,covid-19} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="195" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -195,7 +196,6 @@ Last-Update: Wed, 15 Jul 2020 01:42:03 +0000</td>
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195
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196
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="plaintext"> trace2dbest | 1 | {bio} | </span>
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196
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197
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="plaintext"> velvetoptimiser | 1 | {bio} | </span>
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197
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198
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="plaintext"> volpack | 1 | {imaging-dev} | </span>
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198
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<pre style="margin: 0;">-<span id="LC198" class="line" lang="plaintext"> acedb | 0 | {cloud,bio} | </span>
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199
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199
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="plaintext"> atropos | 0 | {bio} | </span>
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200
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200
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<pre style="margin: 0;"> <span id="LC200" class="line" lang="plaintext"> augur | 0 | {covid-19,bio} | </span>
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<td class="diff-line-num old_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
201
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201
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="plaintext"> bambamc | 0 | {bio-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="251" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="251" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -251,8 +251,8 @@ Last-Update: Wed, 15 Jul 2020 01:42:03 +0000</td>
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251
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251
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<pre style="margin: 0;"> <span id="LC251" class="line" lang="plaintext"> pbseqlib | 0 | {bio-dev} | </span>
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252
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252
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<pre style="margin: 0;"> <span id="LC252" class="line" lang="plaintext"> pilercr | 0 | {bio} | </span>
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253
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253
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<pre style="margin: 0;"> <span id="LC253" class="line" lang="plaintext"> quicktree | 0 | {bio,covid-19,bio-phylogeny} | </span>
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254
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<pre style="margin: 0;">-<span id="LC254" class="line" lang="plaintext"> relion | 0 | {bio} | </span>
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255
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254
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<pre style="margin: 0;"> <span id="LC254" class="line" lang="plaintext"> relion | 0 | {bio-dev} | </span>
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255
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<pre style="margin: 0;">+<span id="LC255" class="line" lang="plaintext"> relion | 0 | {bio} | </span>
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256
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256
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<pre style="margin: 0;"> <span id="LC256" class="line" lang="plaintext"> sambamba | 0 | {bio} | </span>
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257
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257
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<pre style="margin: 0;"> <span id="LC257" class="line" lang="plaintext"> sbmltoolbox | 0 | {bio-dev} | </span>
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258
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258
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<pre style="margin: 0;"> <span id="LC258" class="line" lang="plaintext"> seq-gen | 0 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="268" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="268" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -268,8 +268,9 @@ Last-Update: Wed, 15 Jul 2020 01:42:03 +0000</td>
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268
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268
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<pre style="margin: 0;"> <span id="LC268" class="line" lang="plaintext"> vtk-dicom | 0 | {imaging-dev} | </span>
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269
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269
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<pre style="margin: 0;"> <span id="LC269" class="line" lang="plaintext"> wtdbg2 | 0 | {covid-19} | </span>
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270
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270
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<pre style="margin: 0;"> <span id="LC270" class="line" lang="plaintext"> bustools | -1 | {bio,covid-19} | </span>
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<td class="diff-line-num new new_line" data-linenumber="271" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
271
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<pre style="margin: 0;">+<span id="LC271" class="line" lang="plaintext"> pplacer | -1 | {bio-phylogeny,covid-19,bio} | </span>
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271
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272
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<pre style="margin: 0;"> <span id="LC272" class="line" lang="plaintext"> pycoqc | -1 | {covid-19,bio} | </span>
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272
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<pre style="margin: 0;"> <span id="LC273" class="line" lang="plaintext"> shovill | -1 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC274" class="line" lang="plaintext"> yanagiba | -1 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC274" class="line" lang="plaintext">(29<span class="idiff left right">8</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC275" class="line" lang="plaintext">(29<span class="idiff left right">9</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC276" class="line" lang="plaintext"></span></pre>
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