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<h3>
Aaron M. Ucko pushed to branch master
at <a href="https://salsa.debian.org/med-team/ncbi-entrez-direct">Debian Med / ncbi-entrez-direct</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/bbe0173f7380ce65499c1be43707d293da7ca90f">bbe0173f</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-07-13T22:12:51-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 13.7.20200713+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/8582cc64fceeac4844efe702dbea9a78479feb9d">8582cc64</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-07-13T22:13:42-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'upstream/13.7.20200713+dfsg'
Upstream version 13.7.20200713(+dfsg).
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/b2e48ab9a846063de4bd180595f30696c68a039d">b2e48ab9</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-07-14T21:39:17-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/rules: Install accn-at-a-time and g2x; update gbf2xml's handling.
Account for new as-is script accn-at-a-time, new Go executable g2x,
and gbf2xml's switch from a Perl script to an as-is script (wrapping
xtract).
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/6e84fc59324d3b31240b958f9594f56e0dbec534">6e84fc59</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-07-14T22:07:30-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/rules: Belatedly arrange to tweak enquire.
Its --ca* options won't do here.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/984a1b063f619c9f5243aee0f516b3518b13fa12">984a1b06</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-07-14T22:15:47-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/man: Update for new upstream release (13.7.20200713[+dfsg]).
* accn-at-a-time.1, g2x.1: Document new commands.
* gbf2xml.1: Turn into an alias for xtract.1.
* xtract.1: Document -g2x flag (under Data Conversion) and
corresponding gbf2xml executable.
* Update SEE ALSO references accordingly.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/3ff79da3f1d0d11d2976f414edfd56adcf372b89">3ff79da3</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-07-14T22:17:16-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Finalize ncbi-entrez-direct 13.7.20200713+dfsg-1 for unstable.
</pre>
</li>
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<h4>15 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#eef09dbd652775adf0a6e9e977e6f04e1efc7266">
<span class="new-file">
+
accn-at-a-time
</span>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#435c6c90f7a57930a46cb7262342e96184a23f0f">
<span class="new-file">
+
debian/man/accn-at-a-time.1
</span>
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<li class="file-stats">
<a href="#e6f345de4fd295d6f6f5f07d2a95ae385450e992">
<span class="new-file">
+
debian/man/g2x.1
</span>
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<li class="file-stats">
<a href="#479365981cee26484156e41e35daaa0e65bff582">
debian/man/gbf2xml.1
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<li class="file-stats">
<a href="#901074985b5da08faf926f9ed91a406c2d4f2b57">
debian/man/word-at-a-time.1
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<li class="file-stats">
<a href="#c60765c1b932f4071ad43fe9aed248d0db4baa61">
debian/man/xtract.1
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<li class="file-stats">
<a href="#14e2a0edcbe66cf001a0866e14d15a3a5e9ddf1f">
enquire
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<li class="file-stats">
<a href="#5d41ecff815f6d9ed179ea07ed522b822b9802c8">
<span class="new-file">
+
g2x.go
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<li class="file-stats">
<a href="#a3bf962e151b57ecc4bab8772c24123436f0bf1b">
gbf2xml
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<li class="file-stats">
<a href="#f555edcfb71bb400c39b45118f326189205574d8">
hlp-xtract.txt
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<li class="file-stats">
<a href="#00d70479e6392030e74da19a0fce67470c1e0e0e">
sort-uniq-count
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<li class="file-stats">
<a href="#8f39bf8ecc07c02566ff31855c6b4c2b4e9d23ae">
sort-uniq-count-rank
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<li class="file-stats">
<a href="#96f5584f0d6dcaca2b56481ad25dbd045758ed30">
xtract.go
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="eef09dbd652775adf0a6e9e977e6f04e1efc7266">
<a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/compare/36914b997fe7b6f71dbe208a0f2e29e2ca47f056...3ff79da3f1d0d11d2976f414edfd56adcf372b89#eef09dbd652775adf0a6e9e977e6f04e1efc7266"><strong>accn-at-a-time</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/bash -norc</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="shell"><span class="nb" style="color: #0086b3;">sed</span> <span class="s1" style="color: #d14;">'s/[^a-zA-Z0-9_.]/ /g; s/^ *//'</span> |</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="shell"><span class="nb" style="color: #0086b3;">tr</span> <span class="s1" style="color: #d14;">'A-Z'</span> <span class="s1" style="color: #d14;">'a-z'</span> |</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="shell"><span class="nb" style="color: #0086b3;">fmt</span> <span class="nt" style="color: #000080;">-w</span> 1</span></pre>
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<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/compare/36914b997fe7b6f71dbe208a0f2e29e2ca47f056...3ff79da3f1d0d11d2976f414edfd56adcf372b89#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">ncbi-entrez-direct (13.7.20200713+dfsg-1) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * New upstream release.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * debian/man/{accn-at-a-time,g2x}.1: Document new commands.</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * debian/man/{gbf2xml,word-at-a-time,xtract}.1: Update for new release.</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * debian/rules:</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> - Account for new as-is script accn-at-a-time, new Go executable g2x, and</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> gbf2xml's switch from a Perl script to an as-is script (wrapping xtract).</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> - Belatedly arrange to tweak enquire, whose --ca* options won't do here.</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> -- Aaron M. Ucko <ucko@debian.org> Tue, 14 Jul 2020 22:17:15 -0400</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">ncbi-entrez-direct (13.7.20200615+dfsg-2) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> * debian/rules: Install ftp-cp, ftp-ls, nquire, and transmute as simple</span>
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<a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/compare/36914b997fe7b6f71dbe208a0f2e29e2ca47f056...3ff79da3f1d0d11d2976f414edfd56adcf372b89#435c6c90f7a57930a46cb7262342e96184a23f0f"><strong>debian/man/accn-at-a-time.1</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">.TH ACCN-AT-A-TIME 1 2020-07-14 NCBI "NCBI Entrez Direct User's Manual"</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">.SH NAME</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">accn\-at\-a\-time \- parse an input file into biological identifiers</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">.SH SYNOPSIS</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">.B accn\-at\-a\-time</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">.SH DESCRIPTION</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">\fBaccn\-at\-a\-time\fP reads a text file on standard input,</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">extracts all sequences of</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">digits, English letters, underscores, and periods,</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">lowercases any capital letters,</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">and prints the resulting terms in order, one per line.</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">.SH SEE ALSO</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">.BR word\-at\-a\-time (1).</span></pre>
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<a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/compare/36914b997fe7b6f71dbe208a0f2e29e2ca47f056...3ff79da3f1d0d11d2976f414edfd56adcf372b89#e6f345de4fd295d6f6f5f07d2a95ae385450e992"><strong>debian/man/g2x.1</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">.TH G2X 1 2020-07-14 NCBI "NCBI Entrez Direct User's Manual"</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">.SH NAME</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">g2x \- Convert GenBank flatfiles to INSDSeq XML</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">.SH SYNOPSIS</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">.B g2x</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">[\|\fB\-input\fP\ \fIfilename\fP\|]</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">[\|\fB\-output\fP\ \fIfilename\fP\|]</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">.SH DESCRIPTION</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">\fBgbf2xml\fP reads the specified GenBank flatfile</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">and writes a corresponding INSDSeq XML document.</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">.SH OPTIONS</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">.TP</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">\fB\-input\fP\ \fIfilename\fP</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">Read GenBank format from file instead of stdin.</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">.TP</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">\fB\-output\fP\ \fIfilename\fP</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">Write INSDSeq XML to file instead of stdout.</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">.SH SEE ALSO</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">.BR asn2ff (1),</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">.BR asn2gb (1),</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">.BR gbf2xml (1).</span></pre>
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<a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/compare/36914b997fe7b6f71dbe208a0f2e29e2ca47f056...3ff79da3f1d0d11d2976f414edfd56adcf372b89#479365981cee26484156e41e35daaa0e65bff582"><strong>debian/man/gbf2xml.1</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">.TH GBF2XML 1 2017-07-05 NCBI "NCBI Entrez Direct User's Manual"</span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">.SH NAME</span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">gbf2xml \- Convert GenBank flatfiles to INSDSeq XML</span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">.SH SYNOPSIS</span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">.B gbf2xml</span>
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6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">[\|\fIfilename\fP\|]</span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">.SH DESCRIPTION</span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">\fBgbf2xml\fP reads the specified GenBank flatfile</span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">(or from standard input when not passed a filename)</span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">and writes a corresponding INSDSeq XML document</span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">to standard output.</span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext">.SH BUGS</span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext">Feature intervals that refer to 'far' locations, i.e., those not within</span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext">the cited record and which have an accession and colon, are suppressed.</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext">Those rare features (e.g., trans\-splicing between molecules) are lost.</span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext">Keywords and References are currently not supported.</span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext">.SH SEE ALSO</span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext">.BR asn2ff (1),</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext">.BR asn2gb (1),</span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext">.BR xtract (1).</span></pre>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">.so xtract.1</span></pre>
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<a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/compare/36914b997fe7b6f71dbe208a0f2e29e2ca47f056...3ff79da3f1d0d11d2976f414edfd56adcf372b89#901074985b5da08faf926f9ed91a406c2d4f2b57"><strong>debian/man/word-at-a-time.1</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">.TH WORD-AT-A-TIME 1 20<span class="idiff left right">17-01-2</span>4 NCBI "NCBI Entrez Direct User's Manual"</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">.TH WORD-AT-A-TIME 1 20<span class="idiff left right">20-07-1</span>4 NCBI "NCBI Entrez Direct User's Manual"</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">.SH NAME</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">word\-at\-a\-time \- parse an input file into alphanumeric words</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">.SH SYNOPSIS</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9,4 +9,5 @@ extracts all sequences of digits and English letters,</td>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">lowercases any capital letters,</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">and prints the resulting terms in order, one per line.</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">.SH SEE ALSO</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">.BR accn\-at\-a\-time (1),</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">.BR join\-into\-groups\-of (1).</span></pre>
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<a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/compare/36914b997fe7b6f71dbe208a0f2e29e2ca47f056...3ff79da3f1d0d11d2976f414edfd56adcf372b89#c60765c1b932f4071ad43fe9aed248d0db4baa61"><strong>debian/man/xtract.1</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">.TH XTRACT 1 2020-0<span class="idiff left right">6-28</span> NCBI "NCBI Entrez Direct User's Manual"</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">.TH XTRACT 1 2020-0<span class="idiff left right">7-14</span> NCBI "NCBI Entrez Direct User's Manual"</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">.SH NAME</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"><span class="idiff left right">xtract \- convert XML into a table of data values</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"><span class="idiff left right">gbf2xml, xtract \- NCBI Entrez Direct XML conversion and transformation tool</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">.SH SYNOPSIS</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">\fBxtract\fP</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">[\|\fB\-help\fP\|]</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="125" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="125" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -125,12 +125,18 @@ xtract \- convert XML into a table of data values</td>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="plaintext">[\|\fB\-t2x\fP [\|\fB\-set\fP\ \fItag\fP\|] [\|\fB\-rec\fP\ \fItag\fP\|] \</span>
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="plaintext">[\|\fB\-skip\fP\ \fIN\fP\|] [\|\fB\-lower\fP|\fB\-upper\fP\|] \</span>
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="plaintext">[\|\fB\-indent\fP|\fB\-flush\fP\|] \fIcolumnName1\fP\ ...\|]</span>
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="plaintext">[\|\fB\-g2x\fP\|]</span>
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="plaintext">[\|\fB\-examples\fP\|]</span>
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="plaintext">[\|\fB\-version\fP\|]</span>
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="plaintext">\fBgbf2xml\fP\ ...</span>
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="plaintext">.SH DESCRIPTION</span>
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext">\fBxtract\fP converts an XML document</span>
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext">into a table of data values</span>
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext">according to user\-specified rules.</span>
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="plaintext">\fBgbf2xml\fP converts from GenBank flatfile format to INSDSeq XML,</span>
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="plaintext">and is equivalent to \fBxtract \-g2x\fP.</span>
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="plaintext">.SH OPTIONS</span>
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="plaintext">.SS Processing Flags</span>
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext">.TP</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="716" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="722" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -716,6 +722,9 @@ Do not indent XML output.</td>
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716
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<pre style="margin: 0;"> <span id="LC722" class="line" lang="plaintext">XML object names per column.</span>
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723
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<pre style="margin: 0;"> <span id="LC723" class="line" lang="plaintext">.RE</span>
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718
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<pre style="margin: 0;"> <span id="LC724" class="line" lang="plaintext">.PD</span>
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<pre style="margin: 0;">+<span id="LC725" class="line" lang="plaintext">.TP</span>
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<pre style="margin: 0;">+<span id="LC726" class="line" lang="plaintext">\fB\-g2x\fP</span>
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<pre style="margin: 0;">+<span id="LC727" class="line" lang="plaintext">Convert GenBank flatfile format to INSDSeq XML.</span>
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728
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<pre style="margin: 0;"> <span id="LC728" class="line" lang="plaintext">.SS Documentation</span>
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729
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<pre style="margin: 0;"> <span id="LC729" class="line" lang="plaintext">.TP</span>
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730
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<pre style="margin: 0;"> <span id="LC730" class="line" lang="plaintext">\fB\-help\fP</span>
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<a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/compare/36914b997fe7b6f71dbe208a0f2e29e2ca47f056...3ff79da3f1d0d11d2976f414edfd56adcf372b89#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -17,22 +17,25 @@ MODES = address blast citmatch contact filter link notify post proxy search \</td>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">STD_WRAPPERS = $(MODES:%=bin/e%)</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">OTHER_WRAPPERS = esummary ftp-cp ftp-ls nquire transmute</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">WRAPPERS = $(STD_WRAPPERS) $(OTHER_WRAPPERS:%=bin/%)</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext">AS_IS_SCRIPTS = amino-acid-composition archive-pubmed between-two-genes \</span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> enquire entrez-phrase-search esample exclude-uid-lists \</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> expand-current fetch-extras fetch-pubmed filter-stop-words \</span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> index-pubmed intersect-uid-lists join-into-groups-of pm-* \</span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> protein-neighbors reorder-columns sort-uniq-count* \</span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> stream-pubmed theme-aliases word-at-a-time xml2tbl xy-plot</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">AS_IS_SCRIPTS = accn-at-a-time amino-acid-composition archive-pubmed \</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> between-two-genes entrez-phrase-search esample \</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> exclude-uid-lists expand-current fetch-extras fetch-pubmed \</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> filter-stop-words gbf2xml index-pubmed intersect-uid-lists \</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> join-into-groups-of pm-* protein-neighbors reorder-columns \</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> sort-uniq-count* stream-pubmed theme-aliases word-at-a-time \</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> xml2tbl xy-plot</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext">BASH_SCRIPTS = index-extras index-themes</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext">BIN_BASH_SCRIPTS = $(BASH_SCRIPTS:%=bin/%)</span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext">DL_SCRIPTS = download-ncbi-data download-pubmed download-sequence</span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext">BIN_DL_SCRIPTS = $(DL_SCRIPTS:%=bin/%)</span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext">PERL_SCRIPTS = edirutil <span class="idiff left right">gbf2xml </span>run-ncbi-converter</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext">PERL_SCRIPTS = edirutil run-ncbi-converter</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext">BIN_PERL_SCRIPTS = $(PERL_SCRIPTS:%=bin/%)</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"># Only bt-link and xplore need this treatment at present,</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"># but list all bt-* scripts to be safe.</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext">BT_SCRIPTS = bt-link bt-load bt-save bt-srch xplore</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext">BIN_BT_SCRIPTS = $(BT_SCRIPTS:%=bin/%)</span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext">OTHER_SCRIPTS = enquire</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext">BIN_OTHER_SCRIPTS = $(OTHER_SCRIPTS:%=bin/%)</span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext">FIX_PERL_SHEBANG = 1s,^\#!/usr/bin/env perl$$,\#!/usr/bin/perl,</span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext">FIX_BASH_SHEBANG = 1s,^\#!/bin/sh,\#!/bin/bash,</span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="50" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -50,7 +53,7 @@ export GOCACHE = $(CURDIR)/go-build</td>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext">export GOPATH = $(CURDIR)/obj-$(DEB_HOST_GNU_TYPE)</span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext">GOLIBS = $(GOLIBSRC:$(GOCODE)/%=$(GOPATH)/%)</span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="plaintext">GO_APPS = j2x rchive t2x xtract</span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext">GO_APPS = <span class="idiff left right">g2x </span>j2x rchive t2x xtract</span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext">BIN_GO_APPS = $(GO_APPS:%=bin/%)</span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext">GOVERSION := $(word 3,$(shell go version)) # go version **goX.Y.Z** OS/CPU</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="77" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -77,6 +80,11 @@ $(STD_WRAPPERS): bin/e%: bin/edirect</td>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> echo 'exec /usr/bin/edirect -$* "$$@"' >> $@</span>
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81
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> chmod +x $@</span>
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79
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82
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="83" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="plaintext">bin/enquire: enquire</span>
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<td class="diff-line-num new new_line" data-linenumber="84" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="plaintext"> mkdir -p bin</span>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="plaintext"> sed -e 's/ --ca.*\.pem//' $< > $@</span>
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<td class="diff-line-num new new_line" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="plaintext"> chmod +x $@</span>
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87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="plaintext"></span>
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80
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88
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext">bin/esummary: bin/edirect</span>
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<td class="diff-line-num old_line" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
81
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<td class="diff-line-num new_line" data-linenumber="89" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
89
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"> echo '#!/bin/sh' > $@</span>
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82
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<td class="diff-line-num new_line" data-linenumber="90" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
90
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> echo 'exec /usr/bin/edirect -fetch -format docsum "$$@"' >> $@</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -127,6 +135,7 @@ $(GOPATH)/src/$(GH)/fiam/gounidecode: $(GOLIBS)</td>
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<td class="diff-line-num old_line" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
127
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135
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> ln -s ../rainycape $(GOPATH)/src/$(GH)/fiam/gounidecode</span>
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<td class="diff-line-num old_line" data-linenumber="128" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
128
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<td class="diff-line-num new_line" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
136
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"></span>
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<td class="diff-line-num old_line" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
129
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137
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext">COMMON = common.go</span>
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<td class="diff-line-num new old_line" data-linenumber="130" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="plaintext">bin/g2x: COMMON = </span>
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130
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139
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="plaintext">bin/j2x: COMMON = </span>
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131
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<td class="diff-line-num new_line" data-linenumber="140" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
140
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="plaintext">bin/t2x: COMMON = </span>
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132
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<td class="diff-line-num new_line" data-linenumber="141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
141
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="plaintext">$(BIN_GO_APPS): bin/%: %.go $(GOPATH)/src/$(GH)/fiam/gounidecode</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -139,7 +148,8 @@ override_dh_auto_configure:</td>
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139
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148
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="plaintext"> -mv go.mod go.sum s2p.go saved/</span>
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140
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<td class="diff-line-num new_line" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
149
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="plaintext"></span>
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<td class="diff-line-num old_line" data-linenumber="141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
141
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<td class="diff-line-num new_line" data-linenumber="150" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
150
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="plaintext">override_dh_auto_build: $(WRAPPERS) $(BIN_BASH_SCRIPTS) $(BIN_DL_SCRIPTS) \</span>
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<td class="diff-line-num old old_line" data-linenumber="142" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
142
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<td class="diff-line-num new_line old" data-linenumber="151" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC142" class="line" lang="plaintext"> $(BIN_PERL_SCRIPTS) $(BIN_BT_SCRIPTS) $(BIN_GO_APPS)</span>
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<td class="diff-line-num new old_line" data-linenumber="143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="151" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
151
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="plaintext"> $(BIN_PERL_SCRIPTS) $(BIN_BT_SCRIPTS) \</span>
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<td class="diff-line-num new old_line" data-linenumber="143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="152" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="plaintext"> $(BIN_OTHER_SCRIPTS) $(BIN_GO_APPS)</span>
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<td class="diff-line-num old_line" data-linenumber="143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
143
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<td class="diff-line-num new_line" data-linenumber="153" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
153
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<pre style="margin: 0;"> <span id="LC153" class="line" lang="plaintext"> dh_auto_build</span>
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<td class="diff-line-num old_line" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
144
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154
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<pre style="margin: 0;"> <span id="LC154" class="line" lang="plaintext"> install $(AS_IS_SCRIPTS) debian/efetch debian/einfo bin/</span>
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155
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<pre style="margin: 0;"> <span id="LC155" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/compare/36914b997fe7b6f71dbe208a0f2e29e2ca47f056...3ff79da3f1d0d11d2976f414edfd56adcf372b89#14e2a0edcbe66cf001a0866e14d15a3a5e9ddf1f"><strong>enquire</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -222,10 +222,60 @@ do</td>
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="shell"> <span class="k" style="font-weight: 600;">esac</span></span>
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="shell"><span class="k" style="font-weight: 600;">done</span></span>
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224
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC225" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># get extraction method</span></span>
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<pre style="margin: 0;">+<span id="LC225" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># subset of perl -MURI::Escape -ne 'chomp;print uri_escape($_),"\n"'</span></span>
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<pre style="margin: 0;">+<span id="LC226" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC227" class="line" lang="shell">Escape<span class="o" style="font-weight: 600;">()</span> <span class="o" style="font-weight: 600;">{</span></span>
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<pre style="margin: 0;">+<span id="LC228" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$1</span><span class="s2" style="color: #d14;">"</span> |</span>
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<pre style="margin: 0;">+<span id="LC229" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">sed</span> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s/%/%25/g"</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC230" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s/!/%21/g"</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC231" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s/#/%23/g"</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC232" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s/&/%26/g"</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC233" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s/'/%27/g"</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC234" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s/*/%2A/g"</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC235" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s/+/%2B/g"</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC236" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s/,/%2C/g"</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC237" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s|/|%2F|g"</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC238" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s/:/%3A/g"</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC239" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s/;/%3B/g"</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC240" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s/=/%3D/g"</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC241" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s/?/%3F/g"</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC242" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s/@/%40/g"</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC243" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s/|/%7C/g"</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC244" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s/ /%20/g"</span> |</span>
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<pre style="margin: 0;">+<span id="LC245" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">sed</span> <span class="nt" style="color: #000080;">-e</span> <span class="s1" style="color: #d14;">'s/\$/%24/g'</span> <span class="se" style="color: #d14;">\</span></span>
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246
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<pre style="margin: 0;">+<span id="LC246" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s1" style="color: #d14;">'s/(/%28/g'</span> <span class="se" style="color: #d14;">\</span></span>
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247
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<pre style="margin: 0;">+<span id="LC247" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s1" style="color: #d14;">'s/)/%29/g'</span> <span class="se" style="color: #d14;">\</span></span>
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248
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<pre style="margin: 0;">+<span id="LC248" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s1" style="color: #d14;">'s/</%3C/g'</span> <span class="se" style="color: #d14;">\</span></span>
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249
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<pre style="margin: 0;">+<span id="LC249" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s1" style="color: #d14;">'s/>/%3E/g'</span> <span class="se" style="color: #d14;">\</span></span>
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250
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<pre style="margin: 0;">+<span id="LC250" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s1" style="color: #d14;">'s/\[/%5B/g'</span> <span class="se" style="color: #d14;">\</span></span>
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251
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<pre style="margin: 0;">+<span id="LC251" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s1" style="color: #d14;">'s/\]/%5D/g'</span> <span class="se" style="color: #d14;">\</span></span>
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252
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<pre style="margin: 0;">+<span id="LC252" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s1" style="color: #d14;">'s/\^/%5E/g'</span> <span class="se" style="color: #d14;">\</span></span>
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253
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<pre style="margin: 0;">+<span id="LC253" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s1" style="color: #d14;">'s/{/%7B/g'</span> <span class="se" style="color: #d14;">\</span></span>
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254
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<pre style="margin: 0;">+<span id="LC254" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s1" style="color: #d14;">'s/}/%7D/g'</span></span>
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255
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<pre style="margin: 0;">+<span id="LC255" class="line" lang="shell"><span class="o" style="font-weight: 600;">}</span></span>
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256
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<pre style="margin: 0;">+<span id="LC256" class="line" lang="shell"></span>
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257
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<pre style="margin: 0;">+<span id="LC257" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># initialize variables</span></span>
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226
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258
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<pre style="margin: 0;"> <span id="LC258" class="line" lang="shell"></span>
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227
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259
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<pre style="margin: 0;"> <span id="LC259" class="line" lang="shell"><span class="nv" style="color: #008080;">mode</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">""</span></span>
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228
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260
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<pre style="margin: 0;"> <span id="LC260" class="line" lang="shell"></span>
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261
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<pre style="margin: 0;">+<span id="LC261" class="line" lang="shell"><span class="nv" style="color: #008080;">url</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">""</span></span>
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262
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<pre style="margin: 0;">+<span id="LC262" class="line" lang="shell"><span class="nv" style="color: #008080;">sls</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">""</span></span>
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263
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<pre style="margin: 0;">+<span id="LC263" class="line" lang="shell"></span>
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264
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<pre style="margin: 0;">+<span id="LC264" class="line" lang="shell"><span class="nv" style="color: #008080;">arg</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">""</span></span>
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265
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<pre style="margin: 0;">+<span id="LC265" class="line" lang="shell"><span class="nv" style="color: #008080;">amp</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">""</span></span>
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266
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<pre style="margin: 0;">+<span id="LC266" class="line" lang="shell"><span class="nv" style="color: #008080;">cmd</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">""</span></span>
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267
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<pre style="margin: 0;">+<span id="LC267" class="line" lang="shell"><span class="nv" style="color: #008080;">pfx</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">""</span></span>
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268
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<pre style="margin: 0;">+<span id="LC268" class="line" lang="shell"></span>
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269
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<pre style="margin: 0;">+<span id="LC269" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># optionally include nextra.sh script, if present, for internal NCBI maintenance functions (undocumented)</span></span>
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270
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<pre style="margin: 0;">+<span id="LC270" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># dot command is equivalent of "source"</span></span>
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271
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<pre style="margin: 0;">+<span id="LC271" class="line" lang="shell"></span>
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272
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<pre style="margin: 0;">+<span id="LC272" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="nt" style="color: #000080;">-f</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$pth</span><span class="s2" style="color: #d14;">"</span>/nextra.sh <span class="o" style="font-weight: 600;">]</span></span>
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273
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<pre style="margin: 0;">+<span id="LC273" class="line" lang="shell"><span class="k" style="font-weight: 600;">then</span></span>
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274
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<pre style="margin: 0;">+<span id="LC274" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">.</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$pth</span><span class="s2" style="color: #d14;">"</span>/nextra.sh</span>
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275
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<pre style="margin: 0;">+<span id="LC275" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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276
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<pre style="margin: 0;">+<span id="LC276" class="line" lang="shell"></span>
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277
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<pre style="margin: 0;">+<span id="LC277" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># get extraction method</span></span>
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278
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<pre style="margin: 0;">+<span id="LC278" class="line" lang="shell"></span>
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229
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279
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<pre style="margin: 0;"> <span id="LC279" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="nv" style="color: #008080;">$# </span><span class="nt" style="color: #000080;">-gt</span> 0 <span class="o" style="font-weight: 600;">]</span></span>
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230
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280
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<pre style="margin: 0;"> <span id="LC280" class="line" lang="shell"><span class="k" style="font-weight: 600;">then</span></span>
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231
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281
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<pre style="margin: 0;"> <span id="LC281" class="line" lang="shell"><span class="k" style="font-weight: 600;"> case</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$1</span><span class="s2" style="color: #d14;">"</span> <span class="k" style="font-weight: 600;">in</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="247" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="297" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -247,9 +297,6 @@ fi</td>
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247
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297
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<pre style="margin: 0;"> <span id="LC297" class="line" lang="shell"></span>
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248
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298
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<pre style="margin: 0;"> <span id="LC298" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># collect URL directory components</span></span>
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249
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299
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<pre style="margin: 0;"> <span id="LC299" class="line" lang="shell"></span>
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250
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<pre style="margin: 0;">-<span id="LC250" class="line" lang="shell"><span class="nv" style="color: #008080;">url</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">""</span></span>
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251
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<pre style="margin: 0;">-<span id="LC251" class="line" lang="shell"><span class="nv" style="color: #008080;">sls</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">""</span></span>
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252
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<pre style="margin: 0;">-<span id="LC252" class="line" lang="shell"></span>
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300
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<pre style="margin: 0;"> <span id="LC300" class="line" lang="shell"><span class="k" style="font-weight: 600;">while</span> <span class="o" style="font-weight: 600;">[</span> <span class="nv" style="color: #008080;">$# </span><span class="nt" style="color: #000080;">-gt</span> 0 <span class="o" style="font-weight: 600;">]</span></span>
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254
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301
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<pre style="margin: 0;"> <span id="LC301" class="line" lang="shell"><span class="k" style="font-weight: 600;">do</span></span>
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255
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<td class="diff-line-num new_line" data-linenumber="302" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
302
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<pre style="margin: 0;"> <span id="LC302" class="line" lang="shell"><span class="k" style="font-weight: 600;"> case</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$1</span><span class="s2" style="color: #d14;">"</span> <span class="k" style="font-weight: 600;">in</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="268" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="315" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -268,45 +315,8 @@ do</td>
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268
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315
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<pre style="margin: 0;"> <span id="LC315" class="line" lang="shell"> <span class="k" style="font-weight: 600;">esac</span></span>
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269
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316
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<pre style="margin: 0;"> <span id="LC316" class="line" lang="shell"><span class="k" style="font-weight: 600;">done</span></span>
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270
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317
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<pre style="margin: 0;"> <span id="LC317" class="line" lang="shell"></span>
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271
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<pre style="margin: 0;">-<span id="LC271" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># subset of perl -MURI::Escape -ne 'chomp;print uri_escape($_),"\n"'</span></span>
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272
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<pre style="margin: 0;">-<span id="LC272" class="line" lang="shell"></span>
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273
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<pre style="margin: 0;">-<span id="LC273" class="line" lang="shell">Escape<span class="o" style="font-weight: 600;">()</span> <span class="o" style="font-weight: 600;">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="274" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
274
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<pre style="margin: 0;">-<span id="LC274" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$1</span><span class="s2" style="color: #d14;">"</span> |</span>
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275
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<pre style="margin: 0;">-<span id="LC275" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">sed</span> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s/%/%25/g"</span> <span class="se" style="color: #d14;">\</span></span>
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276
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<pre style="margin: 0;">-<span id="LC276" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s/!/%21/g"</span> <span class="se" style="color: #d14;">\</span></span>
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<td class="diff-line-num old old_line" data-linenumber="277" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
277
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<pre style="margin: 0;">-<span id="LC277" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s/#/%23/g"</span> <span class="se" style="color: #d14;">\</span></span>
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<td class="diff-line-num old old_line" data-linenumber="278" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
278
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<pre style="margin: 0;">-<span id="LC278" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s/&/%26/g"</span> <span class="se" style="color: #d14;">\</span></span>
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<td class="diff-line-num old old_line" data-linenumber="279" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC279" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s/'/%27/g"</span> <span class="se" style="color: #d14;">\</span></span>
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<td class="diff-line-num old old_line" data-linenumber="280" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
280
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<pre style="margin: 0;">-<span id="LC280" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s/*/%2A/g"</span> <span class="se" style="color: #d14;">\</span></span>
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281
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<pre style="margin: 0;">-<span id="LC281" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s/+/%2B/g"</span> <span class="se" style="color: #d14;">\</span></span>
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282
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<pre style="margin: 0;">-<span id="LC282" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s/,/%2C/g"</span> <span class="se" style="color: #d14;">\</span></span>
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283
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<pre style="margin: 0;">-<span id="LC283" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s|/|%2F|g"</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">-<span id="LC284" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s/:/%3A/g"</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">-<span id="LC285" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s/;/%3B/g"</span> <span class="se" style="color: #d14;">\</span></span>
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<td class="diff-line-num old old_line" data-linenumber="286" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC286" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s/=/%3D/g"</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">-<span id="LC287" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s/?/%3F/g"</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">-<span id="LC288" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s/@/%40/g"</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">-<span id="LC289" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s/|/%7C/g"</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">-<span id="LC290" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"s/ /%20/g"</span> |</span>
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<pre style="margin: 0;">-<span id="LC291" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">sed</span> <span class="nt" style="color: #000080;">-e</span> <span class="s1" style="color: #d14;">'s/\$/%24/g'</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">-<span id="LC292" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s1" style="color: #d14;">'s/(/%28/g'</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">-<span id="LC293" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s1" style="color: #d14;">'s/)/%29/g'</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">-<span id="LC294" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s1" style="color: #d14;">'s/</%3C/g'</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">-<span id="LC295" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s1" style="color: #d14;">'s/>/%3E/g'</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">-<span id="LC296" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s1" style="color: #d14;">'s/\[/%5B/g'</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">-<span id="LC297" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s1" style="color: #d14;">'s/\]/%5D/g'</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">-<span id="LC298" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s1" style="color: #d14;">'s/\^/%5E/g'</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">-<span id="LC299" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s1" style="color: #d14;">'s/{/%7B/g'</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">-<span id="LC300" class="line" lang="shell"> <span class="nt" style="color: #000080;">-e</span> <span class="s1" style="color: #d14;">'s/}/%7D/g'</span></span>
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<pre style="margin: 0;">-<span id="LC301" class="line" lang="shell"><span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;">-<span id="LC302" class="line" lang="shell"></span>
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318
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<pre style="margin: 0;"> <span id="LC318" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># collect argument tags paired with (escaped) values</span></span>
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304
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319
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<pre style="margin: 0;"> <span id="LC319" class="line" lang="shell"></span>
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305
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<pre style="margin: 0;">-<span id="LC305" class="line" lang="shell"><span class="nv" style="color: #008080;">arg</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">""</span></span>
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306
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<pre style="margin: 0;">-<span id="LC306" class="line" lang="shell"><span class="nv" style="color: #008080;">amp</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">""</span></span>
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307
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<pre style="margin: 0;">-<span id="LC307" class="line" lang="shell"><span class="nv" style="color: #008080;">cmd</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">""</span></span>
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308
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<pre style="margin: 0;">-<span id="LC308" class="line" lang="shell"><span class="nv" style="color: #008080;">pfx</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">""</span></span>
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309
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<pre style="margin: 0;">-<span id="LC309" class="line" lang="shell"></span>
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310
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320
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<pre style="margin: 0;"> <span id="LC320" class="line" lang="shell"><span class="k" style="font-weight: 600;">while</span> <span class="o" style="font-weight: 600;">[</span> <span class="nv" style="color: #008080;">$# </span><span class="nt" style="color: #000080;">-gt</span> 0 <span class="o" style="font-weight: 600;">]</span></span>
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<pre style="margin: 0;"> <span id="LC321" class="line" lang="shell"><span class="k" style="font-weight: 600;">do</span></span>
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<pre style="margin: 0;"> <span id="LC322" class="line" lang="shell"><span class="k" style="font-weight: 600;"> case</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$1</span><span class="s2" style="color: #d14;">"</span> <span class="k" style="font-weight: 600;">in</span></span>
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<a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/compare/36914b997fe7b6f71dbe208a0f2e29e2ca47f056...3ff79da3f1d0d11d2976f414edfd56adcf372b89#5d41ecff815f6d9ed179ea07ed522b822b9802c8"><strong>g2x.go</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// ===========================================================================</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">//</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// PUBLIC DOMAIN NOTICE</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// National Center for Biotechnology Information (NCBI)</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">//</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// This software/database is a "United States Government Work" under the</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// terms of the United States Copyright Act. It was written as part of</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// the author's official duties as a United States Government employee and</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// thus cannot be copyrighted. This software/database is freely available</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// to the public for use. The National Library of Medicine and the U.S.</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// Government do not place any restriction on its use or reproduction.</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// We would, however, appreciate having the NCBI and the author cited in</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// any work or product based on this material.</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">//</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// Although all reasonable efforts have been taken to ensure the accuracy</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// and reliability of the software and data, the NLM and the U.S.</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// Government do not and cannot warrant the performance or results that</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// may be obtained by using this software or data. The NLM and the U.S.</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// Government disclaim all warranties, express or implied, including</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// warranties of performance, merchantability or fitness for any particular</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// purpose.</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">//</span></span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// ===========================================================================</span></span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">//</span></span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// File Name: g2x.go</span></span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">//</span></span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// Author: Jonathan Kans</span></span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">//</span></span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// ==========================================================================</span></span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="go"></span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">/*</span></span>
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32
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;"> Compile application by running:</span></span>
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33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="go"></span>
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34
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;"> go build g2x.go</span></span>
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35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">*/</span></span>
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36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="go"></span>
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37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="go"><span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">main</span></span>
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38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="go"></span>
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39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="go"><span class="k" style="font-weight: 600;">import</span> <span class="p">(</span></span>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="go"> <span class="s" style="color: #d14;">"bufio"</span></span>
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41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="go"> <span class="s" style="color: #d14;">"fmt"</span></span>
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42
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="go"> <span class="s" style="color: #d14;">"html"</span></span>
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<td class="diff-line-num new new_line" data-linenumber="43" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
43
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="go"> <span class="s" style="color: #d14;">"io"</span></span>
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44
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="go"> <span class="s" style="color: #d14;">"os"</span></span>
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45
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="go"> <span class="s" style="color: #d14;">"runtime"</span></span>
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46
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="go"> <span class="s" style="color: #d14;">"runtime/debug"</span></span>
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47
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="go"> <span class="s" style="color: #d14;">"strings"</span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="go"> <span class="s" style="color: #d14;">"time"</span></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="go"> <span class="s" style="color: #d14;">"unicode"</span></span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="go"><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="go"><span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">g2xHelp</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">`</span></span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="go"><span class="s" style="color: #d14;">Data Files</span></span>
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54
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="go"></span>
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55
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="go"><span class="s" style="color: #d14;"> -input Read GenBank format from file instead of stdin</span></span>
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56
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="go"><span class="s" style="color: #d14;"> -output Write INSDSeq XML to file instead of stdout</span></span>
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57
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="go"></span>
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58
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="go"><span class="s" style="color: #d14;">`</span></span>
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59
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// global variables, initialized (recursively) to "zero value" of type</span></span>
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61
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="go"><span class="k" style="font-weight: 600;">var</span> <span class="p">(</span></span>
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62
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="go"> <span class="n" style="color: #333;">ByteCount</span> <span class="kt" style="color: #458; font-weight: 600;">int</span></span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="go"> <span class="n" style="color: #333;">ChanDepth</span> <span class="kt" style="color: #458; font-weight: 600;">int</span></span>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="go"> <span class="n" style="color: #333;">InBlank</span> <span class="p">[</span><span class="m" style="color: #099;">256</span><span class="p">]</span><span class="kt" style="color: #458; font-weight: 600;">bool</span></span>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="go"> <span class="n" style="color: #333;">InElement</span> <span class="p">[</span><span class="m" style="color: #099;">256</span><span class="p">]</span><span class="kt" style="color: #458; font-weight: 600;">bool</span></span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="go"><span class="p">)</span></span>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// init function(s) run after creation of variables, before main function</span></span>
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69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="go"><span class="k" style="font-weight: 600;">func</span> <span class="n" style="color: #333;">init</span><span class="p">()</span> <span class="p">{</span></span>
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70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// set communication channel buffer size</span></span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="go"> <span class="n" style="color: #333;">ChanDepth</span> <span class="o" style="font-weight: 600;">=</span> <span class="m" style="color: #099;">16</span></span>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="go"></span>
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74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// range iterates over all elements of slice</span></span>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">InBlank</span> <span class="p">{</span></span>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// (would already have been zeroed at creation in this case)</span></span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="go"> <span class="n" style="color: #333;">InBlank</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">false</span></span>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="go"> <span class="p">}</span></span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="go"> <span class="n" style="color: #333;">InBlank</span><span class="p">[</span><span class="sc" style="color: #d14;">' '</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="go"> <span class="n" style="color: #333;">InBlank</span><span class="p">[</span><span class="sc" style="color: #d14;">'\t'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="go"> <span class="n" style="color: #333;">InBlank</span><span class="p">[</span><span class="sc" style="color: #d14;">'\n'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="go"> <span class="n" style="color: #333;">InBlank</span><span class="p">[</span><span class="sc" style="color: #d14;">'\r'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="go"> <span class="n" style="color: #333;">InBlank</span><span class="p">[</span><span class="sc" style="color: #d14;">'\f'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="go"></span>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">InElement</span> <span class="p">{</span></span>
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86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// (would already have been zeroed at creation in this case)</span></span>
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87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="go"> <span class="n" style="color: #333;">InElement</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">false</span></span>
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88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="go"> <span class="p">}</span></span>
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89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">ch</span> <span class="o" style="font-weight: 600;">:=</span> <span class="sc" style="color: #d14;">'A'</span><span class="p">;</span> <span class="n" style="color: #333;">ch</span> <span class="o" style="font-weight: 600;"><=</span> <span class="sc" style="color: #d14;">'Z'</span><span class="p">;</span> <span class="n" style="color: #333;">ch</span><span class="o" style="font-weight: 600;">++</span> <span class="p">{</span></span>
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90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="go"> <span class="n" style="color: #333;">InElement</span><span class="p">[</span><span class="n" style="color: #333;">ch</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="go"> <span class="p">}</span></span>
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92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">ch</span> <span class="o" style="font-weight: 600;">:=</span> <span class="sc" style="color: #d14;">'a'</span><span class="p">;</span> <span class="n" style="color: #333;">ch</span> <span class="o" style="font-weight: 600;"><=</span> <span class="sc" style="color: #d14;">'z'</span><span class="p">;</span> <span class="n" style="color: #333;">ch</span><span class="o" style="font-weight: 600;">++</span> <span class="p">{</span></span>
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93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="go"> <span class="n" style="color: #333;">InElement</span><span class="p">[</span><span class="n" style="color: #333;">ch</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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<td class="diff-line-num new new_line" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="go"> <span class="p">}</span></span>
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95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">ch</span> <span class="o" style="font-weight: 600;">:=</span> <span class="sc" style="color: #d14;">'0'</span><span class="p">;</span> <span class="n" style="color: #333;">ch</span> <span class="o" style="font-weight: 600;"><=</span> <span class="sc" style="color: #d14;">'9'</span><span class="p">;</span> <span class="n" style="color: #333;">ch</span><span class="o" style="font-weight: 600;">++</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="go"> <span class="n" style="color: #333;">InElement</span><span class="p">[</span><span class="n" style="color: #333;">ch</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="98" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="go"> <span class="n" style="color: #333;">InElement</span><span class="p">[</span><span class="sc" style="color: #d14;">'_'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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<td class="diff-line-num new new_line" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="go"> <span class="n" style="color: #333;">InElement</span><span class="p">[</span><span class="sc" style="color: #d14;">'-'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="go"> <span class="n" style="color: #333;">InElement</span><span class="p">[</span><span class="sc" style="color: #d14;">'.'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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<td class="diff-line-num new new_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="go"> <span class="n" style="color: #333;">InElement</span><span class="p">[</span><span class="sc" style="color: #d14;">':'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="go"><span class="p">}</span></span>
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103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="go"><span class="k" style="font-weight: 600;">func</span> <span class="n" style="color: #333;">CompressRunsOfSpaces</span><span class="p">(</span><span class="n" style="color: #333;">str</span> <span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">)</span> <span class="kt" style="color: #458; font-weight: 600;">string</span> <span class="p">{</span></span>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="go"> <span class="n" style="color: #333;">whiteSpace</span> <span class="o" style="font-weight: 600;">:=</span> <span class="no" style="color: #008080;">false</span></span>
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<td class="diff-line-num new new_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="go"> <span class="k" style="font-weight: 600;">var</span> <span class="n" style="color: #333;">buffer</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Builder</span></span>
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108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">_</span><span class="p">,</span> <span class="n" style="color: #333;">ch</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">str</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">ch</span> <span class="o" style="font-weight: 600;"><</span> <span class="m" style="color: #099;">127</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">InBlank</span><span class="p">[</span><span class="n" style="color: #333;">ch</span><span class="p">]</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">whiteSpace</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="go"> <span class="n" style="color: #333;">buffer</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteRune</span><span class="p">(</span><span class="sc" style="color: #d14;">' '</span><span class="p">)</span></span>
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113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="114" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="go"> <span class="n" style="color: #333;">whiteSpace</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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<td class="diff-line-num new new_line" data-linenumber="115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="go"> <span class="n" style="color: #333;">buffer</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteRune</span><span class="p">(</span><span class="n" style="color: #333;">ch</span><span class="p">)</span></span>
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117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="go"> <span class="n" style="color: #333;">whiteSpace</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">false</span></span>
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118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="go"> <span class="p">}</span></span>
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119
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="go"> <span class="p">}</span></span>
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120
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="go"></span>
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121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="go"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">buffer</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">String</span><span class="p">()</span></span>
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122
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="go"><span class="p">}</span></span>
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123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="go"></span>
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124
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="go"><span class="k" style="font-weight: 600;">func</span> <span class="n" style="color: #333;">IsAllDigits</span><span class="p">(</span><span class="n" style="color: #333;">str</span> <span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">)</span> <span class="kt" style="color: #458; font-weight: 600;">bool</span> <span class="p">{</span></span>
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125
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="go"></span>
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126
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">_</span><span class="p">,</span> <span class="n" style="color: #333;">ch</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">str</span> <span class="p">{</span></span>
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127
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">unicode</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">IsDigit</span><span class="p">(</span><span class="n" style="color: #333;">ch</span><span class="p">)</span> <span class="p">{</span></span>
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128
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="go"> <span class="k" style="font-weight: 600;">return</span> <span class="no" style="color: #008080;">false</span></span>
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129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="go"> <span class="p">}</span></span>
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130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="go"> <span class="p">}</span></span>
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131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="go"></span>
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132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="go"> <span class="k" style="font-weight: 600;">return</span> <span class="no" style="color: #008080;">true</span></span>
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133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="go"><span class="p">}</span></span>
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134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="go"></span>
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135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// GenBankConverter sends INSDSeq XML records down a channel</span></span>
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136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="go"><span class="k" style="font-weight: 600;">func</span> <span class="n" style="color: #333;">GenBankConverter</span><span class="p">(</span><span class="n" style="color: #333;">inp</span> <span class="n" style="color: #333;">io</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Reader</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><-</span><span class="k" style="font-weight: 600;">chan</span> <span class="kt" style="color: #458; font-weight: 600;">string</span> <span class="p">{</span></span>
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137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="go"></span>
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138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">inp</span> <span class="o" style="font-weight: 600;">==</span> <span class="no" style="color: #008080;">nil</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
139
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="go"> <span class="k" style="font-weight: 600;">return</span> <span class="no" style="color: #008080;">nil</span></span>
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140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="go"> <span class="p">}</span></span>
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141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="go"></span>
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142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="go"> <span class="n" style="color: #333;">out</span> <span class="o" style="font-weight: 600;">:=</span> <span class="nb" style="color: #0086b3;">make</span><span class="p">(</span><span class="k" style="font-weight: 600;">chan</span> <span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">,</span> <span class="n" style="color: #333;">ChanDepth</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">out</span> <span class="o" style="font-weight: 600;">==</span> <span class="no" style="color: #008080;">nil</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
144
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">"Unable to create GenBank converter channel</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="go"> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Exit</span><span class="p">(</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="go"> <span class="p">}</span></span>
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147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="go"></span>
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148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="go"> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">twelvespaces</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">" "</span></span>
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149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="go"> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">twentyonespaces</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">" "</span></span>
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150
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="151" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
151
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="go"> <span class="k" style="font-weight: 600;">var</span> <span class="n" style="color: #333;">rec</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Builder</span></span>
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<td class="diff-line-num new new_line" data-linenumber="152" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="go"> <span class="k" style="font-weight: 600;">var</span> <span class="n" style="color: #333;">con</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Builder</span></span>
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153
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="go"> <span class="k" style="font-weight: 600;">var</span> <span class="n" style="color: #333;">seq</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Builder</span></span>
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154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="go"></span>
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155
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="go"> <span class="n" style="color: #333;">scanr</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">bufio</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">NewScanner</span><span class="p">(</span><span class="n" style="color: #333;">inp</span><span class="p">)</span></span>
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156
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="go"></span>
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157
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="go"> <span class="n" style="color: #333;">convertGenBank</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">func</span><span class="p">(</span><span class="n" style="color: #333;">inp</span> <span class="n" style="color: #333;">io</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Reader</span><span class="p">,</span> <span class="n" style="color: #333;">out</span> <span class="k" style="font-weight: 600;">chan</span><span class="o" style="font-weight: 600;"><-</span> <span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">)</span> <span class="p">{</span></span>
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158
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
159
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// close channel when all records have been sent</span></span>
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<td class="diff-line-num new new_line" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
160
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<pre style="margin: 0;">+<span id="LC160" class="line" lang="go"> <span class="k" style="font-weight: 600;">defer</span> <span class="nb" style="color: #0086b3;">close</span><span class="p">(</span><span class="n" style="color: #333;">out</span><span class="p">)</span></span>
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161
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="go"></span>
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162
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="go"> <span class="n" style="color: #333;">row</span> <span class="o" style="font-weight: 600;">:=</span> <span class="m" style="color: #099;">0</span></span>
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163
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="go"></span>
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164
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="go"> <span class="n" style="color: #333;">nextLine</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">func</span><span class="p">()</span> <span class="kt" style="color: #458; font-weight: 600;">string</span> <span class="p">{</span></span>
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165
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="go"></span>
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166
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">scanr</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Scan</span><span class="p">()</span> <span class="p">{</span></span>
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167
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="go"> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">scanr</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Text</span><span class="p">()</span></span>
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168
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">""</span> <span class="p">{</span></span>
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169
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="go"> <span class="k" style="font-weight: 600;">continue</span></span>
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170
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="go"> <span class="p">}</span></span>
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171
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="go"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">line</span></span>
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172
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<pre style="margin: 0;">+<span id="LC172" class="line" lang="go"> <span class="p">}</span></span>
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173
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="go"> <span class="k" style="font-weight: 600;">return</span> <span class="s" style="color: #d14;">""</span></span>
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174
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="go"></span>
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175
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<pre style="margin: 0;">+<span id="LC175" class="line" lang="go"> <span class="p">}</span></span>
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176
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="go"></span>
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177
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="p">{</span></span>
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178
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="go"></span>
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179
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<pre style="margin: 0;">+<span id="LC179" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Reset</span><span class="p">()</span></span>
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180
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<pre style="margin: 0;">+<span id="LC180" class="line" lang="go"></span>
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181
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<pre style="margin: 0;">+<span id="LC181" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// read first line of next record</span></span>
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182
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<pre style="margin: 0;">+<span id="LC182" class="line" lang="go"> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">nextLine</span><span class="p">()</span></span>
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183
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<pre style="margin: 0;">+<span id="LC183" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">""</span> <span class="p">{</span></span>
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184
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<pre style="margin: 0;">+<span id="LC184" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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185
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<pre style="margin: 0;">+<span id="LC185" class="line" lang="go"> <span class="p">}</span></span>
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186
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<pre style="margin: 0;">+<span id="LC186" class="line" lang="go"></span>
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187
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<pre style="margin: 0;">+<span id="LC187" class="line" lang="go"> <span class="n" style="color: #333;">row</span><span class="o" style="font-weight: 600;">++</span></span>
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188
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<pre style="margin: 0;">+<span id="LC188" class="line" lang="go"></span>
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189
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<pre style="margin: 0;">+<span id="LC189" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
190
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<pre style="margin: 0;">+<span id="LC190" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"LOCUS"</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
191
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<pre style="margin: 0;">+<span id="LC191" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// skip release file header information</span></span>
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192
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<pre style="margin: 0;">+<span id="LC192" class="line" lang="go"> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">nextLine</span><span class="p">()</span></span>
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193
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<pre style="margin: 0;">+<span id="LC193" class="line" lang="go"> <span class="n" style="color: #333;">row</span><span class="o" style="font-weight: 600;">++</span></span>
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194
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<pre style="margin: 0;">+<span id="LC194" class="line" lang="go"> <span class="k" style="font-weight: 600;">continue</span></span>
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195
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="go"> <span class="p">}</span></span>
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196
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<pre style="margin: 0;">+<span id="LC196" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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197
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<pre style="margin: 0;">+<span id="LC197" class="line" lang="go"> <span class="p">}</span></span>
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198
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<pre style="margin: 0;">+<span id="LC198" class="line" lang="go"></span>
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199
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<pre style="margin: 0;">+<span id="LC199" class="line" lang="go"> <span class="n" style="color: #333;">readContinuationLines</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">func</span><span class="p">(</span><span class="n" style="color: #333;">str</span> <span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">)</span> <span class="kt" style="color: #458; font-weight: 600;">string</span> <span class="p">{</span></span>
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200
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<pre style="margin: 0;">+<span id="LC200" class="line" lang="go"></span>
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201
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<pre style="margin: 0;">+<span id="LC201" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="202" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
202
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<pre style="margin: 0;">+<span id="LC202" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// read next line</span></span>
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<td class="diff-line-num new new_line" data-linenumber="203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
203
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<pre style="margin: 0;">+<span id="LC203" class="line" lang="go"> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">nextLine</span><span class="p">()</span></span>
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204
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<pre style="margin: 0;">+<span id="LC204" class="line" lang="go"> <span class="n" style="color: #333;">row</span><span class="o" style="font-weight: 600;">++</span></span>
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<td class="diff-line-num new new_line" data-linenumber="205" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
205
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<pre style="margin: 0;">+<span id="LC205" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="n" style="color: #333;">twelvespaces</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="206" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
206
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<pre style="margin: 0;">+<span id="LC206" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// if not continuation line, break out of loop</span></span>
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<td class="diff-line-num new new_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
207
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<pre style="margin: 0;">+<span id="LC207" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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<td class="diff-line-num new new_line" data-linenumber="208" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
208
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<pre style="margin: 0;">+<span id="LC208" class="line" lang="go"> <span class="p">}</span></span>
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209
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<pre style="margin: 0;">+<span id="LC209" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// append subsequent line and continue with loop</span></span>
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210
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<pre style="margin: 0;">+<span id="LC210" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="n" style="color: #333;">twelvespaces</span><span class="p">)</span></span>
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211
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<pre style="margin: 0;">+<span id="LC211" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">+=</span> <span class="s" style="color: #d14;">" "</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">txt</span></span>
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212
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<pre style="margin: 0;">+<span id="LC212" class="line" lang="go"> <span class="p">}</span></span>
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213
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<pre style="margin: 0;">+<span id="LC213" class="line" lang="go"></span>
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214
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<pre style="margin: 0;">+<span id="LC214" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">CompressRunsOfSpaces</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">)</span></span>
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215
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<pre style="margin: 0;">+<span id="LC215" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">)</span></span>
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216
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<pre style="margin: 0;">+<span id="LC216" class="line" lang="go"></span>
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217
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<pre style="margin: 0;">+<span id="LC217" class="line" lang="go"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">str</span></span>
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218
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<pre style="margin: 0;">+<span id="LC218" class="line" lang="go"> <span class="p">}</span></span>
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219
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<pre style="margin: 0;">+<span id="LC219" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC220" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">func</span><span class="p">(</span><span class="n" style="color: #333;">spaces</span><span class="p">,</span> <span class="n" style="color: #333;">tag</span><span class="p">,</span> <span class="n" style="color: #333;">value</span> <span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">)</span> <span class="p">{</span></span>
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221
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<pre style="margin: 0;">+<span id="LC221" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC222" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="n" style="color: #333;">spaces</span><span class="p">)</span></span>
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223
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<pre style="margin: 0;">+<span id="LC223" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">"<"</span><span class="p">)</span></span>
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224
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<pre style="margin: 0;">+<span id="LC224" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="n" style="color: #333;">tag</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC225" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">">"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC226" class="line" lang="go"> <span class="n" style="color: #333;">value</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">html</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">EscapeString</span><span class="p">(</span><span class="n" style="color: #333;">value</span><span class="p">)</span></span>
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227
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<pre style="margin: 0;">+<span id="LC227" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="n" style="color: #333;">value</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC228" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">"</"</span><span class="p">)</span></span>
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229
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<pre style="margin: 0;">+<span id="LC229" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="n" style="color: #333;">tag</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC230" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">"></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC231" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC232" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC233" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// each section will exit with the next line ready to process</span></span>
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234
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<pre style="margin: 0;">+<span id="LC234" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC235" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"LOCUS"</span><span class="p">)</span> <span class="p">{</span></span>
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236
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<pre style="margin: 0;">+<span id="LC236" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC237" class="line" lang="go"> <span class="n" style="color: #333;">cols</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fields</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">)</span></span>
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238
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<pre style="margin: 0;">+<span id="LC238" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">cols</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="m" style="color: #099;">8</span> <span class="p">{</span></span>
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239
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<pre style="margin: 0;">+<span id="LC239" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC240" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// start of record</span></span>
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<pre style="margin: 0;">+<span id="LC241" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDSeq></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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242
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<pre style="margin: 0;">+<span id="LC242" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC243" class="line" lang="go"> <span class="n" style="color: #333;">moleculetype</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">cols</span><span class="p">[</span><span class="m" style="color: #099;">4</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC244" class="line" lang="go"> <span class="n" style="color: #333;">strandedness</span> <span class="o" style="font-weight: 600;">:=</span> <span class="s" style="color: #d14;">""</span></span>
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<pre style="margin: 0;">+<span id="LC245" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">moleculetype</span><span class="p">,</span> <span class="s" style="color: #d14;">"ds-"</span><span class="p">)</span> <span class="p">{</span></span>
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246
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<pre style="margin: 0;">+<span id="LC246" class="line" lang="go"> <span class="n" style="color: #333;">moleculetype</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">moleculetype</span><span class="p">,</span> <span class="s" style="color: #d14;">"ds-"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="247" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC247" class="line" lang="go"> <span class="n" style="color: #333;">strandedness</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"double"</span></span>
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<td class="diff-line-num new new_line" data-linenumber="248" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
248
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<pre style="margin: 0;">+<span id="LC248" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">moleculetype</span><span class="p">,</span> <span class="s" style="color: #d14;">"ss-"</span><span class="p">)</span> <span class="p">{</span></span>
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249
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<pre style="margin: 0;">+<span id="LC249" class="line" lang="go"> <span class="n" style="color: #333;">moleculetype</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">moleculetype</span><span class="p">,</span> <span class="s" style="color: #d14;">"ss-"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="250" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
250
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<pre style="margin: 0;">+<span id="LC250" class="line" lang="go"> <span class="n" style="color: #333;">strandedness</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"single"</span></span>
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<td class="diff-line-num new new_line" data-linenumber="251" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
251
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<pre style="margin: 0;">+<span id="LC251" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">moleculetype</span><span class="p">,</span> <span class="s" style="color: #d14;">"ms-"</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="252" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
252
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<pre style="margin: 0;">+<span id="LC252" class="line" lang="go"> <span class="n" style="color: #333;">moleculetype</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">moleculetype</span><span class="p">,</span> <span class="s" style="color: #d14;">"ms-"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="253" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
253
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<pre style="margin: 0;">+<span id="LC253" class="line" lang="go"> <span class="n" style="color: #333;">strandedness</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"mixed"</span></span>
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<td class="diff-line-num new new_line" data-linenumber="254" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
254
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<pre style="margin: 0;">+<span id="LC254" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasSuffix</span><span class="p">(</span><span class="n" style="color: #333;">moleculetype</span><span class="p">,</span> <span class="s" style="color: #d14;">"DNA"</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="255" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
255
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<pre style="margin: 0;">+<span id="LC255" class="line" lang="go"> <span class="n" style="color: #333;">strandedness</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"double"</span></span>
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<td class="diff-line-num new new_line" data-linenumber="256" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
256
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<pre style="margin: 0;">+<span id="LC256" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasSuffix</span><span class="p">(</span><span class="n" style="color: #333;">moleculetype</span><span class="p">,</span> <span class="s" style="color: #d14;">"RNA"</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="257" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
257
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<pre style="margin: 0;">+<span id="LC257" class="line" lang="go"> <span class="n" style="color: #333;">strandedness</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"single"</span></span>
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258
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<pre style="margin: 0;">+<span id="LC258" class="line" lang="go"> <span class="p">}</span></span>
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259
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<pre style="margin: 0;">+<span id="LC259" class="line" lang="go"></span>
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260
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<pre style="margin: 0;">+<span id="LC260" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_locus"</span><span class="p">,</span> <span class="n" style="color: #333;">cols</span><span class="p">[</span><span class="m" style="color: #099;">1</span><span class="p">])</span></span>
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261
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<pre style="margin: 0;">+<span id="LC261" class="line" lang="go"></span>
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262
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<pre style="margin: 0;">+<span id="LC262" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_length"</span><span class="p">,</span> <span class="n" style="color: #333;">cols</span><span class="p">[</span><span class="m" style="color: #099;">2</span><span class="p">])</span></span>
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263
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<pre style="margin: 0;">+<span id="LC263" class="line" lang="go"></span>
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264
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<pre style="margin: 0;">+<span id="LC264" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strandedness</span> <span class="o" style="font-weight: 600;">!=</span> <span class="s" style="color: #d14;">""</span> <span class="p">{</span></span>
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265
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<pre style="margin: 0;">+<span id="LC265" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_strandedness"</span><span class="p">,</span> <span class="n" style="color: #333;">strandedness</span><span class="p">)</span></span>
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266
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<pre style="margin: 0;">+<span id="LC266" class="line" lang="go"> <span class="p">}</span></span>
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267
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<pre style="margin: 0;">+<span id="LC267" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="268" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
268
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<pre style="margin: 0;">+<span id="LC268" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_moltype"</span><span class="p">,</span> <span class="n" style="color: #333;">moleculetype</span><span class="p">)</span></span>
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269
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<pre style="margin: 0;">+<span id="LC269" class="line" lang="go"></span>
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270
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<pre style="margin: 0;">+<span id="LC270" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_topology"</span><span class="p">,</span> <span class="n" style="color: #333;">cols</span><span class="p">[</span><span class="m" style="color: #099;">5</span><span class="p">])</span></span>
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271
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<pre style="margin: 0;">+<span id="LC271" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
272
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<pre style="margin: 0;">+<span id="LC272" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_division"</span><span class="p">,</span> <span class="n" style="color: #333;">cols</span><span class="p">[</span><span class="m" style="color: #099;">6</span><span class="p">])</span></span>
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<td class="diff-line-num new new_line" data-linenumber="273" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
273
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<pre style="margin: 0;">+<span id="LC273" class="line" lang="go"></span>
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274
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<pre style="margin: 0;">+<span id="LC274" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_update-date"</span><span class="p">,</span> <span class="n" style="color: #333;">cols</span><span class="p">[</span><span class="m" style="color: #099;">7</span><span class="p">])</span></span>
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275
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<pre style="margin: 0;">+<span id="LC275" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="276" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
276
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<pre style="margin: 0;">+<span id="LC276" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="277" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
277
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<pre style="margin: 0;">+<span id="LC277" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">"ERROR: "</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">line</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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278
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<pre style="margin: 0;">+<span id="LC278" class="line" lang="go"> <span class="p">}</span></span>
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279
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<pre style="margin: 0;">+<span id="LC279" class="line" lang="go"></span>
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280
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<pre style="margin: 0;">+<span id="LC280" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// read next line and continue</span></span>
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281
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<pre style="margin: 0;">+<span id="LC281" class="line" lang="go"> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">nextLine</span><span class="p">()</span></span>
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282
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<pre style="margin: 0;">+<span id="LC282" class="line" lang="go"> <span class="n" style="color: #333;">row</span><span class="o" style="font-weight: 600;">++</span></span>
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283
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<pre style="margin: 0;">+<span id="LC283" class="line" lang="go"> <span class="p">}</span></span>
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284
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<pre style="margin: 0;">+<span id="LC284" class="line" lang="go"></span>
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285
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<pre style="margin: 0;">+<span id="LC285" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"DEFINITION"</span><span class="p">)</span> <span class="p">{</span></span>
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286
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<pre style="margin: 0;">+<span id="LC286" class="line" lang="go"></span>
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287
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<pre style="margin: 0;">+<span id="LC287" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"DEFINITION"</span><span class="p">)</span></span>
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288
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<pre style="margin: 0;">+<span id="LC288" class="line" lang="go"> <span class="n" style="color: #333;">def</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">readContinuationLines</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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289
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<pre style="margin: 0;">+<span id="LC289" class="line" lang="go"> <span class="n" style="color: #333;">def</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSuffix</span><span class="p">(</span><span class="n" style="color: #333;">def</span><span class="p">,</span> <span class="s" style="color: #d14;">"."</span><span class="p">)</span></span>
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290
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<pre style="margin: 0;">+<span id="LC290" class="line" lang="go"></span>
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291
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<pre style="margin: 0;">+<span id="LC291" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_definition"</span><span class="p">,</span> <span class="n" style="color: #333;">def</span><span class="p">)</span></span>
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292
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<pre style="margin: 0;">+<span id="LC292" class="line" lang="go"> <span class="p">}</span></span>
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293
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<pre style="margin: 0;">+<span id="LC293" class="line" lang="go"></span>
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294
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<pre style="margin: 0;">+<span id="LC294" class="line" lang="go"> <span class="k" style="font-weight: 600;">var</span> <span class="n" style="color: #333;">secondaries</span> <span class="p">[]</span><span class="kt" style="color: #458; font-weight: 600;">string</span></span>
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295
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<pre style="margin: 0;">+<span id="LC295" class="line" lang="go"></span>
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296
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<pre style="margin: 0;">+<span id="LC296" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"ACCESSION"</span><span class="p">)</span> <span class="p">{</span></span>
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297
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<pre style="margin: 0;">+<span id="LC297" class="line" lang="go"></span>
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298
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<pre style="margin: 0;">+<span id="LC298" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"ACCESSION"</span><span class="p">)</span></span>
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299
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<pre style="margin: 0;">+<span id="LC299" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">readContinuationLines</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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300
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<pre style="margin: 0;">+<span id="LC300" class="line" lang="go"> <span class="n" style="color: #333;">accessions</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fields</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">)</span></span>
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301
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<pre style="margin: 0;">+<span id="LC301" class="line" lang="go"> <span class="n" style="color: #333;">ln</span> <span class="o" style="font-weight: 600;">:=</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">accessions</span><span class="p">)</span></span>
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302
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<pre style="margin: 0;">+<span id="LC302" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">ln</span> <span class="o" style="font-weight: 600;">></span> <span class="m" style="color: #099;">1</span> <span class="p">{</span></span>
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303
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<pre style="margin: 0;">+<span id="LC303" class="line" lang="go"></span>
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304
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<pre style="margin: 0;">+<span id="LC304" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_primary-accession"</span><span class="p">,</span> <span class="n" style="color: #333;">accessions</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">])</span></span>
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305
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<pre style="margin: 0;">+<span id="LC305" class="line" lang="go"></span>
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306
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<pre style="margin: 0;">+<span id="LC306" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// skip past primary accession, collect secondaries</span></span>
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307
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<pre style="margin: 0;">+<span id="LC307" class="line" lang="go"> <span class="n" style="color: #333;">secondaries</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">accessions</span><span class="p">[</span><span class="m" style="color: #099;">1</span><span class="o" style="font-weight: 600;">:</span><span class="p">]</span></span>
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308
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<pre style="margin: 0;">+<span id="LC308" class="line" lang="go"></span>
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309
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<pre style="margin: 0;">+<span id="LC309" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">ln</span> <span class="o" style="font-weight: 600;">==</span> <span class="m" style="color: #099;">1</span> <span class="p">{</span></span>
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310
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<pre style="margin: 0;">+<span id="LC310" class="line" lang="go"></span>
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311
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<pre style="margin: 0;">+<span id="LC311" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_primary-accession"</span><span class="p">,</span> <span class="n" style="color: #333;">accessions</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">])</span></span>
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312
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<pre style="margin: 0;">+<span id="LC312" class="line" lang="go"></span>
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313
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<pre style="margin: 0;">+<span id="LC313" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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314
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<pre style="margin: 0;">+<span id="LC314" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">"ERROR: "</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">line</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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315
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<pre style="margin: 0;">+<span id="LC315" class="line" lang="go"> <span class="p">}</span></span>
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316
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<pre style="margin: 0;">+<span id="LC316" class="line" lang="go"> <span class="p">}</span></span>
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317
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<pre style="margin: 0;">+<span id="LC318" class="line" lang="go"> <span class="n" style="color: #333;">accnver</span> <span class="o" style="font-weight: 600;">:=</span> <span class="s" style="color: #d14;">""</span></span>
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319
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<pre style="margin: 0;">+<span id="LC319" class="line" lang="go"> <span class="n" style="color: #333;">gi</span> <span class="o" style="font-weight: 600;">:=</span> <span class="s" style="color: #d14;">""</span></span>
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<pre style="margin: 0;">+<span id="LC321" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"VERSION"</span><span class="p">)</span> <span class="p">{</span></span>
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322
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<pre style="margin: 0;">+<span id="LC323" class="line" lang="go"> <span class="n" style="color: #333;">cols</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fields</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC324" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">cols</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="m" style="color: #099;">2</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC326" class="line" lang="go"> <span class="n" style="color: #333;">accnver</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">cols</span><span class="p">[</span><span class="m" style="color: #099;">1</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC327" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_accession-version"</span><span class="p">,</span> <span class="n" style="color: #333;">accnver</span><span class="p">)</span></span>
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328
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<pre style="margin: 0;">+<span id="LC328" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC329" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">cols</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="m" style="color: #099;">3</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC331" class="line" lang="go"> <span class="n" style="color: #333;">accnver</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">cols</span><span class="p">[</span><span class="m" style="color: #099;">1</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC332" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_accession-version"</span><span class="p">,</span> <span class="n" style="color: #333;">accnver</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC334" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// collect gi for other-seqids</span></span>
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335
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<pre style="margin: 0;">+<span id="LC335" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">cols</span><span class="p">[</span><span class="m" style="color: #099;">2</span><span class="p">],</span> <span class="s" style="color: #d14;">"GI:"</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC336" class="line" lang="go"> <span class="n" style="color: #333;">gi</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">cols</span><span class="p">[</span><span class="m" style="color: #099;">2</span><span class="p">],</span> <span class="s" style="color: #d14;">"GI:"</span><span class="p">)</span></span>
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337
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<pre style="margin: 0;">+<span id="LC337" class="line" lang="go"> <span class="p">}</span></span>
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339
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<pre style="margin: 0;">+<span id="LC339" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC340" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">"ERROR: "</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">line</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC341" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC343" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// read next line and continue</span></span>
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<pre style="margin: 0;">+<span id="LC344" class="line" lang="go"> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">nextLine</span><span class="p">()</span></span>
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345
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<pre style="margin: 0;">+<span id="LC345" class="line" lang="go"> <span class="n" style="color: #333;">row</span><span class="o" style="font-weight: 600;">++</span></span>
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346
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<pre style="margin: 0;">+<span id="LC347" class="line" lang="go"> <span class="p">}</span></span>
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348
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349
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<pre style="margin: 0;">+<span id="LC349" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">gi</span> <span class="o" style="font-weight: 600;">!=</span> <span class="s" style="color: #d14;">""</span> <span class="p">{</span></span>
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350
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<pre style="margin: 0;">+<span id="LC350" class="line" lang="go"></span>
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351
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<pre style="margin: 0;">+<span id="LC351" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDSeq_other-seqids></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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352
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<pre style="margin: 0;">+<span id="LC353" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeqid"</span><span class="p">,</span> <span class="s" style="color: #d14;">"gi|"</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">gi</span><span class="p">)</span></span>
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354
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<pre style="margin: 0;">+<span id="LC354" class="line" lang="go"></span>
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355
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<pre style="margin: 0;">+<span id="LC355" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" </INSDSeq_other-seqids></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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356
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<pre style="margin: 0;">+<span id="LC356" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC358" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">secondaries</span><span class="p">)</span> <span class="o" style="font-weight: 600;">></span> <span class="m" style="color: #099;">0</span> <span class="p">{</span></span>
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359
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<pre style="margin: 0;">+<span id="LC359" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC360" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDSeq_secondary-accessions></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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361
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<pre style="margin: 0;">+<span id="LC361" class="line" lang="go"></span>
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362
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<pre style="margin: 0;">+<span id="LC362" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">_</span><span class="p">,</span> <span class="n" style="color: #333;">secndry</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">secondaries</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC364" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSecondary-accn"</span><span class="p">,</span> <span class="n" style="color: #333;">secndry</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC365" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC367" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" </INSDSeq_secondary-accessions></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC368" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC370" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"DBLINK"</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC371" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC372" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"DBLINK"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC373" class="line" lang="go"> <span class="n" style="color: #333;">readContinuationLines</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC374" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// collect for database-reference</span></span>
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<pre style="margin: 0;">+<span id="LC375" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// out <- Token{DBLINK, dbl}</span></span>
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<pre style="margin: 0;">+<span id="LC376" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC377" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC378" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"KEYWORDS"</span><span class="p">)</span> <span class="p">{</span></span>
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379
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<pre style="margin: 0;">+<span id="LC379" class="line" lang="go"></span>
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380
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<pre style="margin: 0;">+<span id="LC380" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"KEYWORDS"</span><span class="p">)</span></span>
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381
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<pre style="margin: 0;">+<span id="LC381" class="line" lang="go"> <span class="n" style="color: #333;">key</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">readContinuationLines</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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382
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<pre style="margin: 0;">+<span id="LC382" class="line" lang="go"> <span class="n" style="color: #333;">key</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSuffix</span><span class="p">(</span><span class="n" style="color: #333;">key</span><span class="p">,</span> <span class="s" style="color: #d14;">"."</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC383" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC384" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">key</span> <span class="o" style="font-weight: 600;">!=</span> <span class="s" style="color: #d14;">""</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC385" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDSeq_keywords></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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386
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<pre style="margin: 0;">+<span id="LC386" class="line" lang="go"> <span class="n" style="color: #333;">kywds</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Split</span><span class="p">(</span><span class="n" style="color: #333;">key</span><span class="p">,</span> <span class="s" style="color: #d14;">";"</span><span class="p">)</span></span>
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387
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<pre style="margin: 0;">+<span id="LC387" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">_</span><span class="p">,</span> <span class="n" style="color: #333;">kw</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">kywds</span> <span class="p">{</span></span>
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388
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<pre style="margin: 0;">+<span id="LC388" class="line" lang="go"> <span class="n" style="color: #333;">kw</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">kw</span><span class="p">)</span></span>
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389
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<pre style="margin: 0;">+<span id="LC389" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">kw</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">""</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">kw</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"."</span> <span class="p">{</span></span>
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390
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<pre style="margin: 0;">+<span id="LC390" class="line" lang="go"> <span class="k" style="font-weight: 600;">continue</span></span>
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391
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<pre style="margin: 0;">+<span id="LC391" class="line" lang="go"> <span class="p">}</span></span>
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392
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<pre style="margin: 0;">+<span id="LC392" class="line" lang="go"></span>
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393
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<pre style="margin: 0;">+<span id="LC393" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDKeyword"</span><span class="p">,</span> <span class="n" style="color: #333;">kw</span><span class="p">)</span></span>
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394
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<pre style="margin: 0;">+<span id="LC394" class="line" lang="go"> <span class="p">}</span></span>
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395
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<pre style="margin: 0;">+<span id="LC395" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" </INSDSeq_keywords></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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396
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<pre style="margin: 0;">+<span id="LC396" class="line" lang="go"> <span class="p">}</span></span>
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397
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<pre style="margin: 0;">+<span id="LC397" class="line" lang="go"> <span class="p">}</span></span>
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398
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<pre style="margin: 0;">+<span id="LC398" class="line" lang="go"></span>
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399
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<pre style="margin: 0;">+<span id="LC399" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"SOURCE"</span><span class="p">)</span> <span class="p">{</span></span>
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400
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<pre style="margin: 0;">+<span id="LC400" class="line" lang="go"></span>
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401
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<pre style="margin: 0;">+<span id="LC401" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"SOURCE"</span><span class="p">)</span></span>
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402
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<pre style="margin: 0;">+<span id="LC402" class="line" lang="go"> <span class="n" style="color: #333;">src</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">readContinuationLines</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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403
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<pre style="margin: 0;">+<span id="LC403" class="line" lang="go"></span>
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404
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<pre style="margin: 0;">+<span id="LC404" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_source"</span><span class="p">,</span> <span class="n" style="color: #333;">src</span><span class="p">)</span></span>
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405
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<pre style="margin: 0;">+<span id="LC405" class="line" lang="go"> <span class="p">}</span></span>
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406
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<pre style="margin: 0;">+<span id="LC406" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC407" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">" ORGANISM"</span><span class="p">)</span> <span class="p">{</span></span>
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408
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<pre style="margin: 0;">+<span id="LC408" class="line" lang="go"></span>
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409
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<pre style="margin: 0;">+<span id="LC409" class="line" lang="go"> <span class="n" style="color: #333;">org</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">" ORGANISM"</span><span class="p">)</span></span>
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410
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<pre style="margin: 0;">+<span id="LC410" class="line" lang="go"> <span class="n" style="color: #333;">org</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">CompressRunsOfSpaces</span><span class="p">(</span><span class="n" style="color: #333;">org</span><span class="p">)</span></span>
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411
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<pre style="margin: 0;">+<span id="LC411" class="line" lang="go"> <span class="n" style="color: #333;">org</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">org</span><span class="p">)</span></span>
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412
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<pre style="margin: 0;">+<span id="LC412" class="line" lang="go"></span>
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413
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<pre style="margin: 0;">+<span id="LC413" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_organism"</span><span class="p">,</span> <span class="n" style="color: #333;">org</span><span class="p">)</span></span>
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414
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<pre style="margin: 0;">+<span id="LC414" class="line" lang="go"></span>
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415
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<pre style="margin: 0;">+<span id="LC415" class="line" lang="go"> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">nextLine</span><span class="p">()</span></span>
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416
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<pre style="margin: 0;">+<span id="LC416" class="line" lang="go"> <span class="n" style="color: #333;">row</span><span class="o" style="font-weight: 600;">++</span></span>
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417
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<pre style="margin: 0;">+<span id="LC417" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="n" style="color: #333;">twelvespaces</span><span class="p">)</span> <span class="p">{</span></span>
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418
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<pre style="margin: 0;">+<span id="LC418" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="n" style="color: #333;">twelvespaces</span><span class="p">)</span></span>
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419
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<pre style="margin: 0;">+<span id="LC419" class="line" lang="go"> <span class="n" style="color: #333;">tax</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">readContinuationLines</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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420
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<pre style="margin: 0;">+<span id="LC420" class="line" lang="go"> <span class="n" style="color: #333;">tax</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSuffix</span><span class="p">(</span><span class="n" style="color: #333;">tax</span><span class="p">,</span> <span class="s" style="color: #d14;">"."</span><span class="p">)</span></span>
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421
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<pre style="margin: 0;">+<span id="LC421" class="line" lang="go"></span>
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422
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<pre style="margin: 0;">+<span id="LC422" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_taxonomy"</span><span class="p">,</span> <span class="n" style="color: #333;">tax</span><span class="p">)</span></span>
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423
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<pre style="margin: 0;">+<span id="LC423" class="line" lang="go"> <span class="p">}</span></span>
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424
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<pre style="margin: 0;">+<span id="LC424" class="line" lang="go"> <span class="p">}</span></span>
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425
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<pre style="margin: 0;">+<span id="LC425" class="line" lang="go"></span>
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426
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<pre style="margin: 0;">+<span id="LC426" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDSeq_references></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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427
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<pre style="margin: 0;">+<span id="LC427" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="p">{</span></span>
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428
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<pre style="margin: 0;">+<span id="LC428" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"REFERENCE"</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC429" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// exit out of reference section</span></span>
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<pre style="margin: 0;">+<span id="LC430" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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<pre style="margin: 0;">+<span id="LC431" class="line" lang="go"> <span class="p">}</span></span>
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432
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<pre style="margin: 0;">+<span id="LC433" class="line" lang="go"> <span class="n" style="color: #333;">ref</span> <span class="o" style="font-weight: 600;">:=</span> <span class="s" style="color: #d14;">"0"</span></span>
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434
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<pre style="margin: 0;">+<span id="LC434" class="line" lang="go"></span>
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435
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<pre style="margin: 0;">+<span id="LC435" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDReference></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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436
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<pre style="margin: 0;">+<span id="LC436" class="line" lang="go"></span>
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437
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<pre style="margin: 0;">+<span id="LC437" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"REFERENCE"</span><span class="p">)</span></span>
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438
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<pre style="margin: 0;">+<span id="LC438" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">CompressRunsOfSpaces</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">)</span></span>
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439
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<pre style="margin: 0;">+<span id="LC439" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC440" class="line" lang="go"> <span class="n" style="color: #333;">idx</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Index</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">"("</span><span class="p">)</span></span>
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441
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<pre style="margin: 0;">+<span id="LC441" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">idx</span> <span class="o" style="font-weight: 600;">></span> <span class="m" style="color: #099;">0</span> <span class="p">{</span></span>
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442
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<pre style="margin: 0;">+<span id="LC442" class="line" lang="go"> <span class="n" style="color: #333;">ref</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">[</span><span class="o" style="font-weight: 600;">:</span><span class="n" style="color: #333;">idx</span><span class="p">])</span></span>
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<pre style="margin: 0;">+<span id="LC443" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC444" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDReference_reference"</span><span class="p">,</span> <span class="n" style="color: #333;">ref</span><span class="p">)</span></span>
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445
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<pre style="margin: 0;">+<span id="LC445" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC446" class="line" lang="go"> <span class="n" style="color: #333;">posn</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">str</span><span class="p">[</span><span class="n" style="color: #333;">idx</span><span class="o" style="font-weight: 600;">+</span><span class="m" style="color: #099;">1</span><span class="o" style="font-weight: 600;">:</span><span class="p">]</span></span>
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447
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<pre style="margin: 0;">+<span id="LC447" class="line" lang="go"> <span class="n" style="color: #333;">posn</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSuffix</span><span class="p">(</span><span class="n" style="color: #333;">posn</span><span class="p">,</span> <span class="s" style="color: #d14;">")"</span><span class="p">)</span></span>
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448
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<pre style="margin: 0;">+<span id="LC448" class="line" lang="go"> <span class="n" style="color: #333;">posn</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">posn</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC449" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">posn</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"sites"</span> <span class="p">{</span></span>
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451
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<pre style="margin: 0;">+<span id="LC451" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDReference_position"</span><span class="p">,</span> <span class="n" style="color: #333;">posn</span><span class="p">)</span></span>
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452
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<pre style="margin: 0;">+<span id="LC452" class="line" lang="go"></span>
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453
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<pre style="margin: 0;">+<span id="LC453" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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454
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<pre style="margin: 0;">+<span id="LC454" class="line" lang="go"> <span class="n" style="color: #333;">cols</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fields</span><span class="p">(</span><span class="n" style="color: #333;">posn</span><span class="p">)</span></span>
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455
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<pre style="margin: 0;">+<span id="LC455" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">cols</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="m" style="color: #099;">4</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">cols</span><span class="p">[</span><span class="m" style="color: #099;">2</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"to"</span> <span class="p">{</span></span>
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456
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<pre style="margin: 0;">+<span id="LC456" class="line" lang="go"></span>
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457
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<pre style="margin: 0;">+<span id="LC457" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDReference_position"</span><span class="p">,</span> <span class="n" style="color: #333;">cols</span><span class="p">[</span><span class="m" style="color: #099;">1</span><span class="p">]</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">".."</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">cols</span><span class="p">[</span><span class="m" style="color: #099;">3</span><span class="p">])</span></span>
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458
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<pre style="margin: 0;">+<span id="LC458" class="line" lang="go"></span>
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459
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<pre style="margin: 0;">+<span id="LC459" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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460
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<pre style="margin: 0;">+<span id="LC460" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">"ERROR: "</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">line</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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461
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<pre style="margin: 0;">+<span id="LC461" class="line" lang="go"> <span class="p">}</span></span>
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462
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<pre style="margin: 0;">+<span id="LC462" class="line" lang="go"> <span class="p">}</span></span>
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463
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<pre style="margin: 0;">+<span id="LC463" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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464
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<pre style="margin: 0;">+<span id="LC464" class="line" lang="go"> <span class="n" style="color: #333;">ref</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">)</span></span>
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465
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<pre style="margin: 0;">+<span id="LC465" class="line" lang="go"></span>
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466
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<pre style="margin: 0;">+<span id="LC466" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDReference_reference"</span><span class="p">,</span> <span class="n" style="color: #333;">ref</span><span class="p">)</span></span>
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467
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<pre style="margin: 0;">+<span id="LC467" class="line" lang="go"> <span class="p">}</span></span>
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468
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<pre style="margin: 0;">+<span id="LC468" class="line" lang="go"> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">nextLine</span><span class="p">()</span></span>
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469
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<pre style="margin: 0;">+<span id="LC469" class="line" lang="go"> <span class="n" style="color: #333;">row</span><span class="o" style="font-weight: 600;">++</span></span>
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470
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<pre style="margin: 0;">+<span id="LC470" class="line" lang="go"></span>
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471
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<pre style="margin: 0;">+<span id="LC471" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">" AUTHORS"</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC472" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC473" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">" AUTHORS"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC474" class="line" lang="go"> <span class="n" style="color: #333;">auths</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">readContinuationLines</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC476" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDReference_authors></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC477" class="line" lang="go"> <span class="n" style="color: #333;">authors</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Split</span><span class="p">(</span><span class="n" style="color: #333;">auths</span><span class="p">,</span> <span class="s" style="color: #d14;">", "</span><span class="p">)</span></span>
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478
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<pre style="margin: 0;">+<span id="LC478" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">_</span><span class="p">,</span> <span class="n" style="color: #333;">auth</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">authors</span> <span class="p">{</span></span>
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479
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<pre style="margin: 0;">+<span id="LC479" class="line" lang="go"> <span class="n" style="color: #333;">auth</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">auth</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC480" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">auth</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">""</span> <span class="p">{</span></span>
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481
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<pre style="margin: 0;">+<span id="LC481" class="line" lang="go"> <span class="k" style="font-weight: 600;">continue</span></span>
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<pre style="margin: 0;">+<span id="LC482" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC483" class="line" lang="go"> <span class="n" style="color: #333;">pair</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Split</span><span class="p">(</span><span class="n" style="color: #333;">auth</span><span class="p">,</span> <span class="s" style="color: #d14;">" and "</span><span class="p">)</span></span>
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484
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<pre style="margin: 0;">+<span id="LC484" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">_</span><span class="p">,</span> <span class="n" style="color: #333;">name</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">pair</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC485" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC486" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDAuthor"</span><span class="p">,</span> <span class="n" style="color: #333;">name</span><span class="p">)</span></span>
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487
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<pre style="margin: 0;">+<span id="LC487" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC488" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC489" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" </INSDReference_authors></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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490
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<pre style="margin: 0;">+<span id="LC490" class="line" lang="go"> <span class="p">}</span></span>
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491
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<pre style="margin: 0;">+<span id="LC492" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">" CONSRTM"</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC493" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC494" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">" CONSRTM"</span><span class="p">)</span></span>
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495
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<pre style="margin: 0;">+<span id="LC495" class="line" lang="go"> <span class="n" style="color: #333;">cons</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">readContinuationLines</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC497" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDReference_consortium"</span><span class="p">,</span> <span class="n" style="color: #333;">cons</span><span class="p">)</span></span>
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498
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<pre style="margin: 0;">+<span id="LC498" class="line" lang="go"> <span class="p">}</span></span>
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500
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<pre style="margin: 0;">+<span id="LC500" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">" TITLE"</span><span class="p">)</span> <span class="p">{</span></span>
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501
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502
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<pre style="margin: 0;">+<span id="LC502" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">" TITLE"</span><span class="p">)</span></span>
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503
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<pre style="margin: 0;">+<span id="LC503" class="line" lang="go"> <span class="n" style="color: #333;">titl</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">readContinuationLines</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC505" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDReference_title"</span><span class="p">,</span> <span class="n" style="color: #333;">titl</span><span class="p">)</span></span>
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506
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<pre style="margin: 0;">+<span id="LC506" class="line" lang="go"> <span class="p">}</span></span>
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508
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<pre style="margin: 0;">+<span id="LC508" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">" JOURNAL"</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC510" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">" JOURNAL"</span><span class="p">)</span></span>
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511
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<pre style="margin: 0;">+<span id="LC511" class="line" lang="go"> <span class="n" style="color: #333;">jour</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">readContinuationLines</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC513" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDReference_journal"</span><span class="p">,</span> <span class="n" style="color: #333;">jour</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC514" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC516" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">" PUBMED"</span><span class="p">)</span> <span class="p">{</span></span>
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517
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<pre style="margin: 0;">+<span id="LC517" class="line" lang="go"></span>
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518
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<pre style="margin: 0;">+<span id="LC518" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">" PUBMED"</span><span class="p">)</span></span>
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519
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<pre style="margin: 0;">+<span id="LC519" class="line" lang="go"> <span class="n" style="color: #333;">pmid</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">readContinuationLines</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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520
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521
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<pre style="margin: 0;">+<span id="LC521" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDReference_pubmed"</span><span class="p">,</span> <span class="n" style="color: #333;">pmid</span><span class="p">)</span></span>
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522
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<pre style="margin: 0;">+<span id="LC522" class="line" lang="go"> <span class="p">}</span></span>
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523
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<pre style="margin: 0;">+<span id="LC523" class="line" lang="go"></span>
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524
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<pre style="margin: 0;">+<span id="LC524" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">" REMARK"</span><span class="p">)</span> <span class="p">{</span></span>
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525
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<pre style="margin: 0;">+<span id="LC525" class="line" lang="go"></span>
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526
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<pre style="margin: 0;">+<span id="LC526" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">" REMARK"</span><span class="p">)</span></span>
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527
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<pre style="margin: 0;">+<span id="LC527" class="line" lang="go"> <span class="n" style="color: #333;">rem</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">readContinuationLines</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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528
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<pre style="margin: 0;">+<span id="LC528" class="line" lang="go"></span>
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529
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<pre style="margin: 0;">+<span id="LC529" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDReference_remark"</span><span class="p">,</span> <span class="n" style="color: #333;">rem</span><span class="p">)</span></span>
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530
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<pre style="margin: 0;">+<span id="LC530" class="line" lang="go"> <span class="p">}</span></span>
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531
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<pre style="margin: 0;">+<span id="LC531" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC532" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// end of this reference</span></span>
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<pre style="margin: 0;">+<span id="LC533" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" </INSDReference></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC534" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// continue to next reference</span></span>
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<pre style="margin: 0;">+<span id="LC535" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC536" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" </INSDSeq_references></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC538" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"COMMENT"</span><span class="p">)</span> <span class="p">{</span></span>
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539
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<pre style="margin: 0;">+<span id="LC539" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC540" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"COMMENT"</span><span class="p">)</span></span>
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541
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<pre style="margin: 0;">+<span id="LC541" class="line" lang="go"> <span class="n" style="color: #333;">com</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">readContinuationLines</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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542
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<pre style="margin: 0;">+<span id="LC542" class="line" lang="go"></span>
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543
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<pre style="margin: 0;">+<span id="LC543" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_comment"</span><span class="p">,</span> <span class="n" style="color: #333;">com</span><span class="p">)</span></span>
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544
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<pre style="margin: 0;">+<span id="LC544" class="line" lang="go"> <span class="p">}</span></span>
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545
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<pre style="margin: 0;">+<span id="LC545" class="line" lang="go"></span>
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546
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<pre style="margin: 0;">+<span id="LC546" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDSeq_feature-table></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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547
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<pre style="margin: 0;">+<span id="LC547" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"FEATURES"</span><span class="p">)</span> <span class="p">{</span></span>
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548
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<pre style="margin: 0;">+<span id="LC548" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC549" class="line" lang="go"> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">nextLine</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC550" class="line" lang="go"> <span class="n" style="color: #333;">row</span><span class="o" style="font-weight: 600;">++</span></span>
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<pre style="margin: 0;">+<span id="LC551" class="line" lang="go"></span>
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552
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<pre style="margin: 0;">+<span id="LC552" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="p">{</span></span>
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553
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<pre style="margin: 0;">+<span id="LC553" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">" "</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC554" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// exit out of features section</span></span>
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<pre style="margin: 0;">+<span id="LC555" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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<pre style="margin: 0;">+<span id="LC556" class="line" lang="go"> <span class="p">}</span></span>
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557
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<pre style="margin: 0;">+<span id="LC557" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><</span> <span class="m" style="color: #099;">22</span> <span class="p">{</span></span>
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558
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<pre style="margin: 0;">+<span id="LC558" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">"ERROR: "</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">line</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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559
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<pre style="margin: 0;">+<span id="LC559" class="line" lang="go"> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">nextLine</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC560" class="line" lang="go"> <span class="n" style="color: #333;">row</span><span class="o" style="font-weight: 600;">++</span></span>
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561
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<pre style="margin: 0;">+<span id="LC561" class="line" lang="go"> <span class="k" style="font-weight: 600;">continue</span></span>
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562
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<pre style="margin: 0;">+<span id="LC562" class="line" lang="go"> <span class="p">}</span></span>
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563
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<pre style="margin: 0;">+<span id="LC563" class="line" lang="go"></span>
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564
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<pre style="margin: 0;">+<span id="LC564" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDFeature></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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565
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<pre style="margin: 0;">+<span id="LC565" class="line" lang="go"></span>
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566
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<pre style="margin: 0;">+<span id="LC566" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// read feature key and start of location</span></span>
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567
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<pre style="margin: 0;">+<span id="LC567" class="line" lang="go"> <span class="n" style="color: #333;">fkey</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">line</span><span class="p">[</span><span class="m" style="color: #099;">5</span><span class="o" style="font-weight: 600;">:</span><span class="m" style="color: #099;">21</span><span class="p">]</span></span>
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568
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<pre style="margin: 0;">+<span id="LC568" class="line" lang="go"> <span class="n" style="color: #333;">fkey</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">fkey</span><span class="p">)</span></span>
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569
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<pre style="margin: 0;">+<span id="LC569" class="line" lang="go"></span>
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570
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<pre style="margin: 0;">+<span id="LC570" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDFeature_key"</span><span class="p">,</span> <span class="n" style="color: #333;">fkey</span><span class="p">)</span></span>
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571
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<pre style="margin: 0;">+<span id="LC571" class="line" lang="go"></span>
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572
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<pre style="margin: 0;">+<span id="LC572" class="line" lang="go"> <span class="n" style="color: #333;">loc</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">line</span><span class="p">[</span><span class="m" style="color: #099;">21</span><span class="o" style="font-weight: 600;">:</span><span class="p">]</span></span>
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573
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<pre style="margin: 0;">+<span id="LC573" class="line" lang="go"> <span class="n" style="color: #333;">loc</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">loc</span><span class="p">)</span></span>
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574
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<pre style="margin: 0;">+<span id="LC574" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="p">{</span></span>
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575
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<pre style="margin: 0;">+<span id="LC575" class="line" lang="go"> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">nextLine</span><span class="p">()</span></span>
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576
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<pre style="margin: 0;">+<span id="LC576" class="line" lang="go"> <span class="n" style="color: #333;">row</span><span class="o" style="font-weight: 600;">++</span></span>
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577
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<pre style="margin: 0;">+<span id="LC577" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="n" style="color: #333;">twentyonespaces</span><span class="p">)</span> <span class="p">{</span></span>
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578
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<pre style="margin: 0;">+<span id="LC578" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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579
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<pre style="margin: 0;">+<span id="LC579" class="line" lang="go"> <span class="p">}</span></span>
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580
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<pre style="margin: 0;">+<span id="LC580" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="n" style="color: #333;">twentyonespaces</span><span class="p">)</span></span>
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581
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<pre style="margin: 0;">+<span id="LC581" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">,</span> <span class="s" style="color: #d14;">"/"</span><span class="p">)</span> <span class="p">{</span></span>
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582
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<pre style="margin: 0;">+<span id="LC582" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// if not continuation of location, break out of loop</span></span>
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583
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<pre style="margin: 0;">+<span id="LC583" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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584
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<pre style="margin: 0;">+<span id="LC584" class="line" lang="go"> <span class="p">}</span></span>
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585
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<pre style="margin: 0;">+<span id="LC585" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// append subsequent line and continue with loop</span></span>
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586
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<pre style="margin: 0;">+<span id="LC586" class="line" lang="go"> <span class="n" style="color: #333;">loc</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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587
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<pre style="margin: 0;">+<span id="LC587" class="line" lang="go"> <span class="p">}</span></span>
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588
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<pre style="margin: 0;">+<span id="LC588" class="line" lang="go"></span>
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589
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<pre style="margin: 0;">+<span id="LC589" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDFeature_location"</span><span class="p">,</span> <span class="n" style="color: #333;">loc</span><span class="p">)</span></span>
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590
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<pre style="margin: 0;">+<span id="LC590" class="line" lang="go"></span>
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591
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<pre style="margin: 0;">+<span id="LC591" class="line" lang="go"> <span class="n" style="color: #333;">location_operator</span> <span class="o" style="font-weight: 600;">:=</span> <span class="s" style="color: #d14;">""</span></span>
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592
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<pre style="margin: 0;">+<span id="LC592" class="line" lang="go"> <span class="n" style="color: #333;">is_comp</span> <span class="o" style="font-weight: 600;">:=</span> <span class="no" style="color: #008080;">false</span></span>
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593
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<pre style="margin: 0;">+<span id="LC593" class="line" lang="go"> <span class="n" style="color: #333;">prime5</span> <span class="o" style="font-weight: 600;">:=</span> <span class="no" style="color: #008080;">false</span></span>
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594
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<pre style="margin: 0;">+<span id="LC594" class="line" lang="go"> <span class="n" style="color: #333;">prime3</span> <span class="o" style="font-weight: 600;">:=</span> <span class="no" style="color: #008080;">false</span></span>
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595
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<pre style="margin: 0;">+<span id="LC595" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC596" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// parseloc recursive definition</span></span>
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597
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<pre style="margin: 0;">+<span id="LC597" class="line" lang="go"> <span class="k" style="font-weight: 600;">var</span> <span class="n" style="color: #333;">parseloc</span> <span class="k" style="font-weight: 600;">func</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">)</span> <span class="p">[]</span><span class="kt" style="color: #458; font-weight: 600;">string</span></span>
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598
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<pre style="margin: 0;">+<span id="LC598" class="line" lang="go"></span>
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599
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<pre style="margin: 0;">+<span id="LC599" class="line" lang="go"> <span class="n" style="color: #333;">parseloc</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">func</span><span class="p">(</span><span class="n" style="color: #333;">str</span> <span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">)</span> <span class="p">[]</span><span class="kt" style="color: #458; font-weight: 600;">string</span> <span class="p">{</span></span>
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600
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<pre style="margin: 0;">+<span id="LC600" class="line" lang="go"></span>
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601
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<pre style="margin: 0;">+<span id="LC601" class="line" lang="go"> <span class="k" style="font-weight: 600;">var</span> <span class="n" style="color: #333;">acc</span> <span class="p">[]</span><span class="kt" style="color: #458; font-weight: 600;">string</span></span>
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602
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<pre style="margin: 0;">+<span id="LC602" class="line" lang="go"></span>
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603
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<pre style="margin: 0;">+<span id="LC603" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">"join("</span><span class="p">)</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasSuffix</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">")"</span><span class="p">)</span> <span class="p">{</span></span>
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604
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<pre style="margin: 0;">+<span id="LC604" class="line" lang="go"></span>
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605
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<pre style="margin: 0;">+<span id="LC605" class="line" lang="go"> <span class="n" style="color: #333;">location_operator</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"join"</span></span>
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606
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<pre style="margin: 0;">+<span id="LC606" class="line" lang="go"></span>
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607
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<pre style="margin: 0;">+<span id="LC607" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">"join("</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="608" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
608
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<pre style="margin: 0;">+<span id="LC608" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSuffix</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">")"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="609" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
609
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<pre style="margin: 0;">+<span id="LC609" class="line" lang="go"> <span class="n" style="color: #333;">items</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Split</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">","</span><span class="p">)</span></span>
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610
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<pre style="margin: 0;">+<span id="LC610" class="line" lang="go"></span>
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611
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<pre style="margin: 0;">+<span id="LC611" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">_</span><span class="p">,</span> <span class="n" style="color: #333;">thisloc</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">items</span> <span class="p">{</span></span>
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612
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<pre style="margin: 0;">+<span id="LC612" class="line" lang="go"> <span class="n" style="color: #333;">inner</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">parseloc</span><span class="p">(</span><span class="n" style="color: #333;">thisloc</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="613" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
613
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<pre style="margin: 0;">+<span id="LC613" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">_</span><span class="p">,</span> <span class="n" style="color: #333;">sub</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">inner</span> <span class="p">{</span></span>
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614
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<pre style="margin: 0;">+<span id="LC614" class="line" lang="go"> <span class="n" style="color: #333;">acc</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">append</span><span class="p">(</span><span class="n" style="color: #333;">acc</span><span class="p">,</span> <span class="n" style="color: #333;">sub</span><span class="p">)</span></span>
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615
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<pre style="margin: 0;">+<span id="LC615" class="line" lang="go"> <span class="p">}</span></span>
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616
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<pre style="margin: 0;">+<span id="LC616" class="line" lang="go"> <span class="p">}</span></span>
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617
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<pre style="margin: 0;">+<span id="LC617" class="line" lang="go"></span>
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618
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<pre style="margin: 0;">+<span id="LC618" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">"order("</span><span class="p">)</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasSuffix</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">")"</span><span class="p">)</span> <span class="p">{</span></span>
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619
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<pre style="margin: 0;">+<span id="LC619" class="line" lang="go"></span>
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620
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<pre style="margin: 0;">+<span id="LC620" class="line" lang="go"> <span class="n" style="color: #333;">location_operator</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"order"</span></span>
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621
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<pre style="margin: 0;">+<span id="LC621" class="line" lang="go"></span>
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622
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<pre style="margin: 0;">+<span id="LC622" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">"order("</span><span class="p">)</span></span>
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623
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<pre style="margin: 0;">+<span id="LC623" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSuffix</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">")"</span><span class="p">)</span></span>
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624
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<pre style="margin: 0;">+<span id="LC624" class="line" lang="go"> <span class="n" style="color: #333;">items</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Split</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">","</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC625" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC626" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">_</span><span class="p">,</span> <span class="n" style="color: #333;">thisloc</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">items</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC627" class="line" lang="go"> <span class="n" style="color: #333;">inner</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">parseloc</span><span class="p">(</span><span class="n" style="color: #333;">thisloc</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC628" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">_</span><span class="p">,</span> <span class="n" style="color: #333;">sub</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">inner</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC629" class="line" lang="go"> <span class="n" style="color: #333;">acc</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">append</span><span class="p">(</span><span class="n" style="color: #333;">acc</span><span class="p">,</span> <span class="n" style="color: #333;">sub</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC630" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC631" class="line" lang="go"> <span class="p">}</span></span>
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632
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<pre style="margin: 0;">+<span id="LC632" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC633" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">"complement("</span><span class="p">)</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasSuffix</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">")"</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC634" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC635" class="line" lang="go"> <span class="n" style="color: #333;">is_comp</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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<pre style="margin: 0;">+<span id="LC636" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC637" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">"complement("</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC638" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSuffix</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">")"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC639" class="line" lang="go"> <span class="n" style="color: #333;">items</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">parseloc</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC640" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC641" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// reverse items</span></span>
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<pre style="margin: 0;">+<span id="LC642" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">i</span><span class="p">,</span> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">:=</span> <span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">items</span><span class="p">)</span><span class="o" style="font-weight: 600;">-</span><span class="m" style="color: #099;">1</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">j</span><span class="p">;</span> <span class="n" style="color: #333;">i</span><span class="p">,</span> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">-</span><span class="m" style="color: #099;">1</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC643" class="line" lang="go"> <span class="n" style="color: #333;">items</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">],</span> <span class="n" style="color: #333;">items</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">items</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="p">],</span> <span class="n" style="color: #333;">items</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC644" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC645" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC646" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// reverse from and to positions, flip direction of angle brackets (partial flags)</span></span>
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<pre style="margin: 0;">+<span id="LC647" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">_</span><span class="p">,</span> <span class="n" style="color: #333;">thisloc</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">items</span> <span class="p">{</span></span>
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648
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<pre style="margin: 0;">+<span id="LC648" class="line" lang="go"> <span class="n" style="color: #333;">pts</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Split</span><span class="p">(</span><span class="n" style="color: #333;">thisloc</span><span class="p">,</span> <span class="s" style="color: #d14;">".."</span><span class="p">)</span></span>
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649
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<pre style="margin: 0;">+<span id="LC649" class="line" lang="go"> <span class="n" style="color: #333;">ln</span> <span class="o" style="font-weight: 600;">:=</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">pts</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC650" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">ln</span> <span class="o" style="font-weight: 600;">==</span> <span class="m" style="color: #099;">2</span> <span class="p">{</span></span>
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651
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<pre style="margin: 0;">+<span id="LC651" class="line" lang="go"> <span class="n" style="color: #333;">fst</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">pts</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">]</span></span>
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652
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<pre style="margin: 0;">+<span id="LC652" class="line" lang="go"> <span class="n" style="color: #333;">scd</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">pts</span><span class="p">[</span><span class="m" style="color: #099;">1</span><span class="p">]</span></span>
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653
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<pre style="margin: 0;">+<span id="LC653" class="line" lang="go"> <span class="n" style="color: #333;">lf</span> <span class="o" style="font-weight: 600;">:=</span> <span class="s" style="color: #d14;">""</span></span>
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654
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<pre style="margin: 0;">+<span id="LC654" class="line" lang="go"> <span class="n" style="color: #333;">rt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="s" style="color: #d14;">""</span></span>
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655
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<pre style="margin: 0;">+<span id="LC655" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">fst</span><span class="p">,</span> <span class="s" style="color: #d14;">"<"</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC656" class="line" lang="go"> <span class="n" style="color: #333;">fst</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">fst</span><span class="p">,</span> <span class="s" style="color: #d14;">"<"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC657" class="line" lang="go"> <span class="n" style="color: #333;">rt</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">">"</span></span>
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<pre style="margin: 0;">+<span id="LC658" class="line" lang="go"> <span class="p">}</span></span>
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659
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<pre style="margin: 0;">+<span id="LC659" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">scd</span><span class="p">,</span> <span class="s" style="color: #d14;">">"</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC660" class="line" lang="go"> <span class="n" style="color: #333;">scd</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">scd</span><span class="p">,</span> <span class="s" style="color: #d14;">">"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC661" class="line" lang="go"> <span class="n" style="color: #333;">lf</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"<"</span></span>
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662
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<pre style="margin: 0;">+<span id="LC662" class="line" lang="go"> <span class="p">}</span></span>
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663
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<pre style="margin: 0;">+<span id="LC663" class="line" lang="go"> <span class="n" style="color: #333;">acc</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">append</span><span class="p">(</span><span class="n" style="color: #333;">acc</span><span class="p">,</span> <span class="n" style="color: #333;">lf</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">scd</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">".."</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">rt</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">fst</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC664" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">ln</span> <span class="o" style="font-weight: 600;">></span> <span class="m" style="color: #099;">0</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC665" class="line" lang="go"> <span class="n" style="color: #333;">acc</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">append</span><span class="p">(</span><span class="n" style="color: #333;">acc</span><span class="p">,</span> <span class="n" style="color: #333;">pts</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">])</span></span>
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<pre style="margin: 0;">+<span id="LC666" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC667" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC669" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC671" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// save individual interval or point if no leading accession</span></span>
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<pre style="margin: 0;">+<span id="LC672" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Index</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">":"</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><</span> <span class="m" style="color: #099;">0</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC673" class="line" lang="go"> <span class="n" style="color: #333;">acc</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">append</span><span class="p">(</span><span class="n" style="color: #333;">acc</span><span class="p">,</span> <span class="n" style="color: #333;">str</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC674" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC675" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC677" class="line" lang="go"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">acc</span></span>
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<pre style="margin: 0;">+<span id="LC678" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC680" class="line" lang="go"> <span class="n" style="color: #333;">items</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">parseloc</span><span class="p">(</span><span class="n" style="color: #333;">loc</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC682" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDFeature_intervals></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC684" class="line" lang="go"> <span class="n" style="color: #333;">num_ivals</span> <span class="o" style="font-weight: 600;">:=</span> <span class="m" style="color: #099;">0</span></span>
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<pre style="margin: 0;">+<span id="LC686" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// report individual intervals</span></span>
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<pre style="margin: 0;">+<span id="LC687" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">_</span><span class="p">,</span> <span class="n" style="color: #333;">thisloc</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">items</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC688" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">thisloc</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">""</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC689" class="line" lang="go"> <span class="k" style="font-weight: 600;">continue</span></span>
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<pre style="margin: 0;">+<span id="LC690" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC692" class="line" lang="go"> <span class="n" style="color: #333;">num_ivals</span><span class="o" style="font-weight: 600;">++</span></span>
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693
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<pre style="margin: 0;">+<span id="LC693" class="line" lang="go"></span>
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694
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<pre style="margin: 0;">+<span id="LC694" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDInterval></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC695" class="line" lang="go"> <span class="n" style="color: #333;">pts</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Split</span><span class="p">(</span><span class="n" style="color: #333;">thisloc</span><span class="p">,</span> <span class="s" style="color: #d14;">".."</span><span class="p">)</span></span>
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696
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<pre style="margin: 0;">+<span id="LC696" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">pts</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="m" style="color: #099;">2</span> <span class="p">{</span></span>
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697
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<pre style="margin: 0;">+<span id="LC697" class="line" lang="go"></span>
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698
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<pre style="margin: 0;">+<span id="LC698" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// fr..to</span></span>
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699
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<pre style="margin: 0;">+<span id="LC699" class="line" lang="go"> <span class="n" style="color: #333;">fr</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">pts</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">]</span></span>
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700
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<pre style="margin: 0;">+<span id="LC700" class="line" lang="go"> <span class="n" style="color: #333;">to</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">pts</span><span class="p">[</span><span class="m" style="color: #099;">1</span><span class="p">]</span></span>
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701
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<pre style="margin: 0;">+<span id="LC701" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">fr</span><span class="p">,</span> <span class="s" style="color: #d14;">"<"</span><span class="p">)</span> <span class="p">{</span></span>
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702
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<pre style="margin: 0;">+<span id="LC702" class="line" lang="go"> <span class="n" style="color: #333;">fr</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">fr</span><span class="p">,</span> <span class="s" style="color: #d14;">"<"</span><span class="p">)</span></span>
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703
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<pre style="margin: 0;">+<span id="LC703" class="line" lang="go"> <span class="n" style="color: #333;">prime5</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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704
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<pre style="margin: 0;">+<span id="LC704" class="line" lang="go"> <span class="p">}</span></span>
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705
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<pre style="margin: 0;">+<span id="LC705" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">to</span><span class="p">,</span> <span class="s" style="color: #d14;">">"</span><span class="p">)</span> <span class="p">{</span></span>
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706
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<pre style="margin: 0;">+<span id="LC706" class="line" lang="go"> <span class="n" style="color: #333;">to</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">to</span><span class="p">,</span> <span class="s" style="color: #d14;">">"</span><span class="p">)</span></span>
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707
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<pre style="margin: 0;">+<span id="LC707" class="line" lang="go"> <span class="n" style="color: #333;">prime3</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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708
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<pre style="margin: 0;">+<span id="LC708" class="line" lang="go"> <span class="p">}</span></span>
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709
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<pre style="margin: 0;">+<span id="LC709" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDInterval_from"</span><span class="p">,</span> <span class="n" style="color: #333;">fr</span><span class="p">)</span></span>
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710
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<pre style="margin: 0;">+<span id="LC710" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDInterval_to"</span><span class="p">,</span> <span class="n" style="color: #333;">to</span><span class="p">)</span></span>
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711
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<pre style="margin: 0;">+<span id="LC711" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">is_comp</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC712" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDInterval_iscomp value=</span><span class="se" style="color: #d14;">\"</span><span class="s" style="color: #d14;">true</span><span class="se" style="color: #d14;">\"</span><span class="s" style="color: #d14;">/></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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713
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<pre style="margin: 0;">+<span id="LC713" class="line" lang="go"> <span class="p">}</span></span>
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714
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<pre style="margin: 0;">+<span id="LC714" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDInterval_accession"</span><span class="p">,</span> <span class="n" style="color: #333;">accnver</span><span class="p">)</span></span>
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715
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<pre style="margin: 0;">+<span id="LC715" class="line" lang="go"></span>
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716
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<pre style="margin: 0;">+<span id="LC716" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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717
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<pre style="margin: 0;">+<span id="LC717" class="line" lang="go"></span>
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718
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<pre style="margin: 0;">+<span id="LC718" class="line" lang="go"> <span class="n" style="color: #333;">crt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Split</span><span class="p">(</span><span class="n" style="color: #333;">thisloc</span><span class="p">,</span> <span class="s" style="color: #d14;">"^"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="719" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
719
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<pre style="margin: 0;">+<span id="LC719" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">crt</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="m" style="color: #099;">2</span> <span class="p">{</span></span>
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720
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<pre style="margin: 0;">+<span id="LC720" class="line" lang="go"></span>
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721
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<pre style="margin: 0;">+<span id="LC721" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// fr^to</span></span>
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722
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<pre style="margin: 0;">+<span id="LC722" class="line" lang="go"> <span class="n" style="color: #333;">fr</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">crt</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">]</span></span>
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723
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<pre style="margin: 0;">+<span id="LC723" class="line" lang="go"> <span class="n" style="color: #333;">to</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">crt</span><span class="p">[</span><span class="m" style="color: #099;">1</span><span class="p">]</span></span>
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724
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<pre style="margin: 0;">+<span id="LC724" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDInterval_from"</span><span class="p">,</span> <span class="n" style="color: #333;">fr</span><span class="p">)</span></span>
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725
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<pre style="margin: 0;">+<span id="LC725" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDInterval_to"</span><span class="p">,</span> <span class="n" style="color: #333;">to</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="726" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
726
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<pre style="margin: 0;">+<span id="LC726" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">is_comp</span> <span class="p">{</span></span>
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727
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<pre style="margin: 0;">+<span id="LC727" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDInterval_iscomp value=</span><span class="se" style="color: #d14;">\"</span><span class="s" style="color: #d14;">true</span><span class="se" style="color: #d14;">\"</span><span class="s" style="color: #d14;">/></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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728
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<pre style="margin: 0;">+<span id="LC728" class="line" lang="go"> <span class="p">}</span></span>
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729
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<pre style="margin: 0;">+<span id="LC729" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDInterval_interbp value=</span><span class="se" style="color: #d14;">\"</span><span class="s" style="color: #d14;">true</span><span class="se" style="color: #d14;">\"</span><span class="s" style="color: #d14;">/></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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730
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<pre style="margin: 0;">+<span id="LC730" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDInterval_accession"</span><span class="p">,</span> <span class="n" style="color: #333;">accnver</span><span class="p">)</span></span>
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731
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<pre style="margin: 0;">+<span id="LC731" class="line" lang="go"></span>
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732
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<pre style="margin: 0;">+<span id="LC732" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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733
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<pre style="margin: 0;">+<span id="LC733" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC734" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// pt</span></span>
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735
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<pre style="margin: 0;">+<span id="LC735" class="line" lang="go"> <span class="n" style="color: #333;">pt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">pts</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">]</span></span>
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736
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<pre style="margin: 0;">+<span id="LC736" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">pt</span><span class="p">,</span> <span class="s" style="color: #d14;">"<"</span><span class="p">)</span> <span class="p">{</span></span>
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737
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<pre style="margin: 0;">+<span id="LC737" class="line" lang="go"> <span class="n" style="color: #333;">pt</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">pt</span><span class="p">,</span> <span class="s" style="color: #d14;">"<"</span><span class="p">)</span></span>
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738
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<pre style="margin: 0;">+<span id="LC738" class="line" lang="go"> <span class="n" style="color: #333;">prime5</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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739
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<pre style="margin: 0;">+<span id="LC739" class="line" lang="go"> <span class="p">}</span></span>
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740
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<pre style="margin: 0;">+<span id="LC740" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">pt</span><span class="p">,</span> <span class="s" style="color: #d14;">">"</span><span class="p">)</span> <span class="p">{</span></span>
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741
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<pre style="margin: 0;">+<span id="LC741" class="line" lang="go"> <span class="n" style="color: #333;">pt</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">pt</span><span class="p">,</span> <span class="s" style="color: #d14;">">"</span><span class="p">)</span></span>
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742
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<pre style="margin: 0;">+<span id="LC742" class="line" lang="go"> <span class="n" style="color: #333;">prime3</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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743
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<pre style="margin: 0;">+<span id="LC743" class="line" lang="go"> <span class="p">}</span></span>
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744
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<pre style="margin: 0;">+<span id="LC744" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDInterval_point"</span><span class="p">,</span> <span class="n" style="color: #333;">pt</span><span class="p">)</span></span>
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745
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<pre style="margin: 0;">+<span id="LC745" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDInterval_accession"</span><span class="p">,</span> <span class="n" style="color: #333;">accnver</span><span class="p">)</span></span>
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746
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<pre style="margin: 0;">+<span id="LC746" class="line" lang="go"> <span class="p">}</span></span>
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747
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<pre style="margin: 0;">+<span id="LC747" class="line" lang="go"> <span class="p">}</span></span>
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748
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<pre style="margin: 0;">+<span id="LC748" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" </INSDInterval></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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749
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<pre style="margin: 0;">+<span id="LC749" class="line" lang="go"> <span class="p">}</span></span>
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750
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<pre style="margin: 0;">+<span id="LC750" class="line" lang="go"></span>
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751
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<pre style="margin: 0;">+<span id="LC751" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" </INSDFeature_intervals></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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752
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<pre style="margin: 0;">+<span id="LC752" class="line" lang="go"></span>
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753
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<pre style="margin: 0;">+<span id="LC753" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">num_ivals</span> <span class="o" style="font-weight: 600;">></span> <span class="m" style="color: #099;">1</span> <span class="p">{</span></span>
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754
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<pre style="margin: 0;">+<span id="LC754" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDFeature_operator"</span><span class="p">,</span> <span class="n" style="color: #333;">location_operator</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC755" class="line" lang="go"> <span class="p">}</span></span>
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756
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<pre style="margin: 0;">+<span id="LC756" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">prime5</span> <span class="p">{</span></span>
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757
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<pre style="margin: 0;">+<span id="LC757" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDFeature_partial5 value=</span><span class="se" style="color: #d14;">\"</span><span class="s" style="color: #d14;">true</span><span class="se" style="color: #d14;">\"</span><span class="s" style="color: #d14;">/></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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758
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<pre style="margin: 0;">+<span id="LC758" class="line" lang="go"> <span class="p">}</span></span>
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759
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<pre style="margin: 0;">+<span id="LC759" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">prime3</span> <span class="p">{</span></span>
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760
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<pre style="margin: 0;">+<span id="LC760" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDFeature_partial3 value=</span><span class="se" style="color: #d14;">\"</span><span class="s" style="color: #d14;">true</span><span class="se" style="color: #d14;">\"</span><span class="s" style="color: #d14;">/></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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761
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<pre style="margin: 0;">+<span id="LC761" class="line" lang="go"> <span class="p">}</span></span>
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762
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<pre style="margin: 0;">+<span id="LC762" class="line" lang="go"></span>
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763
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<pre style="margin: 0;">+<span id="LC763" class="line" lang="go"> <span class="n" style="color: #333;">hasQual</span> <span class="o" style="font-weight: 600;">:=</span> <span class="no" style="color: #008080;">false</span></span>
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764
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<pre style="margin: 0;">+<span id="LC764" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="p">{</span></span>
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765
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<pre style="margin: 0;">+<span id="LC765" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="n" style="color: #333;">twentyonespaces</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC766" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// if not qualifier line, break out of loop</span></span>
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767
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<pre style="margin: 0;">+<span id="LC767" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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768
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<pre style="margin: 0;">+<span id="LC768" class="line" lang="go"> <span class="p">}</span></span>
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769
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<pre style="margin: 0;">+<span id="LC769" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="n" style="color: #333;">twentyonespaces</span><span class="p">)</span></span>
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770
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<pre style="margin: 0;">+<span id="LC770" class="line" lang="go"> <span class="n" style="color: #333;">qual</span> <span class="o" style="font-weight: 600;">:=</span> <span class="s" style="color: #d14;">""</span></span>
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771
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<pre style="margin: 0;">+<span id="LC771" class="line" lang="go"> <span class="n" style="color: #333;">val</span> <span class="o" style="font-weight: 600;">:=</span> <span class="s" style="color: #d14;">""</span></span>
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772
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<pre style="margin: 0;">+<span id="LC772" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">,</span> <span class="s" style="color: #d14;">"/"</span><span class="p">)</span> <span class="p">{</span></span>
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773
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<pre style="margin: 0;">+<span id="LC773" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">hasQual</span> <span class="p">{</span></span>
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774
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<pre style="margin: 0;">+<span id="LC774" class="line" lang="go"> <span class="n" style="color: #333;">hasQual</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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775
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<pre style="margin: 0;">+<span id="LC775" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDFeature_quals></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC776" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC777" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// read new qualifier and start of value</span></span>
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778
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<pre style="margin: 0;">+<span id="LC778" class="line" lang="go"> <span class="n" style="color: #333;">qual</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">,</span> <span class="s" style="color: #d14;">"/"</span><span class="p">)</span></span>
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779
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<pre style="margin: 0;">+<span id="LC779" class="line" lang="go"> <span class="n" style="color: #333;">qual</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">qual</span><span class="p">)</span></span>
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780
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<pre style="margin: 0;">+<span id="LC780" class="line" lang="go"> <span class="n" style="color: #333;">idx</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Index</span><span class="p">(</span><span class="n" style="color: #333;">qual</span><span class="p">,</span> <span class="s" style="color: #d14;">"="</span><span class="p">)</span></span>
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781
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<pre style="margin: 0;">+<span id="LC781" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">idx</span> <span class="o" style="font-weight: 600;">></span> <span class="m" style="color: #099;">0</span> <span class="p">{</span></span>
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782
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<pre style="margin: 0;">+<span id="LC782" class="line" lang="go"> <span class="n" style="color: #333;">val</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">qual</span><span class="p">[</span><span class="n" style="color: #333;">idx</span><span class="o" style="font-weight: 600;">+</span><span class="m" style="color: #099;">1</span><span class="o" style="font-weight: 600;">:</span><span class="p">]</span></span>
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783
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<pre style="margin: 0;">+<span id="LC783" class="line" lang="go"> <span class="n" style="color: #333;">qual</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">qual</span><span class="p">[</span><span class="o" style="font-weight: 600;">:</span><span class="n" style="color: #333;">idx</span><span class="p">]</span></span>
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784
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<pre style="margin: 0;">+<span id="LC784" class="line" lang="go"> <span class="p">}</span></span>
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785
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<pre style="margin: 0;">+<span id="LC785" class="line" lang="go"></span>
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786
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<pre style="margin: 0;">+<span id="LC786" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="p">{</span></span>
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787
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<pre style="margin: 0;">+<span id="LC787" class="line" lang="go"> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">nextLine</span><span class="p">()</span></span>
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788
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<pre style="margin: 0;">+<span id="LC788" class="line" lang="go"> <span class="n" style="color: #333;">row</span><span class="o" style="font-weight: 600;">++</span></span>
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789
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<pre style="margin: 0;">+<span id="LC789" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="n" style="color: #333;">twentyonespaces</span><span class="p">)</span> <span class="p">{</span></span>
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790
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<pre style="margin: 0;">+<span id="LC790" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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791
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<pre style="margin: 0;">+<span id="LC791" class="line" lang="go"> <span class="p">}</span></span>
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792
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<pre style="margin: 0;">+<span id="LC792" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="n" style="color: #333;">twentyonespaces</span><span class="p">)</span></span>
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793
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<pre style="margin: 0;">+<span id="LC793" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">,</span> <span class="s" style="color: #d14;">"/"</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC794" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// if not continuation of qualifier, break out of loop</span></span>
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795
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<pre style="margin: 0;">+<span id="LC795" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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<pre style="margin: 0;">+<span id="LC796" class="line" lang="go"> <span class="p">}</span></span>
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797
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<pre style="margin: 0;">+<span id="LC797" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// append subsequent line to value and continue with loop</span></span>
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<pre style="margin: 0;">+<span id="LC798" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">qual</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"transcription"</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">qual</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"translation"</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">qual</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"peptide"</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">qual</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"anticodon"</span> <span class="p">{</span></span>
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799
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<pre style="margin: 0;">+<span id="LC799" class="line" lang="go"> <span class="n" style="color: #333;">val</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="800" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
800
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<pre style="margin: 0;">+<span id="LC800" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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801
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<pre style="margin: 0;">+<span id="LC801" class="line" lang="go"> <span class="n" style="color: #333;">val</span> <span class="o" style="font-weight: 600;">+=</span> <span class="s" style="color: #d14;">" "</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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802
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<pre style="margin: 0;">+<span id="LC802" class="line" lang="go"> <span class="p">}</span></span>
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803
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<pre style="margin: 0;">+<span id="LC803" class="line" lang="go"> <span class="p">}</span></span>
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804
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<pre style="margin: 0;">+<span id="LC804" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="805" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
805
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<pre style="margin: 0;">+<span id="LC805" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDQualifier></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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806
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<pre style="margin: 0;">+<span id="LC806" class="line" lang="go"></span>
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807
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<pre style="margin: 0;">+<span id="LC807" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDQualifier_name"</span><span class="p">,</span> <span class="n" style="color: #333;">qual</span><span class="p">)</span></span>
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808
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<pre style="margin: 0;">+<span id="LC808" class="line" lang="go"></span>
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809
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<pre style="margin: 0;">+<span id="LC809" class="line" lang="go"> <span class="n" style="color: #333;">val</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">val</span><span class="p">,</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\"</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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810
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<pre style="margin: 0;">+<span id="LC810" class="line" lang="go"> <span class="n" style="color: #333;">val</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSuffix</span><span class="p">(</span><span class="n" style="color: #333;">val</span><span class="p">,</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\"</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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811
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<pre style="margin: 0;">+<span id="LC811" class="line" lang="go"> <span class="n" style="color: #333;">val</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">val</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="812" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
812
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<pre style="margin: 0;">+<span id="LC812" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">val</span> <span class="o" style="font-weight: 600;">!=</span> <span class="s" style="color: #d14;">""</span> <span class="p">{</span></span>
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813
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<pre style="margin: 0;">+<span id="LC813" class="line" lang="go"></span>
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814
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<pre style="margin: 0;">+<span id="LC814" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDQualifier_value"</span><span class="p">,</span> <span class="n" style="color: #333;">val</span><span class="p">)</span></span>
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815
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<pre style="margin: 0;">+<span id="LC815" class="line" lang="go"> <span class="p">}</span></span>
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816
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<pre style="margin: 0;">+<span id="LC816" class="line" lang="go"></span>
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817
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<pre style="margin: 0;">+<span id="LC817" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" </INSDQualifier></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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818
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<pre style="margin: 0;">+<span id="LC818" class="line" lang="go"> <span class="p">}</span></span>
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819
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<pre style="margin: 0;">+<span id="LC819" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC820" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">hasQual</span> <span class="p">{</span></span>
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821
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<pre style="margin: 0;">+<span id="LC821" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" </INSDFeature_quals></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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822
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<pre style="margin: 0;">+<span id="LC822" class="line" lang="go"> <span class="p">}</span></span>
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823
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<pre style="margin: 0;">+<span id="LC823" class="line" lang="go"></span>
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824
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<pre style="margin: 0;">+<span id="LC824" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// end of this feature</span></span>
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825
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<pre style="margin: 0;">+<span id="LC825" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" </INSDFeature></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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826
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<pre style="margin: 0;">+<span id="LC826" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// continue to next feature</span></span>
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827
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<pre style="margin: 0;">+<span id="LC827" class="line" lang="go"> <span class="p">}</span></span>
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828
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<pre style="margin: 0;">+<span id="LC828" class="line" lang="go"> <span class="p">}</span></span>
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829
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<pre style="margin: 0;">+<span id="LC829" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" </INSDSeq_feature-table></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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830
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<pre style="margin: 0;">+<span id="LC830" class="line" lang="go"></span>
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831
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<pre style="margin: 0;">+<span id="LC831" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"CONTIG"</span><span class="p">)</span> <span class="p">{</span></span>
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832
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<pre style="margin: 0;">+<span id="LC832" class="line" lang="go"></span>
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833
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<pre style="margin: 0;">+<span id="LC833" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// pathological records can have over 90,000 components, use strings.Builder</span></span>
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834
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<pre style="margin: 0;">+<span id="LC834" class="line" lang="go"> <span class="n" style="color: #333;">con</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Reset</span><span class="p">()</span></span>
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835
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<pre style="margin: 0;">+<span id="LC835" class="line" lang="go"></span>
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836
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<pre style="margin: 0;">+<span id="LC836" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"CONTIG"</span><span class="p">)</span></span>
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837
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<pre style="margin: 0;">+<span id="LC837" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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838
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<pre style="margin: 0;">+<span id="LC838" class="line" lang="go"> <span class="n" style="color: #333;">con</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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839
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<pre style="margin: 0;">+<span id="LC839" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="p">{</span></span>
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840
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<pre style="margin: 0;">+<span id="LC840" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// read next line</span></span>
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841
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<pre style="margin: 0;">+<span id="LC841" class="line" lang="go"> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">nextLine</span><span class="p">()</span></span>
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842
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<pre style="margin: 0;">+<span id="LC842" class="line" lang="go"> <span class="n" style="color: #333;">row</span><span class="o" style="font-weight: 600;">++</span></span>
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843
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<pre style="margin: 0;">+<span id="LC843" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="n" style="color: #333;">twelvespaces</span><span class="p">)</span> <span class="p">{</span></span>
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844
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<pre style="margin: 0;">+<span id="LC844" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// if not continuation of contig, break out of loop</span></span>
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845
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<pre style="margin: 0;">+<span id="LC845" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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846
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<pre style="margin: 0;">+<span id="LC846" class="line" lang="go"> <span class="p">}</span></span>
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847
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<pre style="margin: 0;">+<span id="LC847" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// append subsequent line and continue with loop</span></span>
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848
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<pre style="margin: 0;">+<span id="LC848" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="n" style="color: #333;">twelvespaces</span><span class="p">)</span></span>
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849
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<pre style="margin: 0;">+<span id="LC849" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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850
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<pre style="margin: 0;">+<span id="LC850" class="line" lang="go"> <span class="n" style="color: #333;">con</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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851
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<pre style="margin: 0;">+<span id="LC851" class="line" lang="go"> <span class="p">}</span></span>
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852
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<pre style="margin: 0;">+<span id="LC852" class="line" lang="go"> <span class="p">}</span></span>
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853
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<pre style="margin: 0;">+<span id="LC853" class="line" lang="go"></span>
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854
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<pre style="margin: 0;">+<span id="LC854" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"BASE COUNT"</span><span class="p">)</span> <span class="p">{</span></span>
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855
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<pre style="margin: 0;">+<span id="LC855" class="line" lang="go"></span>
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856
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<pre style="margin: 0;">+<span id="LC856" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"BASE COUNT"</span><span class="p">)</span></span>
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857
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<pre style="margin: 0;">+<span id="LC857" class="line" lang="go"> <span class="n" style="color: #333;">readContinuationLines</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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858
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<pre style="margin: 0;">+<span id="LC858" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// not supported</span></span>
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859
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<pre style="margin: 0;">+<span id="LC859" class="line" lang="go"> <span class="p">}</span></span>
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860
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<pre style="margin: 0;">+<span id="LC860" class="line" lang="go"></span>
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861
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<pre style="margin: 0;">+<span id="LC861" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"ORIGIN"</span><span class="p">)</span> <span class="p">{</span></span>
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862
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<pre style="margin: 0;">+<span id="LC862" class="line" lang="go"></span>
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863
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<pre style="margin: 0;">+<span id="LC863" class="line" lang="go"> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">nextLine</span><span class="p">()</span></span>
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864
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<pre style="margin: 0;">+<span id="LC864" class="line" lang="go"> <span class="n" style="color: #333;">row</span><span class="o" style="font-weight: 600;">++</span></span>
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<pre style="margin: 0;">+<span id="LC865" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC867" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// remainder should be sequence</span></span>
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<pre style="margin: 0;">+<span id="LC869" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// sequence can be millions of bases, use strings.Builder</span></span>
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870
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<pre style="margin: 0;">+<span id="LC870" class="line" lang="go"> <span class="n" style="color: #333;">seq</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Reset</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC872" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">!=</span> <span class="s" style="color: #d14;">""</span> <span class="p">{</span></span>
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873
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<pre style="margin: 0;">+<span id="LC874" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"//"</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC876" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// end of record, print collected sequence</span></span>
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<pre style="margin: 0;">+<span id="LC877" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">seq</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">String</span><span class="p">()</span></span>
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878
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<pre style="margin: 0;">+<span id="LC878" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">!=</span> <span class="s" style="color: #d14;">""</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC879" class="line" lang="go"></span>
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880
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<pre style="margin: 0;">+<span id="LC880" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_sequence"</span><span class="p">,</span> <span class="n" style="color: #333;">str</span><span class="p">)</span></span>
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881
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<pre style="margin: 0;">+<span id="LC881" class="line" lang="go"> <span class="p">}</span></span>
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882
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<pre style="margin: 0;">+<span id="LC882" class="line" lang="go"> <span class="n" style="color: #333;">seq</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Reset</span><span class="p">()</span></span>
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883
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<pre style="margin: 0;">+<span id="LC883" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC884" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// print contig section</span></span>
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885
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<pre style="margin: 0;">+<span id="LC885" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">con</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">String</span><span class="p">()</span></span>
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886
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<pre style="margin: 0;">+<span id="LC886" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">)</span></span>
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887
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<pre style="margin: 0;">+<span id="LC887" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">!=</span> <span class="s" style="color: #d14;">""</span> <span class="p">{</span></span>
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888
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<pre style="margin: 0;">+<span id="LC888" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_contig"</span><span class="p">,</span> <span class="n" style="color: #333;">str</span><span class="p">)</span></span>
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889
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<pre style="margin: 0;">+<span id="LC889" class="line" lang="go"> <span class="p">}</span></span>
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890
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<pre style="margin: 0;">+<span id="LC890" class="line" lang="go"> <span class="n" style="color: #333;">con</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Reset</span><span class="p">()</span></span>
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891
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<pre style="margin: 0;">+<span id="LC891" class="line" lang="go"></span>
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892
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<pre style="margin: 0;">+<span id="LC892" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// end of record</span></span>
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893
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<pre style="margin: 0;">+<span id="LC893" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" </INSDSeq></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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894
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<pre style="margin: 0;">+<span id="LC894" class="line" lang="go"></span>
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895
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<pre style="margin: 0;">+<span id="LC895" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// send formatted record down channel</span></span>
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896
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<pre style="margin: 0;">+<span id="LC896" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">String</span><span class="p">()</span></span>
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897
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<pre style="margin: 0;">+<span id="LC897" class="line" lang="go"> <span class="n" style="color: #333;">out</span> <span class="o" style="font-weight: 600;"><-</span> <span class="n" style="color: #333;">txt</span></span>
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898
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<pre style="margin: 0;">+<span id="LC898" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Reset</span><span class="p">()</span></span>
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899
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<pre style="margin: 0;">+<span id="LC899" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// go to top of loop for next record</span></span>
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900
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<pre style="margin: 0;">+<span id="LC900" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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901
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<pre style="margin: 0;">+<span id="LC901" class="line" lang="go"> <span class="p">}</span></span>
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902
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<pre style="margin: 0;">+<span id="LC902" class="line" lang="go"></span>
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903
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<pre style="margin: 0;">+<span id="LC903" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// read next sequence line</span></span>
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904
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<pre style="margin: 0;">+<span id="LC904" class="line" lang="go"></span>
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905
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<pre style="margin: 0;">+<span id="LC905" class="line" lang="go"> <span class="n" style="color: #333;">cols</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fields</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">)</span></span>
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906
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<pre style="margin: 0;">+<span id="LC906" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">_</span><span class="p">,</span> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">cols</span> <span class="p">{</span></span>
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907
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<pre style="margin: 0;">+<span id="LC907" class="line" lang="go"></span>
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908
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<pre style="margin: 0;">+<span id="LC908" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">IsAllDigits</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">)</span> <span class="p">{</span></span>
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909
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<pre style="margin: 0;">+<span id="LC909" class="line" lang="go"> <span class="k" style="font-weight: 600;">continue</span></span>
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910
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<pre style="margin: 0;">+<span id="LC910" class="line" lang="go"> <span class="p">}</span></span>
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911
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<pre style="margin: 0;">+<span id="LC911" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="912" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
912
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<pre style="margin: 0;">+<span id="LC912" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// append letters to sequence</span></span>
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<td class="diff-line-num new new_line" data-linenumber="913" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
913
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<pre style="margin: 0;">+<span id="LC913" class="line" lang="go"> <span class="n" style="color: #333;">seq</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="914" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
914
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<pre style="margin: 0;">+<span id="LC914" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="915" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
915
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<pre style="margin: 0;">+<span id="LC915" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="916" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
916
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<pre style="margin: 0;">+<span id="LC916" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// read next line and continue</span></span>
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<td class="diff-line-num new new_line" data-linenumber="917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
917
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<pre style="margin: 0;">+<span id="LC917" class="line" lang="go"> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">nextLine</span><span class="p">()</span></span>
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<td class="diff-line-num new new_line" data-linenumber="918" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
918
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<pre style="margin: 0;">+<span id="LC918" class="line" lang="go"> <span class="n" style="color: #333;">row</span><span class="o" style="font-weight: 600;">++</span></span>
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<td class="diff-line-num new new_line" data-linenumber="919" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
919
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<pre style="margin: 0;">+<span id="LC919" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="920" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
920
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<pre style="margin: 0;">+<span id="LC920" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="921" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
921
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<pre style="margin: 0;">+<span id="LC921" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="922" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
922
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<pre style="margin: 0;">+<span id="LC922" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// continue to next record</span></span>
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<td class="diff-line-num new new_line" data-linenumber="923" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
923
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<pre style="margin: 0;">+<span id="LC923" class="line" lang="go"> <span class="p">}</span></span>
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924
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<pre style="margin: 0;">+<span id="LC924" class="line" lang="go"> <span class="p">}</span></span>
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925
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<pre style="margin: 0;">+<span id="LC925" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="926" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
926
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<pre style="margin: 0;">+<span id="LC926" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// launch single converter goroutine</span></span>
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<td class="diff-line-num new new_line" data-linenumber="927" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
927
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<pre style="margin: 0;">+<span id="LC927" class="line" lang="go"> <span class="k" style="font-weight: 600;">go</span> <span class="n" style="color: #333;">convertGenBank</span><span class="p">(</span><span class="n" style="color: #333;">inp</span><span class="p">,</span> <span class="n" style="color: #333;">out</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="928" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
928
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<pre style="margin: 0;">+<span id="LC928" class="line" lang="go"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="929" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
929
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<pre style="margin: 0;">+<span id="LC929" class="line" lang="go"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">out</span></span>
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<td class="diff-line-num new new_line" data-linenumber="930" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
930
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<pre style="margin: 0;">+<span id="LC930" class="line" lang="go"><span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="931" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
931
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<pre style="margin: 0;">+<span id="LC931" class="line" lang="go"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="932" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
932
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<pre style="margin: 0;">+<span id="LC932" class="line" lang="go"><span class="k" style="font-weight: 600;">func</span> <span class="n" style="color: #333;">main</span><span class="p">()</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="933" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
933
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<pre style="margin: 0;">+<span id="LC933" class="line" lang="go"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="934" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
934
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<pre style="margin: 0;">+<span id="LC934" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// skip past executable name</span></span>
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<td class="diff-line-num new new_line" data-linenumber="935" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
935
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<pre style="margin: 0;">+<span id="LC935" class="line" lang="go"> <span class="n" style="color: #333;">args</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Args</span><span class="p">[</span><span class="m" style="color: #099;">1</span><span class="o" style="font-weight: 600;">:</span><span class="p">]</span></span>
</pre>
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936
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<pre style="margin: 0;">+<span id="LC936" class="line" lang="go"></span>
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937
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<pre style="margin: 0;">+<span id="LC937" class="line" lang="go"> <span class="n" style="color: #333;">goOn</span> <span class="o" style="font-weight: 600;">:=</span> <span class="no" style="color: #008080;">true</span></span>
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938
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<pre style="margin: 0;">+<span id="LC938" class="line" lang="go"></span>
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939
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<pre style="margin: 0;">+<span id="LC939" class="line" lang="go"> <span class="n" style="color: #333;">timr</span> <span class="o" style="font-weight: 600;">:=</span> <span class="no" style="color: #008080;">false</span></span>
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940
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<pre style="margin: 0;">+<span id="LC940" class="line" lang="go"></span>
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941
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<pre style="margin: 0;">+<span id="LC941" class="line" lang="go"> <span class="n" style="color: #333;">infile</span> <span class="o" style="font-weight: 600;">:=</span> <span class="s" style="color: #d14;">""</span></span>
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942
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<pre style="margin: 0;">+<span id="LC942" class="line" lang="go"> <span class="n" style="color: #333;">outfile</span> <span class="o" style="font-weight: 600;">:=</span> <span class="s" style="color: #d14;">""</span></span>
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943
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<pre style="margin: 0;">+<span id="LC943" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="944" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
944
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<pre style="margin: 0;">+<span id="LC944" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">args</span><span class="p">)</span> <span class="o" style="font-weight: 600;">></span> <span class="m" style="color: #099;">0</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">goOn</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="945" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
945
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<pre style="margin: 0;">+<span id="LC945" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">args</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">]</span></span>
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946
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<pre style="margin: 0;">+<span id="LC946" class="line" lang="go"> <span class="k" style="font-weight: 600;">switch</span> <span class="n" style="color: #333;">str</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="947" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
947
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<pre style="margin: 0;">+<span id="LC947" class="line" lang="go"> <span class="k" style="font-weight: 600;">case</span> <span class="s" style="color: #d14;">"-help"</span><span class="o" style="font-weight: 600;">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="948" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
948
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<pre style="margin: 0;">+<span id="LC948" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Printf</span><span class="p">(</span><span class="s" style="color: #d14;">"g2x</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">%s</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span> <span class="n" style="color: #333;">g2xHelp</span><span class="p">)</span></span>
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949
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<pre style="margin: 0;">+<span id="LC949" class="line" lang="go"> <span class="k" style="font-weight: 600;">return</span></span>
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950
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<pre style="margin: 0;">+<span id="LC950" class="line" lang="go"> <span class="k" style="font-weight: 600;">case</span> <span class="s" style="color: #d14;">"-i"</span><span class="p">,</span> <span class="s" style="color: #d14;">"-input"</span><span class="o" style="font-weight: 600;">:</span></span>
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951
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<pre style="margin: 0;">+<span id="LC951" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// read data from file instead of stdin</span></span>
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952
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<pre style="margin: 0;">+<span id="LC952" class="line" lang="go"> <span class="n" style="color: #333;">args</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">args</span><span class="p">[</span><span class="m" style="color: #099;">1</span><span class="o" style="font-weight: 600;">:</span><span class="p">]</span></span>
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953
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<pre style="margin: 0;">+<span id="LC953" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">args</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><</span> <span class="m" style="color: #099;">1</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="954" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
954
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<pre style="margin: 0;">+<span id="LC954" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">"Input file name is missing</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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955
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<pre style="margin: 0;">+<span id="LC955" class="line" lang="go"> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Exit</span><span class="p">(</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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956
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<pre style="margin: 0;">+<span id="LC956" class="line" lang="go"> <span class="p">}</span></span>
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957
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<pre style="margin: 0;">+<span id="LC957" class="line" lang="go"> <span class="n" style="color: #333;">infile</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">args</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">]</span></span>
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958
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<pre style="margin: 0;">+<span id="LC958" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">infile</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"-"</span> <span class="p">{</span></span>
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959
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<pre style="margin: 0;">+<span id="LC959" class="line" lang="go"> <span class="n" style="color: #333;">infile</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">""</span></span>
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960
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<pre style="margin: 0;">+<span id="LC960" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="961" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
961
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<pre style="margin: 0;">+<span id="LC961" class="line" lang="go"> <span class="n" style="color: #333;">args</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">args</span><span class="p">[</span><span class="m" style="color: #099;">1</span><span class="o" style="font-weight: 600;">:</span><span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="962" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
962
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<pre style="margin: 0;">+<span id="LC962" class="line" lang="go"> <span class="k" style="font-weight: 600;">case</span> <span class="s" style="color: #d14;">"-o"</span><span class="p">,</span> <span class="s" style="color: #d14;">"-output"</span><span class="o" style="font-weight: 600;">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="963" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
963
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<pre style="margin: 0;">+<span id="LC963" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// write data to file instead of stdout</span></span>
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<td class="diff-line-num new new_line" data-linenumber="964" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
964
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<pre style="margin: 0;">+<span id="LC964" class="line" lang="go"> <span class="n" style="color: #333;">args</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">args</span><span class="p">[</span><span class="m" style="color: #099;">1</span><span class="o" style="font-weight: 600;">:</span><span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="965" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
965
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<pre style="margin: 0;">+<span id="LC965" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">args</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><</span> <span class="m" style="color: #099;">1</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="966" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
966
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<pre style="margin: 0;">+<span id="LC966" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">"Output file name is missing</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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967
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<pre style="margin: 0;">+<span id="LC967" class="line" lang="go"> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Exit</span><span class="p">(</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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968
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<pre style="margin: 0;">+<span id="LC968" class="line" lang="go"> <span class="p">}</span></span>
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969
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<pre style="margin: 0;">+<span id="LC969" class="line" lang="go"> <span class="n" style="color: #333;">outfile</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">args</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">]</span></span>
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970
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<pre style="margin: 0;">+<span id="LC970" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">outfile</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"-"</span> <span class="p">{</span></span>
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971
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<pre style="margin: 0;">+<span id="LC971" class="line" lang="go"> <span class="n" style="color: #333;">outfile</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">""</span></span>
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972
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<pre style="margin: 0;">+<span id="LC972" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="973" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
973
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<pre style="margin: 0;">+<span id="LC973" class="line" lang="go"> <span class="n" style="color: #333;">args</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">args</span><span class="p">[</span><span class="m" style="color: #099;">1</span><span class="o" style="font-weight: 600;">:</span><span class="p">]</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="974" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
974
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<pre style="margin: 0;">+<span id="LC974" class="line" lang="go"> <span class="k" style="font-weight: 600;">case</span> <span class="s" style="color: #d14;">"-timer"</span><span class="o" style="font-weight: 600;">:</span></span>
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975
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<pre style="margin: 0;">+<span id="LC975" class="line" lang="go"> <span class="n" style="color: #333;">timr</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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976
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<pre style="margin: 0;">+<span id="LC976" class="line" lang="go"> <span class="n" style="color: #333;">args</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">args</span><span class="p">[</span><span class="m" style="color: #099;">1</span><span class="o" style="font-weight: 600;">:</span><span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="977" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
977
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<pre style="margin: 0;">+<span id="LC977" class="line" lang="go"> <span class="k" style="font-weight: 600;">default</span><span class="o" style="font-weight: 600;">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="978" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
978
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<pre style="margin: 0;">+<span id="LC978" class="line" lang="go"> <span class="n" style="color: #333;">goOn</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">false</span></span>
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979
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<pre style="margin: 0;">+<span id="LC979" class="line" lang="go"> <span class="p">}</span></span>
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980
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<pre style="margin: 0;">+<span id="LC980" class="line" lang="go"> <span class="p">}</span></span>
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981
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<pre style="margin: 0;">+<span id="LC981" class="line" lang="go"></span>
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982
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<pre style="margin: 0;">+<span id="LC982" class="line" lang="go"> <span class="n" style="color: #333;">in</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stdin</span></span>
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983
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<pre style="margin: 0;">+<span id="LC983" class="line" lang="go"></span>
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984
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<pre style="margin: 0;">+<span id="LC984" class="line" lang="go"> <span class="n" style="color: #333;">isPipe</span> <span class="o" style="font-weight: 600;">:=</span> <span class="no" style="color: #008080;">false</span></span>
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985
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<pre style="margin: 0;">+<span id="LC985" class="line" lang="go"> <span class="n" style="color: #333;">fi</span><span class="p">,</span> <span class="n" style="color: #333;">err</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stdin</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stat</span><span class="p">()</span></span>
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986
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<pre style="margin: 0;">+<span id="LC986" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">err</span> <span class="o" style="font-weight: 600;">==</span> <span class="no" style="color: #008080;">nil</span> <span class="p">{</span></span>
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987
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<pre style="margin: 0;">+<span id="LC987" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// check for data being piped into stdin</span></span>
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988
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<pre style="margin: 0;">+<span id="LC988" class="line" lang="go"> <span class="n" style="color: #333;">isPipe</span> <span class="o" style="font-weight: 600;">=</span> <span class="kt" style="color: #458; font-weight: 600;">bool</span><span class="p">((</span><span class="n" style="color: #333;">fi</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Mode</span><span class="p">()</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">ModeNamedPipe</span><span class="p">)</span> <span class="o" style="font-weight: 600;">!=</span> <span class="m" style="color: #099;">0</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC989" class="line" lang="go"> <span class="p">}</span></span>
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990
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<pre style="margin: 0;">+<span id="LC990" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC991" class="line" lang="go"> <span class="n" style="color: #333;">usingFile</span> <span class="o" style="font-weight: 600;">:=</span> <span class="no" style="color: #008080;">false</span></span>
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992
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<pre style="margin: 0;">+<span id="LC992" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">infile</span> <span class="o" style="font-weight: 600;">!=</span> <span class="s" style="color: #d14;">""</span> <span class="p">{</span></span>
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993
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<pre style="margin: 0;">+<span id="LC993" class="line" lang="go"></span>
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994
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<pre style="margin: 0;">+<span id="LC994" class="line" lang="go"> <span class="n" style="color: #333;">fl</span><span class="p">,</span> <span class="n" style="color: #333;">err</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Open</span><span class="p">(</span><span class="n" style="color: #333;">infile</span><span class="p">)</span></span>
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995
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<pre style="margin: 0;">+<span id="LC995" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">err</span> <span class="o" style="font-weight: 600;">!=</span> <span class="no" style="color: #008080;">nil</span> <span class="p">{</span></span>
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996
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<pre style="margin: 0;">+<span id="LC996" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">"%s</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span> <span class="n" style="color: #333;">err</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Error</span><span class="p">())</span></span>
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<pre style="margin: 0;">+<span id="LC997" class="line" lang="go"> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Exit</span><span class="p">(</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC998" class="line" lang="go"> <span class="p">}</span></span>
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999
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<pre style="margin: 0;">+<span id="LC999" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC1000" class="line" lang="go"> <span class="k" style="font-weight: 600;">defer</span> <span class="n" style="color: #333;">fl</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Close</span><span class="p">()</span></span>
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1001
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1002
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<pre style="margin: 0;">+<span id="LC1002" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// use indicated file instead of stdin</span></span>
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1003
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<pre style="margin: 0;">+<span id="LC1003" class="line" lang="go"> <span class="n" style="color: #333;">in</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">fl</span></span>
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1004
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<pre style="margin: 0;">+<span id="LC1004" class="line" lang="go"> <span class="n" style="color: #333;">usingFile</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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1005
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<pre style="margin: 0;">+<span id="LC1005" class="line" lang="go"></span>
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1006
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<pre style="margin: 0;">+<span id="LC1006" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">isPipe</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">runtime</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">GOOS</span> <span class="o" style="font-weight: 600;">!=</span> <span class="s" style="color: #d14;">"windows"</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1007" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1007
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<pre style="margin: 0;">+<span id="LC1007" class="line" lang="go"> <span class="n" style="color: #333;">mode</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">fi</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Mode</span><span class="p">()</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">String</span><span class="p">()</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1008" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1008
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<pre style="margin: 0;">+<span id="LC1008" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">"Input data from both stdin and file '%s', mode is '%s'</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span> <span class="n" style="color: #333;">infile</span><span class="p">,</span> <span class="n" style="color: #333;">mode</span><span class="p">)</span></span>
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1009
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<pre style="margin: 0;">+<span id="LC1009" class="line" lang="go"> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Exit</span><span class="p">(</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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1010
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<pre style="margin: 0;">+<span id="LC1010" class="line" lang="go"> <span class="p">}</span></span>
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1011
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<pre style="margin: 0;">+<span id="LC1011" class="line" lang="go"> <span class="p">}</span></span>
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1012
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<pre style="margin: 0;">+<span id="LC1012" class="line" lang="go"></span>
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1013
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<pre style="margin: 0;">+<span id="LC1013" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">usingFile</span> <span class="o" style="font-weight: 600;">&&</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">isPipe</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1014" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1014
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<pre style="margin: 0;">+<span id="LC1014" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">"No input data supplied</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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1015
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<pre style="margin: 0;">+<span id="LC1015" class="line" lang="go"> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Exit</span><span class="p">(</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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1016
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<pre style="margin: 0;">+<span id="LC1016" class="line" lang="go"> <span class="p">}</span></span>
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1017
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<pre style="margin: 0;">+<span id="LC1017" class="line" lang="go"></span>
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1018
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<pre style="margin: 0;">+<span id="LC1018" class="line" lang="go"> <span class="n" style="color: #333;">op</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stdout</span></span>
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1019
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<pre style="margin: 0;">+<span id="LC1019" class="line" lang="go"></span>
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1020
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<pre style="margin: 0;">+<span id="LC1020" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">outfile</span> <span class="o" style="font-weight: 600;">!=</span> <span class="s" style="color: #d14;">""</span> <span class="p">{</span></span>
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1021
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<pre style="margin: 0;">+<span id="LC1021" class="line" lang="go"></span>
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1022
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<pre style="margin: 0;">+<span id="LC1022" class="line" lang="go"> <span class="n" style="color: #333;">fl</span><span class="p">,</span> <span class="n" style="color: #333;">err</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Create</span><span class="p">(</span><span class="n" style="color: #333;">outfile</span><span class="p">)</span></span>
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1023
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<pre style="margin: 0;">+<span id="LC1023" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">err</span> <span class="o" style="font-weight: 600;">!=</span> <span class="no" style="color: #008080;">nil</span> <span class="p">{</span></span>
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1024
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<pre style="margin: 0;">+<span id="LC1024" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">"%s</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span> <span class="n" style="color: #333;">err</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Error</span><span class="p">())</span></span>
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1025
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<pre style="margin: 0;">+<span id="LC1025" class="line" lang="go"> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Exit</span><span class="p">(</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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1026
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<pre style="margin: 0;">+<span id="LC1026" class="line" lang="go"> <span class="p">}</span></span>
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1027
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<pre style="margin: 0;">+<span id="LC1027" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="1028" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1028
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<pre style="margin: 0;">+<span id="LC1028" class="line" lang="go"> <span class="k" style="font-weight: 600;">defer</span> <span class="n" style="color: #333;">fl</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Close</span><span class="p">()</span></span>
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1029
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<pre style="margin: 0;">+<span id="LC1029" class="line" lang="go"></span>
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1030
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<pre style="margin: 0;">+<span id="LC1030" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// use indicated file instead of stdout</span></span>
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1031
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<pre style="margin: 0;">+<span id="LC1031" class="line" lang="go"> <span class="n" style="color: #333;">op</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">fl</span></span>
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1032
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<pre style="margin: 0;">+<span id="LC1032" class="line" lang="go"> <span class="p">}</span></span>
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1033
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<pre style="margin: 0;">+<span id="LC1033" class="line" lang="go"></span>
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1034
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<pre style="margin: 0;">+<span id="LC1034" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// initialize process timer</span></span>
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1035
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<pre style="margin: 0;">+<span id="LC1035" class="line" lang="go"> <span class="n" style="color: #333;">startTime</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">time</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Now</span><span class="p">()</span></span>
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1036
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<pre style="margin: 0;">+<span id="LC1036" class="line" lang="go"> <span class="n" style="color: #333;">recordCount</span> <span class="o" style="font-weight: 600;">:=</span> <span class="m" style="color: #099;">0</span></span>
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1037
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<pre style="margin: 0;">+<span id="LC1037" class="line" lang="go"> <span class="n" style="color: #333;">byteCount</span> <span class="o" style="font-weight: 600;">:=</span> <span class="m" style="color: #099;">0</span></span>
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1038
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<pre style="margin: 0;">+<span id="LC1038" class="line" lang="go"></span>
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1039
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<pre style="margin: 0;">+<span id="LC1039" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// print processing rate and program duration</span></span>
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1040
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<pre style="margin: 0;">+<span id="LC1040" class="line" lang="go"> <span class="n" style="color: #333;">printDuration</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">func</span><span class="p">(</span><span class="n" style="color: #333;">name</span> <span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">)</span> <span class="p">{</span></span>
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1041
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<pre style="margin: 0;">+<span id="LC1041" class="line" lang="go"></span>
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1042
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<pre style="margin: 0;">+<span id="LC1042" class="line" lang="go"> <span class="n" style="color: #333;">stopTime</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">time</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Now</span><span class="p">()</span></span>
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1043
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<pre style="margin: 0;">+<span id="LC1043" class="line" lang="go"> <span class="n" style="color: #333;">duration</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">stopTime</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Sub</span><span class="p">(</span><span class="n" style="color: #333;">startTime</span><span class="p">)</span></span>
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1044
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<pre style="margin: 0;">+<span id="LC1044" class="line" lang="go"> <span class="n" style="color: #333;">seconds</span> <span class="o" style="font-weight: 600;">:=</span> <span class="kt" style="color: #458; font-weight: 600;">float64</span><span class="p">(</span><span class="n" style="color: #333;">duration</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Nanoseconds</span><span class="p">())</span> <span class="o" style="font-weight: 600;">/</span> <span class="m" style="color: #099;">1e9</span></span>
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1045
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<pre style="margin: 0;">+<span id="LC1045" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="1046" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1046
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<pre style="margin: 0;">+<span id="LC1046" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">recordCount</span> <span class="o" style="font-weight: 600;">>=</span> <span class="m" style="color: #099;">1000000</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1047" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1047
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<pre style="margin: 0;">+<span id="LC1047" class="line" lang="go"> <span class="n" style="color: #333;">throughput</span> <span class="o" style="font-weight: 600;">:=</span> <span class="kt" style="color: #458; font-weight: 600;">float64</span><span class="p">(</span><span class="n" style="color: #333;">recordCount</span><span class="o" style="font-weight: 600;">/</span><span class="m" style="color: #099;">100000</span><span class="p">)</span> <span class="o" style="font-weight: 600;">/</span> <span class="m" style="color: #099;">10.0</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1048" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1048
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<pre style="margin: 0;">+<span id="LC1048" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">Xtract processed %.1f million %s in %.3f seconds"</span><span class="p">,</span> <span class="n" style="color: #333;">throughput</span><span class="p">,</span> <span class="n" style="color: #333;">name</span><span class="p">,</span> <span class="n" style="color: #333;">seconds</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1049" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1049
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<pre style="margin: 0;">+<span id="LC1049" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1050" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1050
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<pre style="margin: 0;">+<span id="LC1050" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">Xtract processed %d %s in %.3f seconds"</span><span class="p">,</span> <span class="n" style="color: #333;">recordCount</span><span class="p">,</span> <span class="n" style="color: #333;">name</span><span class="p">,</span> <span class="n" style="color: #333;">seconds</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1051" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1051
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<pre style="margin: 0;">+<span id="LC1051" class="line" lang="go"> <span class="p">}</span></span>
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1052
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<pre style="margin: 0;">+<span id="LC1052" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="1053" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1053
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<pre style="margin: 0;">+<span id="LC1053" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">seconds</span> <span class="o" style="font-weight: 600;">>=</span> <span class="m" style="color: #099;">0.001</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">recordCount</span> <span class="o" style="font-weight: 600;">></span> <span class="m" style="color: #099;">0</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1054" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1054
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<pre style="margin: 0;">+<span id="LC1054" class="line" lang="go"> <span class="n" style="color: #333;">rate</span> <span class="o" style="font-weight: 600;">:=</span> <span class="kt" style="color: #458; font-weight: 600;">int</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">float64</span><span class="p">(</span><span class="n" style="color: #333;">recordCount</span><span class="p">)</span> <span class="o" style="font-weight: 600;">/</span> <span class="n" style="color: #333;">seconds</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1055" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1055
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<pre style="margin: 0;">+<span id="LC1055" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">rate</span> <span class="o" style="font-weight: 600;">>=</span> <span class="m" style="color: #099;">1000000</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1056" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1056
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<pre style="margin: 0;">+<span id="LC1056" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">" (%d million %s/second"</span><span class="p">,</span> <span class="n" style="color: #333;">rate</span><span class="o" style="font-weight: 600;">/</span><span class="m" style="color: #099;">1000000</span><span class="p">,</span> <span class="n" style="color: #333;">name</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1057" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1057
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<pre style="margin: 0;">+<span id="LC1057" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1058" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1058
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<pre style="margin: 0;">+<span id="LC1058" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">" (%d %s/second"</span><span class="p">,</span> <span class="n" style="color: #333;">rate</span><span class="p">,</span> <span class="n" style="color: #333;">name</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1059" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1059
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<pre style="margin: 0;">+<span id="LC1059" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1060" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1060
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<pre style="margin: 0;">+<span id="LC1060" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">byteCount</span> <span class="o" style="font-weight: 600;">></span> <span class="m" style="color: #099;">0</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1061" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1061
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<pre style="margin: 0;">+<span id="LC1061" class="line" lang="go"> <span class="n" style="color: #333;">rate</span> <span class="o" style="font-weight: 600;">:=</span> <span class="kt" style="color: #458; font-weight: 600;">int</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">float64</span><span class="p">(</span><span class="n" style="color: #333;">byteCount</span><span class="p">)</span> <span class="o" style="font-weight: 600;">/</span> <span class="n" style="color: #333;">seconds</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1062" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1062
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<pre style="margin: 0;">+<span id="LC1062" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">rate</span> <span class="o" style="font-weight: 600;">>=</span> <span class="m" style="color: #099;">1000000</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1063" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1063
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<pre style="margin: 0;">+<span id="LC1063" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">", %d megabytes/second"</span><span class="p">,</span> <span class="n" style="color: #333;">rate</span><span class="o" style="font-weight: 600;">/</span><span class="m" style="color: #099;">1000000</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1064" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1064
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<pre style="margin: 0;">+<span id="LC1064" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">rate</span> <span class="o" style="font-weight: 600;">>=</span> <span class="m" style="color: #099;">1000</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1065" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1065
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<pre style="margin: 0;">+<span id="LC1065" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">", %d kilobytes/second"</span><span class="p">,</span> <span class="n" style="color: #333;">rate</span><span class="o" style="font-weight: 600;">/</span><span class="m" style="color: #099;">1000</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1066" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1066
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<pre style="margin: 0;">+<span id="LC1066" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1067" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1067
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<pre style="margin: 0;">+<span id="LC1067" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">", %d bytes/second"</span><span class="p">,</span> <span class="n" style="color: #333;">rate</span><span class="p">)</span></span>
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1068
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<pre style="margin: 0;">+<span id="LC1068" class="line" lang="go"> <span class="p">}</span></span>
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1069
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<pre style="margin: 0;">+<span id="LC1069" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1070" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1070
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<pre style="margin: 0;">+<span id="LC1070" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">")"</span><span class="p">)</span></span>
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1071
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<pre style="margin: 0;">+<span id="LC1071" class="line" lang="go"> <span class="p">}</span></span>
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1072
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<pre style="margin: 0;">+<span id="LC1072" class="line" lang="go"></span>
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1073
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<pre style="margin: 0;">+<span id="LC1073" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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1074
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<pre style="margin: 0;">+<span id="LC1074" class="line" lang="go"> <span class="p">}</span></span>
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1075
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<pre style="margin: 0;">+<span id="LC1075" class="line" lang="go"></span>
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1076
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<pre style="margin: 0;">+<span id="LC1076" class="line" lang="go"> <span class="n" style="color: #333;">gbk</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">GenBankConverter</span><span class="p">(</span><span class="n" style="color: #333;">in</span><span class="p">)</span></span>
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1077
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<pre style="margin: 0;">+<span id="LC1077" class="line" lang="go"></span>
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1078
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<pre style="margin: 0;">+<span id="LC1078" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">gbk</span> <span class="o" style="font-weight: 600;">==</span> <span class="no" style="color: #008080;">nil</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1079" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1079
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<pre style="margin: 0;">+<span id="LC1079" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">"Unable to create GenBank to XML converter</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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1080
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<pre style="margin: 0;">+<span id="LC1080" class="line" lang="go"> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Exit</span><span class="p">(</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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1081
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<pre style="margin: 0;">+<span id="LC1081" class="line" lang="go"> <span class="p">}</span></span>
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1082
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<pre style="margin: 0;">+<span id="LC1082" class="line" lang="go"></span>
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1083
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<pre style="margin: 0;">+<span id="LC1083" class="line" lang="go"> <span class="n" style="color: #333;">head</span> <span class="o" style="font-weight: 600;">:=</span> <span class="s" style="color: #d14;">`<?xml version="1.0" encoding="UTF-8"?></span></span>
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1084
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<pre style="margin: 0;">+<span id="LC1084" class="line" lang="go"><span class="s" style="color: #d14;"><!DOCTYPE INSDSet PUBLIC "-//NCBI//INSD INSDSeq/EN" "http://www.ncbi.nlm.nih.gov/dtd/INSD_INSDSeq.dtd"></span></span>
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1085
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<pre style="margin: 0;">+<span id="LC1085" class="line" lang="go"><span class="s" style="color: #d14;"><INSDSet></span></span>
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1086
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<pre style="margin: 0;">+<span id="LC1086" class="line" lang="go"><span class="s" style="color: #d14;">`</span></span>
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1087
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<pre style="margin: 0;">+<span id="LC1087" class="line" lang="go"> <span class="n" style="color: #333;">tail</span> <span class="o" style="font-weight: 600;">:=</span> <span class="s" style="color: #d14;">""</span></span>
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1088
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<pre style="margin: 0;">+<span id="LC1088" class="line" lang="go"></span>
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1089
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<pre style="margin: 0;">+<span id="LC1089" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// drain output of last channel in service chain</span></span>
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1090
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<pre style="margin: 0;">+<span id="LC1090" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// runtime assigns concurrent goroutines to execute on separate CPUs for maximum speed</span></span>
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1091
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<pre style="margin: 0;">+<span id="LC1091" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">gbk</span> <span class="p">{</span></span>
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1092
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<pre style="margin: 0;">+<span id="LC1092" class="line" lang="go"></span>
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1093
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<pre style="margin: 0;">+<span id="LC1093" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">""</span> <span class="p">{</span></span>
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1094
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<pre style="margin: 0;">+<span id="LC1094" class="line" lang="go"> <span class="k" style="font-weight: 600;">continue</span></span>
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1095
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<pre style="margin: 0;">+<span id="LC1095" class="line" lang="go"> <span class="p">}</span></span>
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1096
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<pre style="margin: 0;">+<span id="LC1096" class="line" lang="go"></span>
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1097
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<pre style="margin: 0;">+<span id="LC1097" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">head</span> <span class="o" style="font-weight: 600;">!=</span> <span class="s" style="color: #d14;">""</span> <span class="p">{</span></span>
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1098
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<pre style="margin: 0;">+<span id="LC1098" class="line" lang="go"> <span class="n" style="color: #333;">op</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="n" style="color: #333;">head</span><span class="p">)</span></span>
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1099
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<pre style="margin: 0;">+<span id="LC1099" class="line" lang="go"> <span class="n" style="color: #333;">head</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">""</span></span>
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1100
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<pre style="margin: 0;">+<span id="LC1100" class="line" lang="go"> <span class="n" style="color: #333;">tail</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">`</INSDSet></span></span>
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1101
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<pre style="margin: 0;">+<span id="LC1101" class="line" lang="go"><span class="s" style="color: #d14;">`</span></span>
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1102
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<pre style="margin: 0;">+<span id="LC1102" class="line" lang="go"> <span class="p">}</span></span>
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1103
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<pre style="margin: 0;">+<span id="LC1103" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="1104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1104
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<pre style="margin: 0;">+<span id="LC1104" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// send result to stdout</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1105
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<pre style="margin: 0;">+<span id="LC1105" class="line" lang="go"> <span class="n" style="color: #333;">op</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">)</span></span>
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1106
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<pre style="margin: 0;">+<span id="LC1106" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasSuffix</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span> <span class="p">{</span></span>
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1107
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<pre style="margin: 0;">+<span id="LC1107" class="line" lang="go"> <span class="n" style="color: #333;">op</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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1108
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<pre style="margin: 0;">+<span id="LC1108" class="line" lang="go"> <span class="p">}</span></span>
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1109
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<pre style="margin: 0;">+<span id="LC1109" class="line" lang="go"></span>
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1110
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<pre style="margin: 0;">+<span id="LC1110" class="line" lang="go"> <span class="n" style="color: #333;">recordCount</span><span class="o" style="font-weight: 600;">++</span></span>
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1111
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<pre style="margin: 0;">+<span id="LC1111" class="line" lang="go"></span>
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1112
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<pre style="margin: 0;">+<span id="LC1112" class="line" lang="go"> <span class="n" style="color: #333;">runtime</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Gosched</span><span class="p">()</span></span>
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1113
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<pre style="margin: 0;">+<span id="LC1113" class="line" lang="go"> <span class="p">}</span></span>
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1114
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<pre style="margin: 0;">+<span id="LC1114" class="line" lang="go"></span>
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1115
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<pre style="margin: 0;">+<span id="LC1115" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">tail</span> <span class="o" style="font-weight: 600;">!=</span> <span class="s" style="color: #d14;">""</span> <span class="p">{</span></span>
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1116
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<pre style="margin: 0;">+<span id="LC1116" class="line" lang="go"> <span class="n" style="color: #333;">op</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="n" style="color: #333;">tail</span><span class="p">)</span></span>
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1117
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<pre style="margin: 0;">+<span id="LC1117" class="line" lang="go"> <span class="p">}</span></span>
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1118
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<pre style="margin: 0;">+<span id="LC1118" class="line" lang="go"></span>
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1119
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<pre style="margin: 0;">+<span id="LC1119" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// explicitly freeing memory before exit is useful for finding leaks when profiling</span></span>
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1120
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<pre style="margin: 0;">+<span id="LC1120" class="line" lang="go"> <span class="n" style="color: #333;">debug</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">FreeOSMemory</span><span class="p">()</span></span>
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1121
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<pre style="margin: 0;">+<span id="LC1121" class="line" lang="go"></span>
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1122
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<pre style="margin: 0;">+<span id="LC1122" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">timr</span> <span class="p">{</span></span>
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1123
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<pre style="margin: 0;">+<span id="LC1123" class="line" lang="go"> <span class="n" style="color: #333;">printDuration</span><span class="p">(</span><span class="s" style="color: #d14;">"records"</span><span class="p">)</span></span>
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1124
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<pre style="margin: 0;">+<span id="LC1124" class="line" lang="go"> <span class="p">}</span></span>
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1125
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<pre style="margin: 0;">+<span id="LC1125" class="line" lang="go"><span class="p">}</span></span></pre>
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<li id="a3bf962e151b57ecc4bab8772c24123436f0bf1b">
<a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/compare/36914b997fe7b6f71dbe208a0f2e29e2ca47f056...3ff79da3f1d0d11d2976f414edfd56adcf372b89#a3bf962e151b57ecc4bab8772c24123436f0bf1b"><strong>gbf2xml</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">#!/usr/bin/env perl</span></span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="perl"></span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># ===========================================================================</span></span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">#</span></span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># PUBLIC DOMAIN NOTICE</span></span>
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6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># National Center for Biotechnology Information (NCBI)</span></span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">#</span></span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># This software/database is a "United States Government Work" under the</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># terms of the United States Copyright Act. It was written as part of</span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># the author's official duties as a United States Government employee and</span></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># thus cannot be copyrighted. This software/database is freely available</span></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># to the public for use. The National Library of Medicine and the U.S.</span></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># Government do not place any restriction on its use or reproduction.</span></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># We would, however, appreciate having the NCBI and the author cited in</span></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># any work or product based on this material.</span></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># Although all reasonable efforts have been taken to ensure the accuracy</span></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># and reliability of the software and data, the NLM and the U.S.</span></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># Government do not and cannot warrant the performance or results that</span></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># may be obtained by using this software or data. The NLM and the U.S.</span></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># Government disclaim all warranties, express or implied, including</span></span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># warranties of performance, merchantability or fitness for any particular</span></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># purpose.</span></span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># ===========================================================================</span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># File Name: gbf2xml</span></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># Author: Jonathan Kans</span></span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># Version Creation Date: 6/8/17</span></span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># ==========================================================================</span></span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="perl"></span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nv" style="color: #008080;">strict</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nv" style="color: #008080;">warnings</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="perl"></span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="perl"></span>
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39
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># Script to convert GenBank flatfiles to INSDSeq XML.</span></span>
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40
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">#</span></span>
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41
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># Feature intervals that refer to 'far' locations, i.e., those not within</span></span>
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42
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># the cited record and which have an accession and colon, are suppressed.</span></span>
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43
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># Those rare features (e.g., trans-splicing between molecules) are lost.</span></span>
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44
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">#</span></span>
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45
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># Keywords and References are currently not supported.</span></span>
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46
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="perl"></span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="perl"></span>
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48
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># definitions</span></span>
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49
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="perl"></span>
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50
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nv" style="color: #008080;">constant</span> <span class="nv" style="color: #008080;">false</span> <span class="o" style="font-weight: 600;">=></span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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51
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nv" style="color: #008080;">constant</span> <span class="nv" style="color: #008080;">true</span> <span class="o" style="font-weight: 600;">=></span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="perl"></span>
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53
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># state variables for tracking current position in flatfile</span></span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="perl"></span>
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55
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$in_seq</span><span class="p">;</span></span>
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56
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$in_con</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
57
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$in_feat</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$in_key</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$in_qual</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$in_def</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$in_tax</span><span class="p">;</span></span>
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62
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$any_feat</span><span class="p">;</span></span>
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63
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$any_qual</span><span class="p">;</span></span>
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64
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$no_space</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$is_comp</span><span class="p">;</span></span>
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66
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<pre style="margin: 0;">-<span id="LC66" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$current_key</span><span class="p">;</span></span>
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67
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$current_loc</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC68" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$current_qual</span><span class="p">;</span></span>
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69
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$current_val</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC70" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$moltype</span><span class="p">;</span></span>
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71
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$division</span><span class="p">;</span></span>
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72
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$update_date</span><span class="p">;</span></span>
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73
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<pre style="margin: 0;">-<span id="LC73" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$organism</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="74" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
74
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<pre style="margin: 0;">-<span id="LC74" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$source</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="75" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
75
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<pre style="margin: 0;">-<span id="LC75" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$taxonomy</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="76" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
76
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<pre style="margin: 0;">-<span id="LC76" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$topology</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="77" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
77
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<pre style="margin: 0;">-<span id="LC77" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$sequence</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="78" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
78
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$length</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="79" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
79
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$curr_seq</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="80" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
80
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<pre style="margin: 0;">-<span id="LC80" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$locus</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
81
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<pre style="margin: 0;">-<span id="LC81" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$defline</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC82" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$accn</span><span class="p">;</span></span>
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83
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$accndv</span><span class="p">;</span></span>
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84
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$location_operator</span><span class="p">;</span></span>
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85
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<pre style="margin: 0;">-<span id="LC85" class="line" lang="perl"></span>
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86
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># subroutine to clear state variables for each flatfile</span></span>
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87
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<pre style="margin: 0;">-<span id="LC87" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># start in in_feat state to gracefully handle missing FEATURES/FH line</span></span>
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88
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<pre style="margin: 0;">-<span id="LC88" class="line" lang="perl"></span>
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89
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="perl"><span class="k" style="font-weight: 600;">sub </span><span class="nf" style="color: #900; font-weight: 600;">clearflags</span> <span class="p">{</span></span>
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90
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="perl"> <span class="nv" style="color: #008080;">$in_seq</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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91
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<pre style="margin: 0;">-<span id="LC91" class="line" lang="perl"> <span class="nv" style="color: #008080;">$in_con</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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92
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<pre style="margin: 0;">-<span id="LC92" class="line" lang="perl"> <span class="nv" style="color: #008080;">$in_feat</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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93
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<pre style="margin: 0;">-<span id="LC93" class="line" lang="perl"> <span class="nv" style="color: #008080;">$in_key</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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94
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<pre style="margin: 0;">-<span id="LC94" class="line" lang="perl"> <span class="nv" style="color: #008080;">$in_qual</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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95
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<pre style="margin: 0;">-<span id="LC95" class="line" lang="perl"> <span class="nv" style="color: #008080;">$in_def</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
96
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<pre style="margin: 0;">-<span id="LC96" class="line" lang="perl"> <span class="nv" style="color: #008080;">$in_tax</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="97" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
97
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<pre style="margin: 0;">-<span id="LC97" class="line" lang="perl"> <span class="nv" style="color: #008080;">$any_feat</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="98" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
98
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<pre style="margin: 0;">-<span id="LC98" class="line" lang="perl"> <span class="nv" style="color: #008080;">$any_qual</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
99
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<pre style="margin: 0;">-<span id="LC99" class="line" lang="perl"> <span class="nv" style="color: #008080;">$no_space</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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100
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<pre style="margin: 0;">-<span id="LC100" class="line" lang="perl"> <span class="nv" style="color: #008080;">$is_comp</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
101
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<pre style="margin: 0;">-<span id="LC101" class="line" lang="perl"> <span class="nv" style="color: #008080;">$current_key</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">"";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
102
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<pre style="margin: 0;">-<span id="LC102" class="line" lang="perl"> <span class="nv" style="color: #008080;">$current_loc</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">"";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
103
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<pre style="margin: 0;">-<span id="LC103" class="line" lang="perl"> <span class="nv" style="color: #008080;">$current_qual</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">"";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
104
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<pre style="margin: 0;">-<span id="LC104" class="line" lang="perl"> <span class="nv" style="color: #008080;">$current_val</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">"";</span></span>
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<pre style="margin: 0;">-<span id="LC105" class="line" lang="perl"> <span class="nv" style="color: #008080;">$moltype</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">"";</span></span>
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106
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<pre style="margin: 0;">-<span id="LC106" class="line" lang="perl"> <span class="nv" style="color: #008080;">$division</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">"";</span></span>
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107
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<pre style="margin: 0;">-<span id="LC107" class="line" lang="perl"> <span class="nv" style="color: #008080;">$update_date</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">"";</span></span>
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108
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<pre style="margin: 0;">-<span id="LC108" class="line" lang="perl"> <span class="nv" style="color: #008080;">$organism</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">"";</span></span>
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109
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<pre style="margin: 0;">-<span id="LC109" class="line" lang="perl"> <span class="nv" style="color: #008080;">$source</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">"";</span></span>
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110
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<pre style="margin: 0;">-<span id="LC110" class="line" lang="perl"> <span class="nv" style="color: #008080;">$taxonomy</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">"";</span></span>
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111
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<pre style="margin: 0;">-<span id="LC111" class="line" lang="perl"> <span class="nv" style="color: #008080;">$topology</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">"";</span></span>
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112
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<pre style="margin: 0;">-<span id="LC112" class="line" lang="perl"> <span class="nv" style="color: #008080;">$sequence</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">"";</span></span>
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113
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<pre style="margin: 0;">-<span id="LC113" class="line" lang="perl"> <span class="nv" style="color: #008080;">$length</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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114
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<pre style="margin: 0;">-<span id="LC114" class="line" lang="perl"> <span class="nv" style="color: #008080;">$curr_seq</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">"";</span></span>
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115
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<pre style="margin: 0;">-<span id="LC115" class="line" lang="perl"> <span class="nv" style="color: #008080;">$locus</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">"";</span></span>
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116
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<pre style="margin: 0;">-<span id="LC116" class="line" lang="perl"> <span class="nv" style="color: #008080;">$defline</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">"";</span></span>
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117
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<pre style="margin: 0;">-<span id="LC117" class="line" lang="perl"> <span class="nv" style="color: #008080;">$accn</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">"";</span></span>
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118
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<pre style="margin: 0;">-<span id="LC118" class="line" lang="perl"> <span class="nv" style="color: #008080;">$accndv</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">"";</span></span>
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119
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<pre style="margin: 0;">-<span id="LC119" class="line" lang="perl"> <span class="nv" style="color: #008080;">$location_operator</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">"";</span></span>
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120
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<pre style="margin: 0;">-<span id="LC120" class="line" lang="perl"><span class="p">}</span></span>
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121
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<pre style="margin: 0;">-<span id="LC121" class="line" lang="perl"></span>
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122
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<pre style="margin: 0;">-<span id="LC122" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># recursive subroutine for parsing flatfile representation of feature location</span></span>
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123
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<pre style="margin: 0;">-<span id="LC123" class="line" lang="perl"></span>
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124
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<pre style="margin: 0;">-<span id="LC124" class="line" lang="perl"><span class="k" style="font-weight: 600;">sub </span><span class="nf" style="color: #900; font-weight: 600;">parseloc</span> <span class="p">{</span></span>
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125
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<pre style="margin: 0;">-<span id="LC125" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$subloc</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">shift</span> <span class="p">(</span><span class="nv" style="color: #008080;">@_</span><span class="p">);</span></span>
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126
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<pre style="margin: 0;">-<span id="LC126" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">@working</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">();</span></span>
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127
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<pre style="margin: 0;">-<span id="LC127" class="line" lang="perl"></span>
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128
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<pre style="margin: 0;">-<span id="LC128" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$subloc</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">/^(join|order)\((.+)\)$/</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
129
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<pre style="margin: 0;">-<span id="LC129" class="line" lang="perl"> <span class="nv" style="color: #008080;">$location_operator</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$1</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="130" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
130
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<pre style="margin: 0;">-<span id="LC130" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$temploc</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$2</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
131
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<pre style="margin: 0;">-<span id="LC131" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">@items</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">split</span> <span class="p">('</span><span class="s1" style="color: #d14;">,</span><span class="p">',</span> <span class="nv" style="color: #008080;">$temploc</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="132" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
132
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<pre style="margin: 0;">-<span id="LC132" class="line" lang="perl"> <span class="k" style="font-weight: 600;">foreach</span> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$thisloc</span> <span class="p">(</span><span class="nv" style="color: #008080;">@items</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
133
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<pre style="margin: 0;">-<span id="LC133" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$thisloc</span> <span class="o" style="font-weight: 600;">!~</span> <span class="sr" style="color: #009926;">/^.*:.*$/</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
134
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<pre style="margin: 0;">-<span id="LC134" class="line" lang="perl"> <span class="nb" style="color: #0086b3;">push</span> <span class="p">(</span><span class="nv" style="color: #008080;">@working</span><span class="p">,</span> <span class="nv" style="color: #008080;">parseloc</span> <span class="p">(</span><span class="nv" style="color: #008080;">$thisloc</span><span class="p">));</span></span>
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135
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<pre style="margin: 0;">-<span id="LC135" class="line" lang="perl"> <span class="p">}</span></span>
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136
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<pre style="margin: 0;">-<span id="LC136" class="line" lang="perl"> <span class="p">}</span></span>
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<td class="diff-line-num old old_line" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
137
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<pre style="margin: 0;">-<span id="LC137" class="line" lang="perl"></span>
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<td class="diff-line-num old old_line" data-linenumber="138" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
138
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<pre style="margin: 0;">-<span id="LC138" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">elsif</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$subloc</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">/^complement\((.+)\)$/</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
139
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<pre style="margin: 0;">-<span id="LC139" class="line" lang="perl"> <span class="nv" style="color: #008080;">$is_comp</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">true</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="140" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
140
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<pre style="margin: 0;">-<span id="LC140" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$comploc</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$1</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
141
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<pre style="margin: 0;">-<span id="LC141" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">@items</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">parseloc</span> <span class="p">(</span><span class="nv" style="color: #008080;">$comploc</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="142" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
142
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<pre style="margin: 0;">-<span id="LC142" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">@rev</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">reverse</span> <span class="p">(</span><span class="nv" style="color: #008080;">@items</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
143
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<pre style="margin: 0;">-<span id="LC143" class="line" lang="perl"> <span class="k" style="font-weight: 600;">foreach</span> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$thisloc</span> <span class="p">(</span><span class="nv" style="color: #008080;">@rev</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
144
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<pre style="margin: 0;">-<span id="LC144" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$thisloc</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">/^([^.]+)\.\.([^.]+)$/</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
145
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<pre style="margin: 0;">-<span id="LC145" class="line" lang="perl"> <span class="nv" style="color: #008080;">$thisloc</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">"</span><span class="s2" style="color: #d14;">$2..$1</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
146
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<pre style="margin: 0;">-<span id="LC146" class="line" lang="perl"> <span class="p">}</span></span>
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<td class="diff-line-num old old_line" data-linenumber="147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
147
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<pre style="margin: 0;">-<span id="LC147" class="line" lang="perl"></span>
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<td class="diff-line-num old old_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
148
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<pre style="margin: 0;">-<span id="LC148" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$thisloc</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">/^>([^.]+)\.\.([^.]+)$/</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
149
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<pre style="margin: 0;">-<span id="LC149" class="line" lang="perl"> <span class="nv" style="color: #008080;">$thisloc</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">"</span><span class="s2" style="color: #d14;"><$1..$2</span><span class="p">";</span></span>
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<pre style="margin: 0;">-<span id="LC150" class="line" lang="perl"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC151" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$thisloc</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">/^([^.]+)\.\.<([^.]+)$/</span> <span class="p">)</span> <span class="p">{</span></span>
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152
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<pre style="margin: 0;">-<span id="LC152" class="line" lang="perl"> <span class="nv" style="color: #008080;">$thisloc</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">"</span><span class="s2" style="color: #d14;">$1..>$2</span><span class="p">";</span></span>
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<pre style="margin: 0;">-<span id="LC153" class="line" lang="perl"> <span class="p">}</span></span>
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154
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<pre style="margin: 0;">-<span id="LC154" class="line" lang="perl"></span>
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155
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<pre style="margin: 0;">-<span id="LC155" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$thisloc</span> <span class="o" style="font-weight: 600;">!~</span> <span class="sr" style="color: #009926;">/^.*:.*$/</span> <span class="p">)</span> <span class="p">{</span></span>
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156
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<pre style="margin: 0;">-<span id="LC156" class="line" lang="perl"> <span class="nb" style="color: #0086b3;">push</span> <span class="p">(</span><span class="nv" style="color: #008080;">@working</span><span class="p">,</span> <span class="nv" style="color: #008080;">parseloc</span> <span class="p">(</span><span class="nv" style="color: #008080;">$thisloc</span><span class="p">));</span></span>
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157
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<pre style="margin: 0;">-<span id="LC157" class="line" lang="perl"> <span class="p">}</span></span>
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158
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<pre style="margin: 0;">-<span id="LC158" class="line" lang="perl"> <span class="p">}</span></span>
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159
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<pre style="margin: 0;">-<span id="LC159" class="line" lang="perl"></span>
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160
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<pre style="margin: 0;">-<span id="LC160" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">elsif</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$subloc</span> <span class="o" style="font-weight: 600;">!~</span> <span class="sr" style="color: #009926;">/^.*:.*$/</span> <span class="p">)</span> <span class="p">{</span></span>
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161
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<pre style="margin: 0;">-<span id="LC161" class="line" lang="perl"> <span class="nb" style="color: #0086b3;">push</span> <span class="p">(</span><span class="nv" style="color: #008080;">@working</span><span class="p">,</span> <span class="nv" style="color: #008080;">$subloc</span><span class="p">);</span></span>
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162
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<pre style="margin: 0;">-<span id="LC162" class="line" lang="perl"> <span class="p">}</span></span>
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163
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<pre style="margin: 0;">-<span id="LC163" class="line" lang="perl"></span>
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164
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<pre style="margin: 0;">-<span id="LC164" class="line" lang="perl"> <span class="k" style="font-weight: 600;">return</span> <span class="nv" style="color: #008080;">@working</span><span class="p">;</span></span>
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165
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<pre style="margin: 0;">-<span id="LC165" class="line" lang="perl"><span class="p">}</span></span>
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166
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<pre style="margin: 0;">-<span id="LC166" class="line" lang="perl"></span>
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167
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<pre style="margin: 0;">-<span id="LC167" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">#subroutine to print next feature key / location / qualifier line</span></span>
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168
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<pre style="margin: 0;">-<span id="LC168" class="line" lang="perl"></span>
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169
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<pre style="margin: 0;">-<span id="LC169" class="line" lang="perl"><span class="k" style="font-weight: 600;">sub </span><span class="nf" style="color: #900; font-weight: 600;">flushline</span> <span class="p">{</span></span>
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170
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<pre style="margin: 0;">-<span id="LC170" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$in_key</span> <span class="p">)</span> <span class="p">{</span></span>
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171
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<pre style="margin: 0;">-<span id="LC171" class="line" lang="perl"></span>
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172
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<pre style="margin: 0;">-<span id="LC172" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$any_qual</span> <span class="p">)</span> <span class="p">{</span></span>
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173
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<pre style="margin: 0;">-<span id="LC173" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> </INSDFeature_quals></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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174
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<pre style="margin: 0;">-<span id="LC174" class="line" lang="perl"> <span class="nv" style="color: #008080;">$any_qual</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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175
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<pre style="margin: 0;">-<span id="LC175" class="line" lang="perl"> <span class="p">}</span></span>
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176
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<pre style="margin: 0;">-<span id="LC176" class="line" lang="perl"></span>
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<td class="diff-line-num old old_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
177
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<pre style="margin: 0;">-<span id="LC177" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$any_feat</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
178
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<pre style="margin: 0;">-<span id="LC178" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> </INSDFeature></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
179
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<pre style="margin: 0;">-<span id="LC179" class="line" lang="perl"> <span class="p">}</span></span>
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<td class="diff-line-num old old_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
180
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<pre style="margin: 0;">-<span id="LC180" class="line" lang="perl"> <span class="nv" style="color: #008080;">$any_feat</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">true</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="181" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
181
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<pre style="margin: 0;">-<span id="LC181" class="line" lang="perl"></span>
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<td class="diff-line-num old old_line" data-linenumber="182" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
182
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<pre style="margin: 0;">-<span id="LC182" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDFeature></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="183" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
183
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<pre style="margin: 0;">-<span id="LC183" class="line" lang="perl"></span>
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<td class="diff-line-num old old_line" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
184
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<pre style="margin: 0;">-<span id="LC184" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;">#print feature key and intervals</span></span>
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<td class="diff-line-num old old_line" data-linenumber="185" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
185
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<pre style="margin: 0;">-<span id="LC185" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDFeature_key></span><span class="si" style="color: #d14;">$current_key</span><span class="s2" style="color: #d14;"></INSDFeature_key></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="186" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
186
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<pre style="margin: 0;">-<span id="LC186" class="line" lang="perl"></span>
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<td class="diff-line-num old old_line" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
187
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<pre style="margin: 0;">-<span id="LC187" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$clean_loc</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$current_loc</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="188" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
188
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<pre style="margin: 0;">-<span id="LC188" class="line" lang="perl"> <span class="nv" style="color: #008080;">$clean_loc</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">s/</</g</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
189
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<pre style="margin: 0;">-<span id="LC189" class="line" lang="perl"> <span class="nv" style="color: #008080;">$clean_loc</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">s/>/>/g</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
190
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<pre style="margin: 0;">-<span id="LC190" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDFeature_location></span><span class="si" style="color: #d14;">$clean_loc</span><span class="s2" style="color: #d14;"></INSDFeature_location></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
191
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<pre style="margin: 0;">-<span id="LC191" class="line" lang="perl"></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
192
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<pre style="margin: 0;">-<span id="LC192" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDFeature_intervals></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
193
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<pre style="margin: 0;">-<span id="LC193" class="line" lang="perl"></span>
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<td class="diff-line-num old old_line" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
194
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<pre style="margin: 0;">-<span id="LC194" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;"># parse join() order() complement() ###..### location</span></span>
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<td class="diff-line-num old old_line" data-linenumber="195" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
195
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<pre style="margin: 0;">-<span id="LC195" class="line" lang="perl"> <span class="nv" style="color: #008080;">$location_operator</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
196
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<pre style="margin: 0;">-<span id="LC196" class="line" lang="perl"> <span class="nv" style="color: #008080;">$is_comp</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="197" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
197
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<pre style="margin: 0;">-<span id="LC197" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">@theloc</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">parseloc</span> <span class="p">(</span><span class="nv" style="color: #008080;">$current_loc</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
198
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<pre style="margin: 0;">-<span id="LC198" class="line" lang="perl"></span>
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<td class="diff-line-num old old_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
199
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<pre style="margin: 0;">-<span id="LC199" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;"># convert number (dot) (dot) number to number (tab) number</span></span>
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200
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<pre style="margin: 0;">-<span id="LC200" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$numivals</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
201
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<pre style="margin: 0;">-<span id="LC201" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$prime5</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="202" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
202
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<pre style="margin: 0;">-<span id="LC202" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$prime3</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
203
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<pre style="margin: 0;">-<span id="LC203" class="line" lang="perl"> <span class="k" style="font-weight: 600;">foreach</span> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$thisloc</span> <span class="p">(</span><span class="nv" style="color: #008080;">@theloc</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
204
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<pre style="margin: 0;">-<span id="LC204" class="line" lang="perl"> <span class="nv" style="color: #008080;">$numivals</span><span class="o" style="font-weight: 600;">++</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="205" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
205
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<pre style="margin: 0;">-<span id="LC205" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDInterval></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="206" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
206
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<pre style="margin: 0;">-<span id="LC206" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$thisloc</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">/^([^.]+)\.\.([^.]+)$/</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
207
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<pre style="margin: 0;">-<span id="LC207" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$fr</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$1</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="208" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
208
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<pre style="margin: 0;">-<span id="LC208" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$to</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$2</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
209
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<pre style="margin: 0;">-<span id="LC209" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$thisloc</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">/^</</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="210" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
210
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<pre style="margin: 0;">-<span id="LC210" class="line" lang="perl"> <span class="nv" style="color: #008080;">$prime5</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">true</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
211
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<pre style="margin: 0;">-<span id="LC211" class="line" lang="perl"> <span class="p">}</span></span>
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<td class="diff-line-num old old_line" data-linenumber="212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
212
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<pre style="margin: 0;">-<span id="LC212" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$thisloc</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">/\.\.>/</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="213" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
213
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<pre style="margin: 0;">-<span id="LC213" class="line" lang="perl"> <span class="nv" style="color: #008080;">$prime3</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">true</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="214" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
214
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<pre style="margin: 0;">-<span id="LC214" class="line" lang="perl"> <span class="p">}</span></span>
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<td class="diff-line-num old old_line" data-linenumber="215" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
215
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<pre style="margin: 0;">-<span id="LC215" class="line" lang="perl"> <span class="nv" style="color: #008080;">$fr</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">s/[<>]//</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="216" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
216
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<pre style="margin: 0;">-<span id="LC216" class="line" lang="perl"> <span class="nv" style="color: #008080;">$to</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">s/[<>]//</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="217" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
217
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<pre style="margin: 0;">-<span id="LC217" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDInterval_from></span><span class="si" style="color: #d14;">$fr</span><span class="s2" style="color: #d14;"></INSDInterval_from></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="218" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
218
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<pre style="margin: 0;">-<span id="LC218" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDInterval_to></span><span class="si" style="color: #d14;">$to</span><span class="s2" style="color: #d14;"></INSDInterval_to></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="219" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
219
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<pre style="margin: 0;">-<span id="LC219" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$is_comp</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="220" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
220
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<pre style="margin: 0;">-<span id="LC220" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDInterval_iscomp value=</span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;">true</span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;">/></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="221" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
221
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<pre style="margin: 0;">-<span id="LC221" class="line" lang="perl"> <span class="p">}</span></span>
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<td class="diff-line-num old old_line" data-linenumber="222" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
222
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC222" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDInterval_accession></span><span class="si" style="color: #d14;">$accndv</span><span class="s2" style="color: #d14;"></INSDInterval_accession></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
223
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC223" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">elsif</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$thisloc</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">/^(.+)\^(.+)$/</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="224" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
224
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC224" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$fr</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$1</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="225" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
225
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<pre style="margin: 0;">-<span id="LC225" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$to</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$2</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="226" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
226
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC226" class="line" lang="perl"> <span class="nv" style="color: #008080;">$fr</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">s/[<>]//</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="227" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
227
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC227" class="line" lang="perl"> <span class="nv" style="color: #008080;">$to</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">s/[<>]//</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="228" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
228
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC228" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDInterval_from></span><span class="si" style="color: #d14;">$fr</span><span class="s2" style="color: #d14;"></INSDInterval_from></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="229" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
229
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<pre style="margin: 0;">-<span id="LC229" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDInterval_to></span><span class="si" style="color: #d14;">$to</span><span class="s2" style="color: #d14;"></INSDInterval_to></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="230" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
230
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<pre style="margin: 0;">-<span id="LC230" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$is_comp</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="231" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
231
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC231" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDInterval_iscomp value=</span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;">true</span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;">/></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="232" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
232
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<pre style="margin: 0;">-<span id="LC232" class="line" lang="perl"> <span class="p">}</span></span>
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<td class="diff-line-num old old_line" data-linenumber="233" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
233
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<pre style="margin: 0;">-<span id="LC233" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDInterval_interbp value=</span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;">true</span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;">/></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="234" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
234
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC234" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDInterval_accession></span><span class="si" style="color: #d14;">$accndv</span><span class="s2" style="color: #d14;"></INSDInterval_accession></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="235" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
235
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC235" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">elsif</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$thisloc</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">/^([^.]+)$/</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="236" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
236
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC236" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$pt</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$1</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
237
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC237" class="line" lang="perl"> <span class="nv" style="color: #008080;">$pt</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">s/[<>]//</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="238" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
238
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC238" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDInterval_point></span><span class="si" style="color: #d14;">$pt</span><span class="s2" style="color: #d14;"></INSDInterval_point></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="239" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
239
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<pre style="margin: 0;">-<span id="LC239" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDInterval_accession></span><span class="si" style="color: #d14;">$accndv</span><span class="s2" style="color: #d14;"></INSDInterval_accession></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="240" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
240
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC240" class="line" lang="perl"> <span class="p">}</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
241
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC241" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> </INSDInterval></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="242" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
242
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC242" class="line" lang="perl"> <span class="p">}</span></span>
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<td class="diff-line-num old old_line" data-linenumber="243" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
243
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC243" class="line" lang="perl"></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="244" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
244
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC244" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> </INSDFeature_intervals></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="245" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
245
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC245" class="line" lang="perl"></span>
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<td class="diff-line-num old old_line" data-linenumber="246" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
246
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC246" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$numivals</span> <span class="o" style="font-weight: 600;">></span> <span class="mi" style="color: #099;">1</span> <span class="p">)</span> <span class="p">{</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="247" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
247
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC247" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDFeature_operator></span><span class="si" style="color: #d14;">$location_operator</span><span class="s2" style="color: #d14;"></INSDFeature_operator></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="248" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
248
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC248" class="line" lang="perl"> <span class="p">}</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="249" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
249
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC249" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$prime5</span> <span class="p">)</span> <span class="p">{</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="250" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
250
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC250" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDFeature_partial5 value=</span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;">true</span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;">/></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="251" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
251
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC251" class="line" lang="perl"> <span class="p">}</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="252" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
252
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC252" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$prime3</span> <span class="p">)</span> <span class="p">{</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="253" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
253
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC253" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDFeature_partial3 value=</span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;">true</span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;">/></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="254" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
254
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC254" class="line" lang="perl"> <span class="p">}</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="255" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
255
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC255" class="line" lang="perl"></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="256" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
256
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC256" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">elsif</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$in_qual</span> <span class="p">)</span> <span class="p">{</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="257" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
257
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC257" class="line" lang="perl"></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="258" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
258
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC258" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="o" style="font-weight: 600;">!</span> <span class="nv" style="color: #008080;">$any_qual</span> <span class="p">)</span> <span class="p">{</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="259" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
259
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC259" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDFeature_quals></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="260" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
260
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC260" class="line" lang="perl"> <span class="p">}</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="261" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
261
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC261" class="line" lang="perl"> <span class="nv" style="color: #008080;">$any_qual</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">true</span><span class="p">;</span></span>
</pre>
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262
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<pre style="margin: 0;">-<span id="LC262" class="line" lang="perl"></span>
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<td class="diff-line-num old old_line" data-linenumber="263" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
263
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<pre style="margin: 0;">-<span id="LC263" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$current_val</span> <span class="ow" style="font-weight: 600;">eq</span> <span class="p">""</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="264" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
264
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<pre style="margin: 0;">-<span id="LC264" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDQualifier></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="265" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
265
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<pre style="margin: 0;">-<span id="LC265" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDQualifier_name></span><span class="si" style="color: #d14;">$current_qual</span><span class="s2" style="color: #d14;"></INSDQualifier_name></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="266" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
266
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<pre style="margin: 0;">-<span id="LC266" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> </INSDQualifier></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
267
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<pre style="margin: 0;">-<span id="LC267" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="268" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
268
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC268" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDQualifier></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="269" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
269
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC269" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDQualifier_name></span><span class="si" style="color: #d14;">$current_qual</span><span class="s2" style="color: #d14;"></INSDQualifier_name></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="270" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
270
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<pre style="margin: 0;">-<span id="LC270" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$clean_val</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$current_val</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="271" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
271
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<pre style="margin: 0;">-<span id="LC271" class="line" lang="perl"> <span class="nv" style="color: #008080;">$clean_val</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">s/</</g</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
272
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<pre style="margin: 0;">-<span id="LC272" class="line" lang="perl"> <span class="nv" style="color: #008080;">$clean_val</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">s/>/>/g</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="273" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
273
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<pre style="margin: 0;">-<span id="LC273" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDQualifier_value></span><span class="si" style="color: #d14;">$clean_val</span><span class="s2" style="color: #d14;"></INSDQualifier_value></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="274" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
274
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC274" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> </INSDQualifier></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="275" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
275
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<pre style="margin: 0;">-<span id="LC275" class="line" lang="perl"> <span class="p">}</span></span>
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276
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<pre style="margin: 0;">-<span id="LC276" class="line" lang="perl"> <span class="p">}</span></span>
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<td class="diff-line-num old old_line" data-linenumber="277" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
277
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<pre style="margin: 0;">-<span id="LC277" class="line" lang="perl"><span class="p">}</span></span>
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<td class="diff-line-num old old_line" data-linenumber="278" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
278
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<pre style="margin: 0;">-<span id="LC278" class="line" lang="perl"></span>
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<td class="diff-line-num old old_line" data-linenumber="279" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
279
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<pre style="margin: 0;">-<span id="LC279" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># initialize flags and lists at start of program</span></span>
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280
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<pre style="margin: 0;">-<span id="LC280" class="line" lang="perl"></span>
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<td class="diff-line-num old old_line" data-linenumber="281" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
281
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<pre style="margin: 0;">-<span id="LC281" class="line" lang="perl"><span class="nv" style="color: #008080;">clearflags</span> <span class="p">();</span></span>
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<td class="diff-line-num old old_line" data-linenumber="282" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
282
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<pre style="margin: 0;">-<span id="LC282" class="line" lang="perl"></span>
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<td class="diff-line-num old old_line" data-linenumber="283" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
283
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<pre style="margin: 0;">-<span id="LC283" class="line" lang="perl"><span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"><?xml version=</span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;">1.0</span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;"> encoding=</span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;">UTF-8</span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;">?></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="284" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
284
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<pre style="margin: 0;">-<span id="LC284" class="line" lang="perl"><span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"><!DOCTYPE INSDSet PUBLIC </span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;">-//NCBI//INSD INSDSeq/EN</span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;"> </span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;">https://www.ncbi.nlm.nih.gov/dtd/INSD_INSDSeq.dtd</span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;">></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<pre style="margin: 0;">-<span id="LC285" class="line" lang="perl"><span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"><INSDSet></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<pre style="margin: 0;">-<span id="LC286" class="line" lang="perl"></span>
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<pre style="margin: 0;">-<span id="LC287" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># main loop reads one line at a time</span></span>
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288
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<pre style="margin: 0;">-<span id="LC288" class="line" lang="perl"></span>
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289
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<pre style="margin: 0;">-<span id="LC289" class="line" lang="perl"><span class="k" style="font-weight: 600;">while</span> <span class="p">(</span><span class="o" style="font-weight: 600;"><></span> <span class="p">)</span> <span class="p">{</span></span>
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290
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<pre style="margin: 0;">-<span id="LC290" class="line" lang="perl"> <span class="nb" style="color: #0086b3;">chomp</span><span class="p">;</span></span>
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291
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<pre style="margin: 0;">-<span id="LC291" class="line" lang="perl"> <span class="nv" style="color: #008080;">$_</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">s/\r$//</span><span class="p">;</span></span>
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292
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<pre style="margin: 0;">-<span id="LC292" class="line" lang="perl"></span>
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293
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<pre style="margin: 0;">-<span id="LC293" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;"># first check for extra definition or taxonomy lines, otherwise clear continuation flags</span></span>
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294
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<pre style="margin: 0;">-<span id="LC294" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$in_def</span> <span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC295" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="sr" style="color: #009926;">/^ {12}(.*)$/</span> <span class="p">)</span> <span class="p">{</span></span>
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296
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<pre style="margin: 0;">-<span id="LC296" class="line" lang="perl"> <span class="nv" style="color: #008080;">$defline</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$defline</span> <span class="o" style="font-weight: 600;">.</span> <span class="p">"</span><span class="s2" style="color: #d14;"> </span><span class="p">"</span> <span class="o" style="font-weight: 600;">.</span> <span class="nv" style="color: #008080;">$1</span><span class="p">;</span></span>
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297
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<pre style="margin: 0;">-<span id="LC297" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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298
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<pre style="margin: 0;">-<span id="LC298" class="line" lang="perl"> <span class="nv" style="color: #008080;">$in_def</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC299" class="line" lang="perl"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC300" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">elsif</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$in_tax</span> <span class="p">)</span> <span class="p">{</span></span>
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301
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<pre style="margin: 0;">-<span id="LC301" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="sr" style="color: #009926;">/^ {12}(.*)$/</span> <span class="p">)</span> <span class="p">{</span></span>
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302
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<pre style="margin: 0;">-<span id="LC302" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$taxonomy</span> <span class="ow" style="font-weight: 600;">eq</span> <span class="p">""</span> <span class="p">)</span> <span class="p">{</span></span>
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303
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<pre style="margin: 0;">-<span id="LC303" class="line" lang="perl"> <span class="nv" style="color: #008080;">$taxonomy</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$1</span><span class="p">;</span></span>
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304
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<pre style="margin: 0;">-<span id="LC304" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="305" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
305
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<pre style="margin: 0;">-<span id="LC305" class="line" lang="perl"> <span class="nv" style="color: #008080;">$taxonomy</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$taxonomy</span> <span class="o" style="font-weight: 600;">.</span> <span class="p">"</span><span class="s2" style="color: #d14;"> </span><span class="p">"</span> <span class="o" style="font-weight: 600;">.</span> <span class="nv" style="color: #008080;">$1</span><span class="p">;</span></span>
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306
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<pre style="margin: 0;">-<span id="LC306" class="line" lang="perl"> <span class="p">}</span></span>
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307
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<pre style="margin: 0;">-<span id="LC307" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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308
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<pre style="margin: 0;">-<span id="LC308" class="line" lang="perl"> <span class="nv" style="color: #008080;">$in_tax</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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309
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<pre style="margin: 0;">-<span id="LC309" class="line" lang="perl"> <span class="p">}</span></span>
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310
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<pre style="margin: 0;">-<span id="LC310" class="line" lang="perl"> <span class="p">}</span></span>
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311
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<pre style="margin: 0;">-<span id="LC311" class="line" lang="perl"></span>
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312
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<pre style="margin: 0;">-<span id="LC312" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$in_def</span> <span class="o" style="font-weight: 600;">||</span> <span class="nv" style="color: #008080;">$in_tax</span> <span class="p">)</span> <span class="p">{</span></span>
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313
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<pre style="margin: 0;">-<span id="LC313" class="line" lang="perl"></span>
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314
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<pre style="margin: 0;">-<span id="LC314" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;"># continuation lines taken care of above</span></span>
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315
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<pre style="margin: 0;">-<span id="LC315" class="line" lang="perl"></span>
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316
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<pre style="margin: 0;">-<span id="LC316" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">elsif</span> <span class="p">(</span> <span class="sr" style="color: #009926;">/^LOCUS\s+(\S*).*$/</span> <span class="p">)</span> <span class="p">{</span></span>
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317
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<pre style="margin: 0;">-<span id="LC317" class="line" lang="perl"></span>
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318
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<pre style="margin: 0;">-<span id="LC318" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;"># record locus</span></span>
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<td class="diff-line-num old old_line" data-linenumber="319" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
319
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<pre style="margin: 0;">-<span id="LC319" class="line" lang="perl"> <span class="nv" style="color: #008080;">$locus</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$1</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="320" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
320
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<pre style="margin: 0;">-<span id="LC320" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="sr" style="color: #009926;">/ (\d+) bp /</span> <span class="o" style="font-weight: 600;">||</span> <span class="sr" style="color: #009926;">/ (\d+) aa /</span> <span class="p">)</span> <span class="p">{</span></span>
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321
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<pre style="margin: 0;">-<span id="LC321" class="line" lang="perl"> <span class="nv" style="color: #008080;">$length</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$1</span><span class="p">;</span></span>
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322
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<pre style="margin: 0;">-<span id="LC322" class="line" lang="perl"> <span class="p">}</span></span>
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323
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<pre style="margin: 0;">-<span id="LC323" class="line" lang="perl"></span>
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<td class="diff-line-num old old_line" data-linenumber="324" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
324
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<pre style="margin: 0;">-<span id="LC324" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="sr" style="color: #009926;">/^.*\s(\S+\s+\S+\s+\S+\s+\d+-\S+-\d+)$/</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="325" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
325
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<pre style="margin: 0;">-<span id="LC325" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$tail</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$1</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="326" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
326
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<pre style="margin: 0;">-<span id="LC326" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$tail</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">/^(\S*)\s+(\S*)\s+(\S*)\s+(\d*-\S*-\d*)$/</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="327" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
327
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<pre style="margin: 0;">-<span id="LC327" class="line" lang="perl"> <span class="nv" style="color: #008080;">$moltype</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$1</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="328" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
328
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<pre style="margin: 0;">-<span id="LC328" class="line" lang="perl"> <span class="nv" style="color: #008080;">$topology</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$2</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="329" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
329
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<pre style="margin: 0;">-<span id="LC329" class="line" lang="perl"> <span class="nv" style="color: #008080;">$division</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$3</span><span class="p">;</span></span>
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330
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<pre style="margin: 0;">-<span id="LC330" class="line" lang="perl"> <span class="nv" style="color: #008080;">$update_date</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$4</span><span class="p">;</span></span>
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331
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<pre style="margin: 0;">-<span id="LC331" class="line" lang="perl"> <span class="nv" style="color: #008080;">$moltype</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">uc</span> <span class="nv" style="color: #008080;">$moltype</span><span class="p">;</span></span>
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332
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<pre style="margin: 0;">-<span id="LC332" class="line" lang="perl"> <span class="p">}</span></span>
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333
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<pre style="margin: 0;">-<span id="LC333" class="line" lang="perl"> <span class="p">}</span></span>
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334
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<pre style="margin: 0;">-<span id="LC334" class="line" lang="perl"></span>
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335
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<pre style="margin: 0;">-<span id="LC335" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDSeq></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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336
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<pre style="margin: 0;">-<span id="LC336" class="line" lang="perl"></span>
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337
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<pre style="margin: 0;">-<span id="LC337" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDSeq_locus></span><span class="si" style="color: #d14;">$locus</span><span class="s2" style="color: #d14;"></INSDSeq_locus></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="338" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
338
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<pre style="margin: 0;">-<span id="LC338" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDSeq_length></span><span class="si" style="color: #d14;">$length</span><span class="s2" style="color: #d14;"></INSDSeq_length></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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339
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<pre style="margin: 0;">-<span id="LC339" class="line" lang="perl"></span>
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340
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<pre style="margin: 0;">-<span id="LC340" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$moltype</span> <span class="ow" style="font-weight: 600;">ne</span> <span class="p">""</span> <span class="p">)</span> <span class="p">{</span></span>
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341
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<pre style="margin: 0;">-<span id="LC341" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDSeq_moltype></span><span class="si" style="color: #d14;">$moltype</span><span class="s2" style="color: #d14;"></INSDSeq_moltype></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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342
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<pre style="margin: 0;">-<span id="LC342" class="line" lang="perl"> <span class="p">}</span></span>
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343
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<pre style="margin: 0;">-<span id="LC343" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$topology</span> <span class="ow" style="font-weight: 600;">ne</span> <span class="p">""</span> <span class="p">)</span> <span class="p">{</span></span>
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344
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<pre style="margin: 0;">-<span id="LC344" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDSeq_topology></span><span class="si" style="color: #d14;">$topology</span><span class="s2" style="color: #d14;"></INSDSeq_topology></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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345
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<pre style="margin: 0;">-<span id="LC345" class="line" lang="perl"> <span class="p">}</span></span>
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346
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<pre style="margin: 0;">-<span id="LC346" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$division</span> <span class="ow" style="font-weight: 600;">ne</span> <span class="p">""</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="347" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
347
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<pre style="margin: 0;">-<span id="LC347" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDSeq_division></span><span class="si" style="color: #d14;">$division</span><span class="s2" style="color: #d14;"></INSDSeq_division></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="348" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
348
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<pre style="margin: 0;">-<span id="LC348" class="line" lang="perl"> <span class="p">}</span></span>
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<td class="diff-line-num old old_line" data-linenumber="349" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
349
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<pre style="margin: 0;">-<span id="LC349" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$update_date</span> <span class="ow" style="font-weight: 600;">ne</span> <span class="p">""</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="350" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
350
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<pre style="margin: 0;">-<span id="LC350" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDSeq_update-date></span><span class="si" style="color: #d14;">$update_date</span><span class="s2" style="color: #d14;"></INSDSeq_update-date></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="351" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
351
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<pre style="margin: 0;">-<span id="LC351" class="line" lang="perl"> <span class="p">}</span></span>
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352
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<pre style="margin: 0;">-<span id="LC352" class="line" lang="perl"></span>
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<pre style="margin: 0;">-<span id="LC353" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">elsif</span> <span class="p">(</span> <span class="sr" style="color: #009926;">/^DEFINITION\s*(.*).*$/</span> <span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC354" class="line" lang="perl"></span>
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<pre style="margin: 0;">-<span id="LC355" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;"># record first line of definition line</span></span>
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356
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<pre style="margin: 0;">-<span id="LC356" class="line" lang="perl"> <span class="nv" style="color: #008080;">$defline</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$1</span><span class="p">;</span></span>
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357
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<pre style="margin: 0;">-<span id="LC357" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;"># next line with leading spaces will be continuation of definition line</span></span>
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358
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<pre style="margin: 0;">-<span id="LC358" class="line" lang="perl"> <span class="nv" style="color: #008080;">$in_def</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">true</span><span class="p">;</span></span>
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359
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<pre style="margin: 0;">-<span id="LC359" class="line" lang="perl"></span>
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360
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<pre style="margin: 0;">-<span id="LC360" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">elsif</span> <span class="p">(</span> <span class="sr" style="color: #009926;">/^ACCESSION\s*(\S*).*$/</span> <span class="p">)</span> <span class="p">{</span></span>
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361
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<pre style="margin: 0;">-<span id="LC361" class="line" lang="perl"></span>
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362
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<pre style="margin: 0;">-<span id="LC362" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;"># record accession</span></span>
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363
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<pre style="margin: 0;">-<span id="LC363" class="line" lang="perl"> <span class="nv" style="color: #008080;">$accn</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$1</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC364" class="line" lang="perl"></span>
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365
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<pre style="margin: 0;">-<span id="LC365" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">elsif</span> <span class="p">(</span> <span class="sr" style="color: #009926;">/^VERSION\s*(\S*).*$/</span> <span class="p">)</span> <span class="p">{</span></span>
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366
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<pre style="margin: 0;">-<span id="LC366" class="line" lang="perl"></span>
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367
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<pre style="margin: 0;">-<span id="LC367" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;"># record accession.version</span></span>
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368
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<pre style="margin: 0;">-<span id="LC368" class="line" lang="perl"> <span class="nv" style="color: #008080;">$accndv</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$1</span><span class="p">;</span></span>
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369
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<pre style="margin: 0;">-<span id="LC369" class="line" lang="perl"></span>
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370
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<pre style="margin: 0;">-<span id="LC370" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">elsif</span> <span class="p">(</span> <span class="sr" style="color: #009926;">/^SOURCE\s*(.*)$/</span> <span class="p">)</span> <span class="p">{</span></span>
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371
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<pre style="margin: 0;">-<span id="LC371" class="line" lang="perl"></span>
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372
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<pre style="margin: 0;">-<span id="LC372" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;"># record source</span></span>
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373
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<pre style="margin: 0;">-<span id="LC373" class="line" lang="perl"> <span class="nv" style="color: #008080;">$source</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$1</span><span class="p">;</span></span>
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374
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<pre style="margin: 0;">-<span id="LC374" class="line" lang="perl"></span>
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375
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<pre style="margin: 0;">-<span id="LC375" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">elsif</span> <span class="p">(</span> <span class="sr" style="color: #009926;">/^ {1,3}ORGANISM\s+(.*)$/</span> <span class="p">)</span> <span class="p">{</span></span>
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376
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<pre style="margin: 0;">-<span id="LC376" class="line" lang="perl"></span>
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377
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<pre style="margin: 0;">-<span id="LC377" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;"># record organism</span></span>
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378
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<pre style="margin: 0;">-<span id="LC378" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$organism</span> <span class="ow" style="font-weight: 600;">eq</span> <span class="p">""</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="379" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
379
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<pre style="margin: 0;">-<span id="LC379" class="line" lang="perl"> <span class="nv" style="color: #008080;">$organism</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$1</span><span class="p">;</span></span>
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380
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<pre style="margin: 0;">-<span id="LC380" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$organism</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">/^([^(]*) \(.*\)/</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="381" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
381
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<pre style="margin: 0;">-<span id="LC381" class="line" lang="perl"> <span class="nv" style="color: #008080;">$organism</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$1</span><span class="p">;</span></span>
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382
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<pre style="margin: 0;">-<span id="LC382" class="line" lang="perl"> <span class="p">}</span></span>
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383
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<pre style="margin: 0;">-<span id="LC383" class="line" lang="perl"> <span class="p">}</span></span>
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<td class="diff-line-num old old_line" data-linenumber="384" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
384
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<pre style="margin: 0;">-<span id="LC384" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;"># next line with leading spaces will be start of taxonomy</span></span>
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385
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<pre style="margin: 0;">-<span id="LC385" class="line" lang="perl"> <span class="nv" style="color: #008080;">$in_tax</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">true</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="386" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
386
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<pre style="margin: 0;">-<span id="LC386" class="line" lang="perl"></span>
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<td class="diff-line-num old old_line" data-linenumber="387" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
387
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<pre style="margin: 0;">-<span id="LC387" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">elsif</span> <span class="p">(</span> <span class="sr" style="color: #009926;">/^FEATURES\s+.*$/</span> <span class="p">)</span> <span class="p">{</span></span>
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388
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<pre style="margin: 0;">-<span id="LC388" class="line" lang="perl"></span>
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<td class="diff-line-num old old_line" data-linenumber="389" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
389
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<pre style="margin: 0;">-<span id="LC389" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;"># beginning of feature table, flags already set up</span></span>
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390
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<pre style="margin: 0;">-<span id="LC390" class="line" lang="perl"></span>
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391
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<pre style="margin: 0;">-<span id="LC391" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;"># first print saved fields</span></span>
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<td class="diff-line-num old old_line" data-linenumber="392" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
392
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<pre style="margin: 0;">-<span id="LC392" class="line" lang="perl"> <span class="nv" style="color: #008080;">$defline</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">s/\.$//</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="393" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
393
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<pre style="margin: 0;">-<span id="LC393" class="line" lang="perl"> <span class="nv" style="color: #008080;">$defline</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">s/</</g</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="394" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
394
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<pre style="margin: 0;">-<span id="LC394" class="line" lang="perl"> <span class="nv" style="color: #008080;">$defline</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">s/>/>/g</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="395" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
395
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<pre style="margin: 0;">-<span id="LC395" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$defline</span> <span class="ow" style="font-weight: 600;">ne</span> <span class="p">""</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="396" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
396
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<pre style="margin: 0;">-<span id="LC396" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDSeq_definition></span><span class="si" style="color: #d14;">$defline</span><span class="s2" style="color: #d14;"></INSDSeq_definition></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="397" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
397
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<pre style="margin: 0;">-<span id="LC397" class="line" lang="perl"> <span class="p">}</span></span>
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<td class="diff-line-num old old_line" data-linenumber="398" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
398
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<pre style="margin: 0;">-<span id="LC398" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$accn</span> <span class="ow" style="font-weight: 600;">ne</span> <span class="p">""</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="399" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
399
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<pre style="margin: 0;">-<span id="LC399" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDSeq_primary-accession></span><span class="si" style="color: #d14;">$accn</span><span class="s2" style="color: #d14;"></INSDSeq_primary-accession></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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400
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<pre style="margin: 0;">-<span id="LC400" class="line" lang="perl"> <span class="p">}</span></span>
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401
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<pre style="margin: 0;">-<span id="LC401" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$accndv</span> <span class="ow" style="font-weight: 600;">ne</span> <span class="p">""</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="402" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
402
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<pre style="margin: 0;">-<span id="LC402" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDSeq_accession-version></span><span class="si" style="color: #d14;">$accndv</span><span class="s2" style="color: #d14;"></INSDSeq_accession-version></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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403
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<pre style="margin: 0;">-<span id="LC403" class="line" lang="perl"> <span class="p">}</span></span>
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404
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<pre style="margin: 0;">-<span id="LC404" class="line" lang="perl"></span>
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405
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<pre style="margin: 0;">-<span id="LC405" class="line" lang="perl"> <span class="nv" style="color: #008080;">$in_feat</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">true</span><span class="p">;</span></span>
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406
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<pre style="margin: 0;">-<span id="LC406" class="line" lang="perl"></span>
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407
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<pre style="margin: 0;">-<span id="LC407" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$source</span> <span class="ow" style="font-weight: 600;">ne</span> <span class="p">""</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="408" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
408
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<pre style="margin: 0;">-<span id="LC408" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDSeq_source></span><span class="si" style="color: #d14;">$source</span><span class="s2" style="color: #d14;"></INSDSeq_source></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="409" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
409
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<pre style="margin: 0;">-<span id="LC409" class="line" lang="perl"> <span class="p">}</span></span>
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<td class="diff-line-num old old_line" data-linenumber="410" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
410
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<pre style="margin: 0;">-<span id="LC410" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$organism</span> <span class="ow" style="font-weight: 600;">ne</span> <span class="p">""</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="411" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
411
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<pre style="margin: 0;">-<span id="LC411" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDSeq_organism></span><span class="si" style="color: #d14;">$organism</span><span class="s2" style="color: #d14;"></INSDSeq_organism></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="412" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
412
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<pre style="margin: 0;">-<span id="LC412" class="line" lang="perl"> <span class="p">}</span></span>
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413
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<pre style="margin: 0;">-<span id="LC413" class="line" lang="perl"> <span class="nv" style="color: #008080;">$taxonomy</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">s/\.$//</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="414" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
414
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<pre style="margin: 0;">-<span id="LC414" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$taxonomy</span> <span class="ow" style="font-weight: 600;">ne</span> <span class="p">""</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="415" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
415
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<pre style="margin: 0;">-<span id="LC415" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDSeq_taxonomy></span><span class="si" style="color: #d14;">$taxonomy</span><span class="s2" style="color: #d14;"></INSDSeq_taxonomy></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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416
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<pre style="margin: 0;">-<span id="LC416" class="line" lang="perl"> <span class="p">}</span></span>
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417
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC417" class="line" lang="perl"></span>
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<td class="diff-line-num old old_line" data-linenumber="418" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
418
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC418" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDSeq_feature-table></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<td class="diff-line-num old old_line" data-linenumber="419" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
419
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<pre style="margin: 0;">-<span id="LC419" class="line" lang="perl"></span>
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<td class="diff-line-num old old_line" data-linenumber="420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
420
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<pre style="margin: 0;">-<span id="LC420" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">elsif</span> <span class="p">(</span> <span class="sr" style="color: #009926;">/^ORIGIN\s*.*$/</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="421" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
421
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<pre style="margin: 0;">-<span id="LC421" class="line" lang="perl"></span>
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<td class="diff-line-num old old_line" data-linenumber="422" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
422
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<pre style="margin: 0;">-<span id="LC422" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;"># end of feature table, print final newline</span></span>
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<pre style="margin: 0;">-<span id="LC423" class="line" lang="perl"> <span class="nv" style="color: #008080;">flushline</span> <span class="p">();</span></span>
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424
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<pre style="margin: 0;">-<span id="LC424" class="line" lang="perl"></span>
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425
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<pre style="margin: 0;">-<span id="LC425" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$in_feat</span> <span class="p">)</span> <span class="p">{</span></span>
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426
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<pre style="margin: 0;">-<span id="LC426" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$any_qual</span> <span class="p">)</span> <span class="p">{</span></span>
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427
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<pre style="margin: 0;">-<span id="LC427" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> </INSDFeature_quals></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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428
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<pre style="margin: 0;">-<span id="LC428" class="line" lang="perl"> <span class="nv" style="color: #008080;">$any_qual</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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429
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<pre style="margin: 0;">-<span id="LC429" class="line" lang="perl"> <span class="p">}</span></span>
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430
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<pre style="margin: 0;">-<span id="LC430" class="line" lang="perl"></span>
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431
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<pre style="margin: 0;">-<span id="LC431" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> </INSDFeature></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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432
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<pre style="margin: 0;">-<span id="LC432" class="line" lang="perl"></span>
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433
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<pre style="margin: 0;">-<span id="LC433" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> </INSDSeq_feature-table></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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434
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<pre style="margin: 0;">-<span id="LC434" class="line" lang="perl"> <span class="p">}</span></span>
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435
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<pre style="margin: 0;">-<span id="LC435" class="line" lang="perl"></span>
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436
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<pre style="margin: 0;">-<span id="LC436" class="line" lang="perl"> <span class="nv" style="color: #008080;">$in_feat</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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437
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<pre style="margin: 0;">-<span id="LC437" class="line" lang="perl"> <span class="nv" style="color: #008080;">$in_key</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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438
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<pre style="margin: 0;">-<span id="LC438" class="line" lang="perl"> <span class="nv" style="color: #008080;">$in_qual</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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439
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<pre style="margin: 0;">-<span id="LC439" class="line" lang="perl"> <span class="nv" style="color: #008080;">$no_space</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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440
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<pre style="margin: 0;">-<span id="LC440" class="line" lang="perl"> <span class="nv" style="color: #008080;">$in_seq</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">true</span><span class="p">;</span></span>
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441
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<pre style="margin: 0;">-<span id="LC441" class="line" lang="perl"> <span class="nv" style="color: #008080;">$in_con</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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442
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<pre style="margin: 0;">-<span id="LC442" class="line" lang="perl"></span>
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443
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<pre style="margin: 0;">-<span id="LC443" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">elsif</span> <span class="p">(</span> <span class="sr" style="color: #009926;">/^CONTIG\s*.*$/</span> <span class="p">)</span> <span class="p">{</span></span>
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444
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<pre style="margin: 0;">-<span id="LC444" class="line" lang="perl"></span>
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445
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<pre style="margin: 0;">-<span id="LC445" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;"># end of feature table, print final newline</span></span>
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446
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<pre style="margin: 0;">-<span id="LC446" class="line" lang="perl"> <span class="nv" style="color: #008080;">flushline</span> <span class="p">();</span></span>
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<pre style="margin: 0;">-<span id="LC447" class="line" lang="perl"></span>
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<pre style="margin: 0;">-<span id="LC448" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$in_feat</span> <span class="p">)</span> <span class="p">{</span></span>
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449
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<pre style="margin: 0;">-<span id="LC449" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$any_qual</span> <span class="p">)</span> <span class="p">{</span></span>
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450
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<pre style="margin: 0;">-<span id="LC450" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> </INSDFeature_quals></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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451
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<pre style="margin: 0;">-<span id="LC451" class="line" lang="perl"> <span class="nv" style="color: #008080;">$any_qual</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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452
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<pre style="margin: 0;">-<span id="LC452" class="line" lang="perl"> <span class="p">}</span></span>
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453
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<pre style="margin: 0;">-<span id="LC453" class="line" lang="perl"></span>
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454
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<pre style="margin: 0;">-<span id="LC454" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> </INSDFeature></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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455
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<pre style="margin: 0;">-<span id="LC455" class="line" lang="perl"></span>
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456
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<pre style="margin: 0;">-<span id="LC456" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> </INSDSeq_feature-table></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<pre style="margin: 0;">-<span id="LC457" class="line" lang="perl"> <span class="p">}</span></span>
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458
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<pre style="margin: 0;">-<span id="LC458" class="line" lang="perl"></span>
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459
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<pre style="margin: 0;">-<span id="LC459" class="line" lang="perl"> <span class="nv" style="color: #008080;">$in_feat</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC460" class="line" lang="perl"> <span class="nv" style="color: #008080;">$in_key</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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461
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<pre style="margin: 0;">-<span id="LC461" class="line" lang="perl"> <span class="nv" style="color: #008080;">$in_qual</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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462
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<pre style="margin: 0;">-<span id="LC462" class="line" lang="perl"> <span class="nv" style="color: #008080;">$no_space</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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463
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<pre style="margin: 0;">-<span id="LC463" class="line" lang="perl"> <span class="nv" style="color: #008080;">$in_seq</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC464" class="line" lang="perl"> <span class="nv" style="color: #008080;">$in_con</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">true</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC465" class="line" lang="perl"></span>
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<pre style="margin: 0;">-<span id="LC466" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">elsif</span> <span class="p">(</span> <span class="sr" style="color: #009926;">/^\/\/\.*/</span> <span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC467" class="line" lang="perl"></span>
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<pre style="margin: 0;">-<span id="LC468" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;"># at end-of-record double slash</span></span>
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469
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<pre style="margin: 0;">-<span id="LC469" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$sequence</span> <span class="ow" style="font-weight: 600;">ne</span> <span class="p">""</span> <span class="p">)</span> <span class="p">{</span></span>
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470
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<pre style="margin: 0;">-<span id="LC470" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> <INSDSeq_sequence></span><span class="si" style="color: #d14;">$sequence</span><span class="s2" style="color: #d14;"></INSDSeq_sequence></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<pre style="margin: 0;">-<span id="LC471" class="line" lang="perl"> <span class="p">}</span></span>
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472
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<pre style="margin: 0;">-<span id="LC472" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"> </INSDSeq></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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473
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<pre style="margin: 0;">-<span id="LC473" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;"># reset variables for catenated flatfiles</span></span>
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<pre style="margin: 0;">-<span id="LC474" class="line" lang="perl"> <span class="nv" style="color: #008080;">clearflags</span> <span class="p">();</span></span>
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<pre style="margin: 0;">-<span id="LC475" class="line" lang="perl"></span>
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<pre style="margin: 0;">-<span id="LC476" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">elsif</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$in_seq</span> <span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC477" class="line" lang="perl"></span>
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478
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<pre style="margin: 0;">-<span id="LC478" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="sr" style="color: #009926;">/^\s+\d+ (.*)$/</span> <span class="o" style="font-weight: 600;">||</span> <span class="sr" style="color: #009926;">/^\s+(.*)\s+\d+$/</span> <span class="p">)</span> <span class="p">{</span></span>
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479
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<pre style="margin: 0;">-<span id="LC479" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;"># record sequence</span></span>
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<pre style="margin: 0;">-<span id="LC480" class="line" lang="perl"> <span class="nv" style="color: #008080;">$curr_seq</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$1</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC481" class="line" lang="perl"> <span class="nv" style="color: #008080;">$curr_seq</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">s/ //g</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC482" class="line" lang="perl"> <span class="nv" style="color: #008080;">$curr_seq</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">lc</span> <span class="nv" style="color: #008080;">$curr_seq</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC483" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$sequence</span> <span class="ow" style="font-weight: 600;">eq</span> <span class="p">""</span> <span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC484" class="line" lang="perl"> <span class="nv" style="color: #008080;">$sequence</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$curr_seq</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC485" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC486" class="line" lang="perl"> <span class="nv" style="color: #008080;">$sequence</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$sequence</span> <span class="o" style="font-weight: 600;">.</span> <span class="nv" style="color: #008080;">$curr_seq</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC487" class="line" lang="perl"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC488" class="line" lang="perl"> <span class="p">}</span></span>
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489
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<pre style="margin: 0;">-<span id="LC489" class="line" lang="perl"></span>
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<pre style="margin: 0;">-<span id="LC490" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">elsif</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$in_con</span> <span class="p">)</span> <span class="p">{</span></span>
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491
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<pre style="margin: 0;">-<span id="LC491" class="line" lang="perl"></span>
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492
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<pre style="margin: 0;">-<span id="LC492" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">elsif</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$in_feat</span> <span class="p">)</span> <span class="p">{</span></span>
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493
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<pre style="margin: 0;">-<span id="LC493" class="line" lang="perl"></span>
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<pre style="margin: 0;">-<span id="LC494" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="sr" style="color: #009926;">/^ {1,10}(\w+)\s+(.*)$/</span> <span class="p">)</span> <span class="p">{</span></span>
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495
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<pre style="margin: 0;">-<span id="LC495" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;"># new feature key and location</span></span>
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496
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<pre style="margin: 0;">-<span id="LC496" class="line" lang="perl"> <span class="nv" style="color: #008080;">flushline</span> <span class="p">();</span></span>
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497
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<pre style="margin: 0;">-<span id="LC497" class="line" lang="perl"></span>
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498
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<pre style="margin: 0;">-<span id="LC498" class="line" lang="perl"> <span class="nv" style="color: #008080;">$in_key</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">true</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="499" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
499
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<pre style="margin: 0;">-<span id="LC499" class="line" lang="perl"> <span class="nv" style="color: #008080;">$in_qual</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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500
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<pre style="margin: 0;">-<span id="LC500" class="line" lang="perl"> <span class="nv" style="color: #008080;">$current_key</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$1</span><span class="p">;</span></span>
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501
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<pre style="margin: 0;">-<span id="LC501" class="line" lang="perl"> <span class="nv" style="color: #008080;">$current_loc</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$2</span><span class="p">;</span></span>
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502
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<pre style="margin: 0;">-<span id="LC502" class="line" lang="perl"></span>
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503
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<pre style="margin: 0;">-<span id="LC503" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">elsif</span> <span class="p">(</span> <span class="sr" style="color: #009926;">/^\s+\/(\w+)=(.*)$/</span> <span class="p">)</span> <span class="p">{</span></span>
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504
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<pre style="margin: 0;">-<span id="LC504" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;"># new qualifier</span></span>
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505
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<pre style="margin: 0;">-<span id="LC505" class="line" lang="perl"> <span class="nv" style="color: #008080;">flushline</span> <span class="p">();</span></span>
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506
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<pre style="margin: 0;">-<span id="LC506" class="line" lang="perl"></span>
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507
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<pre style="margin: 0;">-<span id="LC507" class="line" lang="perl"> <span class="nv" style="color: #008080;">$in_key</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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508
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<pre style="margin: 0;">-<span id="LC508" class="line" lang="perl"> <span class="nv" style="color: #008080;">$in_qual</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">true</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="509" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
509
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<pre style="margin: 0;">-<span id="LC509" class="line" lang="perl"> <span class="nv" style="color: #008080;">$current_qual</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$1</span><span class="p">;</span></span>
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510
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<pre style="margin: 0;">-<span id="LC510" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;"># remove leading double quote</span></span>
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<td class="diff-line-num old old_line" data-linenumber="511" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
511
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<pre style="margin: 0;">-<span id="LC511" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$val</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$2</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="512" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
512
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<pre style="margin: 0;">-<span id="LC512" class="line" lang="perl"> <span class="nv" style="color: #008080;">$val</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">s/\"//g</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="513" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
513
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<pre style="margin: 0;">-<span id="LC513" class="line" lang="perl"> <span class="nv" style="color: #008080;">$current_val</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$val</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="514" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
514
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<pre style="margin: 0;">-<span id="LC514" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$current_qual</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">/(?:translation|transcription|peptide|anticodon)/</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="515" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
515
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<pre style="margin: 0;">-<span id="LC515" class="line" lang="perl"> <span class="nv" style="color: #008080;">$no_space</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">true</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="516" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
516
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<pre style="margin: 0;">-<span id="LC516" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC517" class="line" lang="perl"> <span class="nv" style="color: #008080;">$no_space</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC518" class="line" lang="perl"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC519" class="line" lang="perl"></span>
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<pre style="margin: 0;">-<span id="LC520" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">elsif</span> <span class="p">(</span> <span class="sr" style="color: #009926;">/^\s+\/(\w+)$/</span> <span class="p">)</span> <span class="p">{</span></span>
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521
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<pre style="margin: 0;">-<span id="LC521" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;"># new singleton qualifier - e.g., trans-splicing, pseudo</span></span>
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<pre style="margin: 0;">-<span id="LC522" class="line" lang="perl"> <span class="nv" style="color: #008080;">flushline</span> <span class="p">();</span></span>
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<pre style="margin: 0;">-<span id="LC523" class="line" lang="perl"></span>
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524
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<pre style="margin: 0;">-<span id="LC524" class="line" lang="perl"> <span class="nv" style="color: #008080;">$in_key</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC525" class="line" lang="perl"> <span class="nv" style="color: #008080;">$in_qual</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">true</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC526" class="line" lang="perl"> <span class="nv" style="color: #008080;">$current_qual</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$1</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC527" class="line" lang="perl"> <span class="nv" style="color: #008080;">$current_val</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">"";</span></span>
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<pre style="margin: 0;">-<span id="LC528" class="line" lang="perl"> <span class="nv" style="color: #008080;">$no_space</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">false</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC529" class="line" lang="perl"></span>
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<pre style="margin: 0;">-<span id="LC530" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">elsif</span> <span class="p">(</span> <span class="sr" style="color: #009926;">/^\s+(.*)$/</span> <span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC531" class="line" lang="perl"></span>
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<pre style="margin: 0;">-<span id="LC532" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$in_key</span> <span class="p">)</span> <span class="p">{</span></span>
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533
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<pre style="margin: 0;">-<span id="LC533" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;"># continuation of feature location</span></span>
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534
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<pre style="margin: 0;">-<span id="LC534" class="line" lang="perl"> <span class="nv" style="color: #008080;">$current_loc</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$current_loc</span> <span class="o" style="font-weight: 600;">.</span> <span class="nv" style="color: #008080;">$1</span><span class="p">;</span></span>
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535
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<pre style="margin: 0;">-<span id="LC535" class="line" lang="perl"></span>
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<pre style="margin: 0;">-<span id="LC536" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">elsif</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$in_qual</span> <span class="p">)</span> <span class="p">{</span></span>
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537
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<pre style="margin: 0;">-<span id="LC537" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;"># continuation of qualifier</span></span>
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538
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<pre style="margin: 0;">-<span id="LC538" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;"># remove trailing double quote</span></span>
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<pre style="margin: 0;">-<span id="LC539" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$val</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$1</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC540" class="line" lang="perl"> <span class="nv" style="color: #008080;">$val</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">s/\"//g</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC541" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$no_space</span> <span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC542" class="line" lang="perl"> <span class="nv" style="color: #008080;">$current_val</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$current_val</span> <span class="o" style="font-weight: 600;">.</span> <span class="nv" style="color: #008080;">$val</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC543" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">elsif</span> <span class="p">(</span> <span class="nv" style="color: #008080;">$current_val</span> <span class="o" style="font-weight: 600;">=~</span> <span class="sr" style="color: #009926;">/-$/</span> <span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC544" class="line" lang="perl"> <span class="nv" style="color: #008080;">$current_val</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$current_val</span> <span class="o" style="font-weight: 600;">.</span> <span class="nv" style="color: #008080;">$val</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC545" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC546" class="line" lang="perl"> <span class="nv" style="color: #008080;">$current_val</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$current_val</span> <span class="o" style="font-weight: 600;">.</span> <span class="p">"</span><span class="s2" style="color: #d14;"> </span><span class="p">"</span> <span class="o" style="font-weight: 600;">.</span> <span class="nv" style="color: #008080;">$val</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC547" class="line" lang="perl"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC548" class="line" lang="perl"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC549" class="line" lang="perl"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC550" class="line" lang="perl"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC551" class="line" lang="perl"><span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC552" class="line" lang="perl"></span>
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<pre style="margin: 0;">-<span id="LC553" class="line" lang="perl"><span class="k" style="font-weight: 600;">print</span> <span class="p">"</span><span class="s2" style="color: #d14;"></INSDSet></span><span class="se" style="color: #d14;">\n</span><span class="p">";</span></span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/sh</span></span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="shell">xtract <span class="nt" style="color: #000080;">-g2x</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$@</span><span class="s2" style="color: #d14;">"</span></span></pre>
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<a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/compare/36914b997fe7b6f71dbe208a0f2e29e2ca47f056...3ff79da3f1d0d11d2976f414edfd56adcf372b89#f555edcfb71bb400c39b45118f326189205574d8"><strong>hlp-xtract.txt</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -126,6 +126,16 @@ Elink -cited Equivalent</td>
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="plaintext"> elink_cited |</span>
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127
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="plaintext"> efetch -format abstract</span>
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="plaintext">Combining Independent Queries</span>
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="plaintext"> esearch -db protein -query "amyloid* [PROT]" |</span>
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132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="plaintext"> elink -target pubmed |</span>
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133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="plaintext"> esearch -db gene -query "apo* [GENE]" |</span>
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134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="plaintext"> elink -target pubmed |</span>
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135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="plaintext"> esearch -query "(#3) AND (#6)" |</span>
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136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="plaintext"> efetch -format docsum |</span>
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137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="plaintext"> xtract -pattern DocumentSummary -element Id Title</span>
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138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="plaintext"></span>
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129
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139
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="plaintext">PMC</span>
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130
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140
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="plaintext"></span>
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131
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141
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="plaintext">Formatting Tag Removal</span>
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<a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/compare/36914b997fe7b6f71dbe208a0f2e29e2ca47f056...3ff79da3f1d0d11d2976f414edfd56adcf372b89#00d70479e6392030e74da19a0fce67470c1e0e0e"><strong>sort-uniq-count</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -10,4 +10,4 @@ then</td>
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10
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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11
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="shell"><span class="nb" style="color: #0086b3;">sort</span> <span class="s2" style="color: #d14;">"-</span><span class="nv" style="color: #008080;">$flags</span><span class="s2" style="color: #d14;">"</span> |</span>
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12
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="shell"><span class="nb" style="color: #0086b3;">uniq</span> <span class="nt" style="color: #000080;">-i</span> <span class="nt" style="color: #000080;">-c</span> |</span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="shell"><span class="idiff left">perl </span><span class="nt" style="color: #000080;"><span class="idiff">-pe</span></span><span class="idiff"> </span><span class="s1" style="color: #d14;"><span class="idiff right">'s/\s*(\d+)\s(.+)/$1\t$2/</span>'</span></span></pre>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="shell"><span class="nb" style="color: #0086b3;"><span class="idiff left">awk</span></span><span class="idiff"> </span><span class="s1" style="color: #d14;"><span class="idiff right">'{ n=$1; sub(/[ \t]*[0-9]+[ \t]/, ""); print n "\t" $0 }</span>'</span></span></pre>
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<a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/compare/36914b997fe7b6f71dbe208a0f2e29e2ca47f056...3ff79da3f1d0d11d2976f414edfd56adcf372b89#8f39bf8ecc07c02566ff31855c6b4c2b4e9d23ae"><strong>sort-uniq-count-rank</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -10,5 +10,5 @@ then</td>
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10
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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11
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="shell"><span class="nb" style="color: #0086b3;">sort</span> <span class="s2" style="color: #d14;">"-</span><span class="nv" style="color: #008080;">$flags</span><span class="s2" style="color: #d14;">"</span> |</span>
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12
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="shell"><span class="nb" style="color: #0086b3;">uniq</span> <span class="nt" style="color: #000080;">-i</span> <span class="nt" style="color: #000080;">-c</span> |</span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="shell"><span class="idiff left">perl </span><span class="nt" style="color: #000080;"><span class="idiff">-pe</span></span><span class="idiff"> </span><span class="s1" style="color: #d14;"><span class="idiff right">'s/\s*(\d+)\s(.+)/$1\t$2/</span>'</span> |</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="shell"><span class="nb" style="color: #0086b3;"><span class="idiff left">awk</span></span><span class="idiff"> </span><span class="s1" style="color: #d14;"><span class="idiff right">'{ n=$1; sub(/[ \t]*[0-9]+[ \t]/, ""); print n "\t" $0 }</span>'</span> |</span>
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14
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14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="shell"><span class="nb" style="color: #0086b3;">sort</span> <span class="nt" style="color: #000080;">-t</span> <span class="s2" style="color: #d14;">"</span><span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">printf</span> <span class="s1" style="color: #d14;">'\t'</span><span class="si" style="color: #d14;">)</span><span class="s2" style="color: #d14;">"</span> <span class="nt" style="color: #000080;">-k</span> 1,1nr <span class="nt" style="color: #000080;">-k</span> <span class="s2" style="color: #d14;">"2</span><span class="nv" style="color: #008080;">$flags</span><span class="s2" style="color: #d14;">"</span></span></pre>
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<a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/compare/36914b997fe7b6f71dbe208a0f2e29e2ca47f056...3ff79da3f1d0d11d2976f414edfd56adcf372b89#96f5584f0d6dcaca2b56481ad25dbd045758ed30"><strong>xtract.go</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -331,6 +331,8 @@ Data Conversion</td>
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<pre style="margin: 0;"> <span id="LC331" class="line" lang="go"><span class="s" style="color: #d14;"> [-indent | -flush]</span></span>
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<pre style="margin: 0;"> <span id="LC332" class="line" lang="go"><span class="s" style="color: #d14;"> XML object names per column</span></span>
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<pre style="margin: 0;">+<span id="LC334" class="line" lang="go"><span class="s" style="color: #d14;"> -g2x Convert GenBank flatfile format to INSDSeq XML</span></span>
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<pre style="margin: 0;"> <span id="LC336" class="line" lang="go"><span class="s" style="color: #d14;">Documentation</span></span>
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<pre style="margin: 0;"> <span id="LC338" class="line" lang="go"><span class="s" style="color: #d14;"> -help Print this document</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6549,14 +6551,15 @@ func ProcessTokens(rdr <-chan string) {</td>
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<pre style="margin: 0;"> <span id="LC6551" class="line" lang="go"><span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC6552" class="line" lang="go"></span>
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<pre style="margin: 0;"> <span id="LC6553" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// ProcessFormat reformats XML for ease of reading</span></span>
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<pre style="margin: 0;">-<span id="LC6552" class="line" lang="go"><span class="k" style="font-weight: 600;">func</span> <span class="n" style="color: #333;">ProcessFormat</span><span class="p">(</span><span class="n" style="color: #333;">rdr</span> <span class="o" style="font-weight: 600;"><-</span><span class="k" style="font-weight: 600;">chan</span> <span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">,</span> <span class="n" style="color: #333;">args</span> <span class="p">[]</span><span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p"><span class="idiff left right">)</span></span> <span class="p">{</span></span>
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6554
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<pre style="margin: 0;">+<span id="LC6554" class="line" lang="go"><span class="k" style="font-weight: 600;">func</span> <span class="n" style="color: #333;">ProcessFormat</span><span class="p">(</span><span class="n" style="color: #333;">rdr</span> <span class="o" style="font-weight: 600;"><-</span><span class="k" style="font-weight: 600;">chan</span> <span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">,</span> <span class="n" style="color: #333;">args</span> <span class="p">[]</span><span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p"><span class="idiff left">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">useTimer</span></span><span class="idiff"> </span><span class="kt" style="color: #458; font-weight: 600;"><span class="idiff">bool</span></span><span class="p"><span class="idiff">)</span></span><span class="idiff"> </span><span class="kt" style="color: #458; font-weight: 600;"><span class="idiff right">int</span></span> <span class="p">{</span></span>
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6555
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<pre style="margin: 0;"> <span id="LC6555" class="line" lang="go"></span>
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6556
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<pre style="margin: 0;"> <span id="LC6556" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">rdr</span> <span class="o" style="font-weight: 600;">==</span> <span class="no" style="color: #008080;">nil</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">args</span> <span class="o" style="font-weight: 600;">==</span> <span class="no" style="color: #008080;">nil</span> <span class="p">{</span></span>
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6555
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<pre style="margin: 0;">-<span id="LC6555" class="line" lang="go"> <span class="k" style="font-weight: 600;">return</span></span>
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6557
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<pre style="margin: 0;">+<span id="LC6557" class="line" lang="go"> <span class="k" style="font-weight: 600;">return</span><span class="idiff left"> </span><span class="m" style="color: #099;"><span class="idiff right">0</span></span></span>
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6556
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6558
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<pre style="margin: 0;"> <span id="LC6558" class="line" lang="go"> <span class="p">}</span></span>
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6557
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6559
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<pre style="margin: 0;"> <span id="LC6559" class="line" lang="go"></span>
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6558
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6560
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<pre style="margin: 0;"> <span id="LC6560" class="line" lang="go"> <span class="k" style="font-weight: 600;">var</span> <span class="n" style="color: #333;">buffer</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Builder</span></span>
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6559
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6561
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<pre style="margin: 0;"> <span id="LC6561" class="line" lang="go"> <span class="n" style="color: #333;">count</span> <span class="o" style="font-weight: 600;">:=</span> <span class="m" style="color: #099;">0</span></span>
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6562
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<pre style="margin: 0;">+<span id="LC6562" class="line" lang="go"> <span class="n" style="color: #333;">maxLine</span> <span class="o" style="font-weight: 600;">:=</span> <span class="m" style="color: #099;">0</span></span>
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6560
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6563
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<pre style="margin: 0;"> <span id="LC6563" class="line" lang="go"></span>
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6561
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6564
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<pre style="margin: 0;"> <span id="LC6564" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// skip past command name</span></span>
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6562
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6565
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<pre style="margin: 0;"> <span id="LC6565" class="line" lang="go"> <span class="n" style="color: #333;">args</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">args</span><span class="p">[</span><span class="m" style="color: #099;">1</span><span class="o" style="font-weight: 600;">:</span><span class="p">]</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="6613" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="6616" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6613,7 +6616,7 @@ func ProcessFormat(rdr <-chan string, args []string) {</td>
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6613
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6616
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<pre style="margin: 0;"> <span id="LC6616" class="line" lang="go"> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stdout</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">)</span></span>
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6614
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6617
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<pre style="margin: 0;"> <span id="LC6617" class="line" lang="go"> <span class="p">}</span></span>
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6615
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6618
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<pre style="margin: 0;"> <span id="LC6618" class="line" lang="go"> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stdout</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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6616
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<pre style="margin: 0;">-<span id="LC6616" class="line" lang="go"> <span class="k" style="font-weight: 600;">return</span></span>
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6619
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<pre style="margin: 0;">+<span id="LC6619" class="line" lang="go"> <span class="k" style="font-weight: 600;">return</span><span class="idiff left"> </span><span class="m" style="color: #099;"><span class="idiff right">0</span></span></span>
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6617
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6620
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<pre style="margin: 0;"> <span id="LC6620" class="line" lang="go"> <span class="p">}</span></span>
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6618
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6621
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<pre style="margin: 0;"> <span id="LC6621" class="line" lang="go"></span>
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6622
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<pre style="margin: 0;"> <span id="LC6622" class="line" lang="go"> <span class="n" style="color: #333;">unicodePolicy</span> <span class="o" style="font-weight: 600;">:=</span> <span class="s" style="color: #d14;">""</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="6714" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="6717" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6714,7 +6717,7 @@ func ProcessFormat(rdr <-chan string, args []string) {</td>
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6714
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6717
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<pre style="margin: 0;"> <span id="LC6717" class="line" lang="go"> <span class="n" style="color: #333;">DoMathML</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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6715
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6718
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<pre style="margin: 0;"> <span id="LC6718" class="line" lang="go"> <span class="p">}</span></span>
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6716
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6719
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<pre style="margin: 0;"> <span id="LC6719" class="line" lang="go"></span>
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6717
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<pre style="margin: 0;">-<span id="LC6717" class="line" lang="go"> <span class="n" style="color: #333;">CountLines</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">DoMixed</span></span>
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6720
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<pre style="margin: 0;">+<span id="LC6720" class="line" lang="go"> <span class="n" style="color: #333;">CountLines</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">DoMixed</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">||</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">useTimer</span></span></span>
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6718
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6721
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<pre style="margin: 0;"> <span id="LC6721" class="line" lang="go"> <span class="n" style="color: #333;">AllowEmbed</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">DoStrict</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">DoMixed</span></span>
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6719
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6722
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<pre style="margin: 0;"> <span id="LC6722" class="line" lang="go"> <span class="n" style="color: #333;">ContentMods</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">AllowEmbed</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">DoCompress</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">DoUnicode</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">DoScript</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">DoMathML</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">DeAccent</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">DoASCII</span></span>
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<pre style="margin: 0;"> <span id="LC6723" class="line" lang="go"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="7117" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="7120" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7117,6 +7120,8 @@ func ProcessFormat(rdr <-chan string, args []string) {</td>
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7117
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7120
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<pre style="margin: 0;"> <span id="LC7120" class="line" lang="go"> <span class="k" style="font-weight: 600;">return</span></span>
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7118
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<td class="diff-line-num new_line" data-linenumber="7121" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7121
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<pre style="margin: 0;"> <span id="LC7121" class="line" lang="go"> <span class="p">}</span></span>
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7119
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<td class="diff-line-num new_line" data-linenumber="7122" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7122
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<pre style="margin: 0;"> <span id="LC7122" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="7123" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7123
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<pre style="margin: 0;">+<span id="LC7123" class="line" lang="go"> <span class="n" style="color: #333;">maxLine</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tkn</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Line</span></span>
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7124
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<pre style="margin: 0;">+<span id="LC7124" class="line" lang="go"></span>
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7120
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<td class="diff-line-num new_line" data-linenumber="7125" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7125
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<pre style="margin: 0;"> <span id="LC7125" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">tkn</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Tag</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">DOCTYPETAG</span> <span class="p">{</span></span>
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7121
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<td class="diff-line-num new_line" data-linenumber="7126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7126
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<pre style="margin: 0;"> <span id="LC7126" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">skipDoctype</span> <span class="p">{</span></span>
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7122
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<td class="diff-line-num new_line" data-linenumber="7127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7127
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<pre style="margin: 0;"> <span id="LC7127" class="line" lang="go"> <span class="k" style="font-weight: 600;">return</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="7146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="7151" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7146,6 +7151,8 @@ func ProcessFormat(rdr <-chan string, args []string) {</td>
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7146
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<td class="diff-line-num new_line" data-linenumber="7151" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7151
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<pre style="margin: 0;"> <span id="LC7151" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stdout</span><span class="p">,</span> <span class="s" style="color: #d14;">"%s"</span><span class="p">,</span> <span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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7147
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7152
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<pre style="margin: 0;"> <span id="LC7152" class="line" lang="go"> <span class="p">}</span></span>
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7148
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<td class="diff-line-num new_line" data-linenumber="7153" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7153
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<pre style="margin: 0;"> <span id="LC7153" class="line" lang="go"> <span class="p">}</span></span>
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7154
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<pre style="margin: 0;">+<span id="LC7154" class="line" lang="go"></span>
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7155
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<pre style="margin: 0;">+<span id="LC7155" class="line" lang="go"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">maxLine</span></span>
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7149
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7156
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<pre style="margin: 0;"> <span id="LC7156" class="line" lang="go"><span class="p">}</span></span>
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7150
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7157
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<pre style="margin: 0;"> <span id="LC7157" class="line" lang="go"></span>
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7151
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<td class="diff-line-num new_line" data-linenumber="7158" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7158
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<pre style="margin: 0;"> <span id="LC7158" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// ProcessOutline displays outline of XML structure</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="7339" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="7346" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7339,12 +7346,14 @@ func ProcessSynopsis(rdr <-chan string, leaf bool, delim string) {</td>
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7339
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7346
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<pre style="margin: 0;"> <span id="LC7346" class="line" lang="go"><span class="p">}</span></span>
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7340
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7347
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<pre style="margin: 0;"> <span id="LC7347" class="line" lang="go"></span>
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7341
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7348
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<pre style="margin: 0;"> <span id="LC7348" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// ProcessVerify checks for well-formed XML</span></span>
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7342
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<pre style="margin: 0;">-<span id="LC7342" class="line" lang="go"><span class="k" style="font-weight: 600;">func</span> <span class="n" style="color: #333;">ProcessVerify</span><span class="p">(</span><span class="n" style="color: #333;">rdr</span> <span class="o" style="font-weight: 600;"><-</span><span class="k" style="font-weight: 600;">chan</span> <span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">,</span> <span class="n" style="color: #333;">args</span> <span class="p">[]</span><span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">)</span> <span class="p">{</span></span>
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7349
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<pre style="margin: 0;">+<span id="LC7349" class="line" lang="go"><span class="k" style="font-weight: 600;">func</span> <span class="n" style="color: #333;">ProcessVerify</span><span class="p">(</span><span class="n" style="color: #333;">rdr</span> <span class="o" style="font-weight: 600;"><-</span><span class="k" style="font-weight: 600;">chan</span> <span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">,</span> <span class="n" style="color: #333;">args</span> <span class="p">[]</span><span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">)</span> <span class="kt" style="color: #458; font-weight: 600;"><span class="idiff left">int</span></span><span class="idiff right"> </span><span class="p">{</span></span>
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7343
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7350
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<pre style="margin: 0;"> <span id="LC7350" class="line" lang="go"></span>
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7344
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<td class="diff-line-num new_line" data-linenumber="7351" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7351
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<pre style="margin: 0;"> <span id="LC7351" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">rdr</span> <span class="o" style="font-weight: 600;">==</span> <span class="no" style="color: #008080;">nil</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">args</span> <span class="o" style="font-weight: 600;">==</span> <span class="no" style="color: #008080;">nil</span> <span class="p">{</span></span>
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7345
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<pre style="margin: 0;">-<span id="LC7345" class="line" lang="go"> <span class="k" style="font-weight: 600;">return</span></span>
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7352
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<pre style="margin: 0;">+<span id="LC7352" class="line" lang="go"> <span class="k" style="font-weight: 600;">return</span><span class="idiff left"> </span><span class="m" style="color: #099;"><span class="idiff right">0</span></span></span>
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7346
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7353
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<pre style="margin: 0;"> <span id="LC7353" class="line" lang="go"> <span class="p">}</span></span>
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7347
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7354
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<pre style="margin: 0;"> <span id="LC7354" class="line" lang="go"></span>
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7355
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<pre style="margin: 0;">+<span id="LC7355" class="line" lang="go"> <span class="n" style="color: #333;">CountLines</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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7356
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<pre style="margin: 0;">+<span id="LC7356" class="line" lang="go"></span>
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7348
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7357
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<pre style="margin: 0;"> <span id="LC7357" class="line" lang="go"> <span class="n" style="color: #333;">tknq</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">CreateTokenizer</span><span class="p">(</span><span class="n" style="color: #333;">rdr</span><span class="p">)</span></span>
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7349
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7358
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<pre style="margin: 0;"> <span id="LC7358" class="line" lang="go"></span>
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7350
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7359
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<pre style="margin: 0;"> <span id="LC7359" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">tknq</span> <span class="o" style="font-weight: 600;">==</span> <span class="no" style="color: #008080;">nil</span> <span class="p">{</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="7374" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="7383" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7374,6 +7383,7 @@ func ProcessVerify(rdr <-chan string, args []string) {</td>
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7374
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7383
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<pre style="margin: 0;"> <span id="LC7383" class="line" lang="go"> <span class="n" style="color: #333;">maxDepth</span> <span class="o" style="font-weight: 600;">:=</span> <span class="m" style="color: #099;">0</span></span>
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7375
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7384
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<pre style="margin: 0;"> <span id="LC7384" class="line" lang="go"> <span class="n" style="color: #333;">depthLine</span> <span class="o" style="font-weight: 600;">:=</span> <span class="m" style="color: #099;">0</span></span>
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7376
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<td class="diff-line-num new_line" data-linenumber="7385" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7385
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<pre style="margin: 0;"> <span id="LC7385" class="line" lang="go"> <span class="n" style="color: #333;">depthID</span> <span class="o" style="font-weight: 600;">:=</span> <span class="s" style="color: #d14;">""</span></span>
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7386
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<pre style="margin: 0;">+<span id="LC7386" class="line" lang="go"> <span class="n" style="color: #333;">maxLine</span> <span class="o" style="font-weight: 600;">:=</span> <span class="m" style="color: #099;">0</span></span>
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7377
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7387
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<pre style="margin: 0;"> <span id="LC7387" class="line" lang="go"></span>
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7378
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7388
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<pre style="margin: 0;"> <span id="LC7388" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// warn if HTML tags are not well-formed</span></span>
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7379
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<td class="diff-line-num new_line" data-linenumber="7389" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7389
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<pre style="margin: 0;"> <span id="LC7389" class="line" lang="go"> <span class="n" style="color: #333;">unbalancedHTML</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">func</span><span class="p">(</span><span class="n" style="color: #333;">text</span> <span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">)</span> <span class="kt" style="color: #458; font-weight: 600;">bool</span> <span class="p">{</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="7497" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="7507" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7497,6 +7507,7 @@ func ProcessVerify(rdr <-chan string, args []string) {</td>
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7497
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7507
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<pre style="margin: 0;"> <span id="LC7507" class="line" lang="go"> <span class="n" style="color: #333;">tag</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">tkn</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Tag</span></span>
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7498
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7508
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<pre style="margin: 0;"> <span id="LC7508" class="line" lang="go"> <span class="n" style="color: #333;">name</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">tkn</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Name</span></span>
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7499
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7509
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<pre style="margin: 0;"> <span id="LC7509" class="line" lang="go"> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">tkn</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Line</span></span>
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7510
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<pre style="margin: 0;">+<span id="LC7510" class="line" lang="go"> <span class="n" style="color: #333;">maxLine</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">line</span></span>
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7500
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<td class="diff-line-num new_line" data-linenumber="7511" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7511
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<pre style="margin: 0;"> <span id="LC7511" class="line" lang="go"></span>
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7501
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7512
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<pre style="margin: 0;"> <span id="LC7512" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">level</span> <span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">maxDepth</span> <span class="p">{</span></span>
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7502
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<td class="diff-line-num new_line" data-linenumber="7513" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7513
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<pre style="margin: 0;"> <span id="LC7513" class="line" lang="go"> <span class="n" style="color: #333;">maxDepth</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">level</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="7575" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7564,6 +7575,8 @@ func ProcessVerify(rdr <-chan string, args []string) {</td>
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7564
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7575
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<pre style="margin: 0;"> <span id="LC7575" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">maxDepth</span> <span class="o" style="font-weight: 600;">></span> <span class="m" style="color: #099;">20</span> <span class="p">{</span></span>
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7565
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<td class="diff-line-num new_line" data-linenumber="7576" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7576
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<pre style="margin: 0;"> <span id="LC7576" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stdout</span><span class="p">,</span> <span class="s" style="color: #d14;">"%s%8d</span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">Maximum nesting, %d levels</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span> <span class="n" style="color: #333;">depthID</span><span class="p">,</span> <span class="n" style="color: #333;">depthLine</span><span class="p">,</span> <span class="n" style="color: #333;">maxDepth</span><span class="p">)</span></span>
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7566
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7577
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<pre style="margin: 0;"> <span id="LC7577" class="line" lang="go"> <span class="p">}</span></span>
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7578
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<pre style="margin: 0;">+<span id="LC7578" class="line" lang="go"></span>
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7579
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<pre style="margin: 0;">+<span id="LC7579" class="line" lang="go"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">maxLine</span></span>
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7567
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7580
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<pre style="margin: 0;"> <span id="LC7580" class="line" lang="go"><span class="p">}</span></span>
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7568
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7581
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<pre style="margin: 0;"> <span id="LC7581" class="line" lang="go"></span>
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7569
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7582
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<pre style="margin: 0;"> <span id="LC7582" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// ProcessFilter modifies XML content, comments, or CDATA</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="8667" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8667,6 +8680,805 @@ func TableConverter(inp io.Reader, args []string) int {</td>
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8667
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8680
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<pre style="margin: 0;"> <span id="LC8680" class="line" lang="go"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">recordCount</span></span>
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8668
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8681
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<pre style="margin: 0;"> <span id="LC8681" class="line" lang="go"><span class="p">}</span></span>
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8669
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8682
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<pre style="margin: 0;"> <span id="LC8682" class="line" lang="go"></span>
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8683
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<pre style="margin: 0;">+<span id="LC8683" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// READ GENBANK FLATFILE AND TRANSLATE TO INSDSEQ XML</span></span>
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8684
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<pre style="margin: 0;">+<span id="LC8684" class="line" lang="go"></span>
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8685
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<pre style="margin: 0;">+<span id="LC8685" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// GenBankConverter sends INSDSeq XML records down a channel</span></span>
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8686
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<pre style="margin: 0;">+<span id="LC8686" class="line" lang="go"><span class="k" style="font-weight: 600;">func</span> <span class="n" style="color: #333;">GenBankConverter</span><span class="p">(</span><span class="n" style="color: #333;">inp</span> <span class="n" style="color: #333;">io</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Reader</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><-</span><span class="k" style="font-weight: 600;">chan</span> <span class="kt" style="color: #458; font-weight: 600;">string</span> <span class="p">{</span></span>
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8687
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<pre style="margin: 0;">+<span id="LC8687" class="line" lang="go"></span>
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8688
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<pre style="margin: 0;">+<span id="LC8688" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">inp</span> <span class="o" style="font-weight: 600;">==</span> <span class="no" style="color: #008080;">nil</span> <span class="p">{</span></span>
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8689
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<pre style="margin: 0;">+<span id="LC8689" class="line" lang="go"> <span class="k" style="font-weight: 600;">return</span> <span class="no" style="color: #008080;">nil</span></span>
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8690
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<pre style="margin: 0;">+<span id="LC8690" class="line" lang="go"> <span class="p">}</span></span>
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8691
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<pre style="margin: 0;">+<span id="LC8691" class="line" lang="go"></span>
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8692
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<pre style="margin: 0;">+<span id="LC8692" class="line" lang="go"> <span class="n" style="color: #333;">out</span> <span class="o" style="font-weight: 600;">:=</span> <span class="nb" style="color: #0086b3;">make</span><span class="p">(</span><span class="k" style="font-weight: 600;">chan</span> <span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">,</span> <span class="n" style="color: #333;">ChanDepth</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8693" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8693
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<pre style="margin: 0;">+<span id="LC8693" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">out</span> <span class="o" style="font-weight: 600;">==</span> <span class="no" style="color: #008080;">nil</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8694" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8694
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<pre style="margin: 0;">+<span id="LC8694" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">"Unable to create GenBank converter channel</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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8695
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<pre style="margin: 0;">+<span id="LC8695" class="line" lang="go"> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Exit</span><span class="p">(</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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8696
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<pre style="margin: 0;">+<span id="LC8696" class="line" lang="go"> <span class="p">}</span></span>
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8697
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<pre style="margin: 0;">+<span id="LC8697" class="line" lang="go"></span>
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8698
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<pre style="margin: 0;">+<span id="LC8698" class="line" lang="go"> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">twelvespaces</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">" "</span></span>
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8699
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<pre style="margin: 0;">+<span id="LC8699" class="line" lang="go"> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">twentyonespaces</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">" "</span></span>
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8700
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<pre style="margin: 0;">+<span id="LC8700" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="8701" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8701
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<pre style="margin: 0;">+<span id="LC8701" class="line" lang="go"> <span class="k" style="font-weight: 600;">var</span> <span class="n" style="color: #333;">rec</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Builder</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8702" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8702
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<pre style="margin: 0;">+<span id="LC8702" class="line" lang="go"> <span class="k" style="font-weight: 600;">var</span> <span class="n" style="color: #333;">con</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Builder</span></span>
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8703
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<pre style="margin: 0;">+<span id="LC8703" class="line" lang="go"> <span class="k" style="font-weight: 600;">var</span> <span class="n" style="color: #333;">seq</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Builder</span></span>
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8704
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<pre style="margin: 0;">+<span id="LC8704" class="line" lang="go"></span>
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8705
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<pre style="margin: 0;">+<span id="LC8705" class="line" lang="go"> <span class="n" style="color: #333;">scanr</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">bufio</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">NewScanner</span><span class="p">(</span><span class="n" style="color: #333;">inp</span><span class="p">)</span></span>
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8706
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<pre style="margin: 0;">+<span id="LC8706" class="line" lang="go"></span>
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8707
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<pre style="margin: 0;">+<span id="LC8707" class="line" lang="go"> <span class="n" style="color: #333;">convertGenBank</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">func</span><span class="p">(</span><span class="n" style="color: #333;">inp</span> <span class="n" style="color: #333;">io</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Reader</span><span class="p">,</span> <span class="n" style="color: #333;">out</span> <span class="k" style="font-weight: 600;">chan</span><span class="o" style="font-weight: 600;"><-</span> <span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">)</span> <span class="p">{</span></span>
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8708
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<pre style="margin: 0;">+<span id="LC8708" class="line" lang="go"></span>
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8709
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<pre style="margin: 0;">+<span id="LC8709" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// close channel when all records have been sent</span></span>
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8710
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<pre style="margin: 0;">+<span id="LC8710" class="line" lang="go"> <span class="k" style="font-weight: 600;">defer</span> <span class="nb" style="color: #0086b3;">close</span><span class="p">(</span><span class="n" style="color: #333;">out</span><span class="p">)</span></span>
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8711
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<pre style="margin: 0;">+<span id="LC8711" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="8712" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8712
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<pre style="margin: 0;">+<span id="LC8712" class="line" lang="go"> <span class="n" style="color: #333;">row</span> <span class="o" style="font-weight: 600;">:=</span> <span class="m" style="color: #099;">0</span></span>
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8713
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<pre style="margin: 0;">+<span id="LC8713" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="8714" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8714
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<pre style="margin: 0;">+<span id="LC8714" class="line" lang="go"> <span class="n" style="color: #333;">nextLine</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">func</span><span class="p">()</span> <span class="kt" style="color: #458; font-weight: 600;">string</span> <span class="p">{</span></span>
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8715
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<pre style="margin: 0;">+<span id="LC8715" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="8716" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8716
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<pre style="margin: 0;">+<span id="LC8716" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">scanr</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Scan</span><span class="p">()</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8717" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8717
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<pre style="margin: 0;">+<span id="LC8717" class="line" lang="go"> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">scanr</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Text</span><span class="p">()</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8718" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8718
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<pre style="margin: 0;">+<span id="LC8718" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">""</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8719" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8719
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<pre style="margin: 0;">+<span id="LC8719" class="line" lang="go"> <span class="k" style="font-weight: 600;">continue</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8720" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8720
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<pre style="margin: 0;">+<span id="LC8720" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8721" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8721
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<pre style="margin: 0;">+<span id="LC8721" class="line" lang="go"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">line</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8722" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8722
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<pre style="margin: 0;">+<span id="LC8722" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8723" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8723
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<pre style="margin: 0;">+<span id="LC8723" class="line" lang="go"> <span class="k" style="font-weight: 600;">return</span> <span class="s" style="color: #d14;">""</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8724" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8724
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<pre style="margin: 0;">+<span id="LC8724" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="8725" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8725
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<pre style="margin: 0;">+<span id="LC8725" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8726" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8726
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<pre style="margin: 0;">+<span id="LC8726" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="8727" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8727
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<pre style="margin: 0;">+<span id="LC8727" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8728" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8728
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<pre style="margin: 0;">+<span id="LC8728" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="8729" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8729
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<pre style="margin: 0;">+<span id="LC8729" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Reset</span><span class="p">()</span></span>
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8730
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<pre style="margin: 0;">+<span id="LC8730" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="8731" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8731
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<pre style="margin: 0;">+<span id="LC8731" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// read first line of next record</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8732" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8732
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<pre style="margin: 0;">+<span id="LC8732" class="line" lang="go"> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">nextLine</span><span class="p">()</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8733" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8733
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<pre style="margin: 0;">+<span id="LC8733" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">""</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8734" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8734
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<pre style="margin: 0;">+<span id="LC8734" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8735" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8735
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<pre style="margin: 0;">+<span id="LC8735" class="line" lang="go"> <span class="p">}</span></span>
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8736
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<pre style="margin: 0;">+<span id="LC8736" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="8737" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8737
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<pre style="margin: 0;">+<span id="LC8737" class="line" lang="go"> <span class="n" style="color: #333;">row</span><span class="o" style="font-weight: 600;">++</span></span>
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8738
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<pre style="margin: 0;">+<span id="LC8738" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="8739" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8739
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<pre style="margin: 0;">+<span id="LC8739" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8740" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8740
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<pre style="margin: 0;">+<span id="LC8740" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"LOCUS"</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8741" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8741
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<pre style="margin: 0;">+<span id="LC8741" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// skip release file header information</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8742" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8742
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<pre style="margin: 0;">+<span id="LC8742" class="line" lang="go"> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">nextLine</span><span class="p">()</span></span>
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8743
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<pre style="margin: 0;">+<span id="LC8743" class="line" lang="go"> <span class="n" style="color: #333;">row</span><span class="o" style="font-weight: 600;">++</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8744" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8744
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<pre style="margin: 0;">+<span id="LC8744" class="line" lang="go"> <span class="k" style="font-weight: 600;">continue</span></span>
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8745
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<pre style="margin: 0;">+<span id="LC8745" class="line" lang="go"> <span class="p">}</span></span>
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8746
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<pre style="margin: 0;">+<span id="LC8746" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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8747
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<pre style="margin: 0;">+<span id="LC8747" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8748" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8748
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<pre style="margin: 0;">+<span id="LC8748" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="8749" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8749
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<pre style="margin: 0;">+<span id="LC8749" class="line" lang="go"> <span class="n" style="color: #333;">readContinuationLines</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">func</span><span class="p">(</span><span class="n" style="color: #333;">str</span> <span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">)</span> <span class="kt" style="color: #458; font-weight: 600;">string</span> <span class="p">{</span></span>
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8750
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<pre style="margin: 0;">+<span id="LC8750" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="8751" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8751
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<pre style="margin: 0;">+<span id="LC8751" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8752" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8752
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<pre style="margin: 0;">+<span id="LC8752" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// read next line</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8753" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8753
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<pre style="margin: 0;">+<span id="LC8753" class="line" lang="go"> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">nextLine</span><span class="p">()</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8754" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8754
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<pre style="margin: 0;">+<span id="LC8754" class="line" lang="go"> <span class="n" style="color: #333;">row</span><span class="o" style="font-weight: 600;">++</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8755" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8755
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<pre style="margin: 0;">+<span id="LC8755" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="n" style="color: #333;">twelvespaces</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8756" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8756
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<pre style="margin: 0;">+<span id="LC8756" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// if not continuation line, break out of loop</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8757" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8757
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<pre style="margin: 0;">+<span id="LC8757" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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8758
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<pre style="margin: 0;">+<span id="LC8758" class="line" lang="go"> <span class="p">}</span></span>
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8759
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<pre style="margin: 0;">+<span id="LC8759" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// append subsequent line and continue with loop</span></span>
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8760
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<pre style="margin: 0;">+<span id="LC8760" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="n" style="color: #333;">twelvespaces</span><span class="p">)</span></span>
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8761
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<pre style="margin: 0;">+<span id="LC8761" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">+=</span> <span class="s" style="color: #d14;">" "</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">txt</span></span>
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8762
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<pre style="margin: 0;">+<span id="LC8762" class="line" lang="go"> <span class="p">}</span></span>
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8763
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<pre style="margin: 0;">+<span id="LC8763" class="line" lang="go"></span>
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8764
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<pre style="margin: 0;">+<span id="LC8764" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">CompressRunsOfSpaces</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">)</span></span>
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8765
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<pre style="margin: 0;">+<span id="LC8765" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">)</span></span>
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8766
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<pre style="margin: 0;">+<span id="LC8766" class="line" lang="go"></span>
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8767
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<pre style="margin: 0;">+<span id="LC8767" class="line" lang="go"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">str</span></span>
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8768
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<pre style="margin: 0;">+<span id="LC8768" class="line" lang="go"> <span class="p">}</span></span>
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8769
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<pre style="margin: 0;">+<span id="LC8769" class="line" lang="go"></span>
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8770
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<pre style="margin: 0;">+<span id="LC8770" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">func</span><span class="p">(</span><span class="n" style="color: #333;">spaces</span><span class="p">,</span> <span class="n" style="color: #333;">tag</span><span class="p">,</span> <span class="n" style="color: #333;">value</span> <span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">)</span> <span class="p">{</span></span>
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8771
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<pre style="margin: 0;">+<span id="LC8771" class="line" lang="go"></span>
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8772
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<pre style="margin: 0;">+<span id="LC8772" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="n" style="color: #333;">spaces</span><span class="p">)</span></span>
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8773
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<pre style="margin: 0;">+<span id="LC8773" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">"<"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8774" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8774
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<pre style="margin: 0;">+<span id="LC8774" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="n" style="color: #333;">tag</span><span class="p">)</span></span>
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8775
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<pre style="margin: 0;">+<span id="LC8775" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">">"</span><span class="p">)</span></span>
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8776
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<pre style="margin: 0;">+<span id="LC8776" class="line" lang="go"> <span class="n" style="color: #333;">value</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">html</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">EscapeString</span><span class="p">(</span><span class="n" style="color: #333;">value</span><span class="p">)</span></span>
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8777
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<pre style="margin: 0;">+<span id="LC8777" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="n" style="color: #333;">value</span><span class="p">)</span></span>
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8778
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<pre style="margin: 0;">+<span id="LC8778" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">"</"</span><span class="p">)</span></span>
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8779
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<pre style="margin: 0;">+<span id="LC8779" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="n" style="color: #333;">tag</span><span class="p">)</span></span>
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8780
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<pre style="margin: 0;">+<span id="LC8780" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">"></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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8781
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<pre style="margin: 0;">+<span id="LC8781" class="line" lang="go"> <span class="p">}</span></span>
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8782
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<pre style="margin: 0;">+<span id="LC8782" class="line" lang="go"></span>
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8783
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<pre style="margin: 0;">+<span id="LC8783" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// each section will exit with the next line ready to process</span></span>
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8784
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<pre style="margin: 0;">+<span id="LC8784" class="line" lang="go"></span>
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8785
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<pre style="margin: 0;">+<span id="LC8785" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"LOCUS"</span><span class="p">)</span> <span class="p">{</span></span>
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8786
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<pre style="margin: 0;">+<span id="LC8786" class="line" lang="go"></span>
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8787
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<pre style="margin: 0;">+<span id="LC8787" class="line" lang="go"> <span class="n" style="color: #333;">cols</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fields</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">)</span></span>
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8788
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<pre style="margin: 0;">+<span id="LC8788" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">cols</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="m" style="color: #099;">8</span> <span class="p">{</span></span>
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8789
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<pre style="margin: 0;">+<span id="LC8789" class="line" lang="go"></span>
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8790
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<pre style="margin: 0;">+<span id="LC8790" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// start of record</span></span>
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8791
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<pre style="margin: 0;">+<span id="LC8791" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDSeq></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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8792
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<pre style="margin: 0;">+<span id="LC8792" class="line" lang="go"></span>
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8793
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<pre style="margin: 0;">+<span id="LC8793" class="line" lang="go"> <span class="n" style="color: #333;">moleculetype</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">cols</span><span class="p">[</span><span class="m" style="color: #099;">4</span><span class="p">]</span></span>
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8794
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<pre style="margin: 0;">+<span id="LC8794" class="line" lang="go"> <span class="n" style="color: #333;">strandedness</span> <span class="o" style="font-weight: 600;">:=</span> <span class="s" style="color: #d14;">""</span></span>
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8795
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<pre style="margin: 0;">+<span id="LC8795" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">moleculetype</span><span class="p">,</span> <span class="s" style="color: #d14;">"ds-"</span><span class="p">)</span> <span class="p">{</span></span>
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8796
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<pre style="margin: 0;">+<span id="LC8796" class="line" lang="go"> <span class="n" style="color: #333;">moleculetype</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">moleculetype</span><span class="p">,</span> <span class="s" style="color: #d14;">"ds-"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8797" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8797
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<pre style="margin: 0;">+<span id="LC8797" class="line" lang="go"> <span class="n" style="color: #333;">strandedness</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"double"</span></span>
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8798
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<pre style="margin: 0;">+<span id="LC8798" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">moleculetype</span><span class="p">,</span> <span class="s" style="color: #d14;">"ss-"</span><span class="p">)</span> <span class="p">{</span></span>
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8799
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<pre style="margin: 0;">+<span id="LC8799" class="line" lang="go"> <span class="n" style="color: #333;">moleculetype</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">moleculetype</span><span class="p">,</span> <span class="s" style="color: #d14;">"ss-"</span><span class="p">)</span></span>
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8800
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<pre style="margin: 0;">+<span id="LC8800" class="line" lang="go"> <span class="n" style="color: #333;">strandedness</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"single"</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8801" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8801
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<pre style="margin: 0;">+<span id="LC8801" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">moleculetype</span><span class="p">,</span> <span class="s" style="color: #d14;">"ms-"</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8802" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8802
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<pre style="margin: 0;">+<span id="LC8802" class="line" lang="go"> <span class="n" style="color: #333;">moleculetype</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">moleculetype</span><span class="p">,</span> <span class="s" style="color: #d14;">"ms-"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8803" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8803
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<pre style="margin: 0;">+<span id="LC8803" class="line" lang="go"> <span class="n" style="color: #333;">strandedness</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"mixed"</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8804" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8804
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<pre style="margin: 0;">+<span id="LC8804" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasSuffix</span><span class="p">(</span><span class="n" style="color: #333;">moleculetype</span><span class="p">,</span> <span class="s" style="color: #d14;">"DNA"</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8805" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8805
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<pre style="margin: 0;">+<span id="LC8805" class="line" lang="go"> <span class="n" style="color: #333;">strandedness</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"double"</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8806" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8806
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<pre style="margin: 0;">+<span id="LC8806" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasSuffix</span><span class="p">(</span><span class="n" style="color: #333;">moleculetype</span><span class="p">,</span> <span class="s" style="color: #d14;">"RNA"</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8807" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8807
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<pre style="margin: 0;">+<span id="LC8807" class="line" lang="go"> <span class="n" style="color: #333;">strandedness</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"single"</span></span>
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8808
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<pre style="margin: 0;">+<span id="LC8808" class="line" lang="go"> <span class="p">}</span></span>
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8809
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<pre style="margin: 0;">+<span id="LC8809" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="8810" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8810
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<pre style="margin: 0;">+<span id="LC8810" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_locus"</span><span class="p">,</span> <span class="n" style="color: #333;">cols</span><span class="p">[</span><span class="m" style="color: #099;">1</span><span class="p">])</span></span>
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8811
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<pre style="margin: 0;">+<span id="LC8811" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="8812" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8812
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<pre style="margin: 0;">+<span id="LC8812" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_length"</span><span class="p">,</span> <span class="n" style="color: #333;">cols</span><span class="p">[</span><span class="m" style="color: #099;">2</span><span class="p">])</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8813" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8813
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<pre style="margin: 0;">+<span id="LC8813" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="8814" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8814
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<pre style="margin: 0;">+<span id="LC8814" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strandedness</span> <span class="o" style="font-weight: 600;">!=</span> <span class="s" style="color: #d14;">""</span> <span class="p">{</span></span>
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8815
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<pre style="margin: 0;">+<span id="LC8815" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_strandedness"</span><span class="p">,</span> <span class="n" style="color: #333;">strandedness</span><span class="p">)</span></span>
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8816
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<pre style="margin: 0;">+<span id="LC8816" class="line" lang="go"> <span class="p">}</span></span>
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8817
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<pre style="margin: 0;">+<span id="LC8817" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="8818" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8818
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<pre style="margin: 0;">+<span id="LC8818" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_moltype"</span><span class="p">,</span> <span class="n" style="color: #333;">moleculetype</span><span class="p">)</span></span>
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8819
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<pre style="margin: 0;">+<span id="LC8819" class="line" lang="go"></span>
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8820
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<pre style="margin: 0;">+<span id="LC8820" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_topology"</span><span class="p">,</span> <span class="n" style="color: #333;">cols</span><span class="p">[</span><span class="m" style="color: #099;">5</span><span class="p">])</span></span>
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8821
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<pre style="margin: 0;">+<span id="LC8821" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="8822" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8822
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<pre style="margin: 0;">+<span id="LC8822" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_division"</span><span class="p">,</span> <span class="n" style="color: #333;">cols</span><span class="p">[</span><span class="m" style="color: #099;">6</span><span class="p">])</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8823" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8823
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<pre style="margin: 0;">+<span id="LC8823" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="8824" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8824
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<pre style="margin: 0;">+<span id="LC8824" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_update-date"</span><span class="p">,</span> <span class="n" style="color: #333;">cols</span><span class="p">[</span><span class="m" style="color: #099;">7</span><span class="p">])</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8825" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8825
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<pre style="margin: 0;">+<span id="LC8825" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="8826" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8826
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<pre style="margin: 0;">+<span id="LC8826" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8827" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8827
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<pre style="margin: 0;">+<span id="LC8827" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">"ERROR: "</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">line</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8828" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8828
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<pre style="margin: 0;">+<span id="LC8828" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8829" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8829
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<pre style="margin: 0;">+<span id="LC8829" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="8830" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8830
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<pre style="margin: 0;">+<span id="LC8830" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// read next line and continue</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8831" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8831
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<pre style="margin: 0;">+<span id="LC8831" class="line" lang="go"> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">nextLine</span><span class="p">()</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8832" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8832
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<pre style="margin: 0;">+<span id="LC8832" class="line" lang="go"> <span class="n" style="color: #333;">row</span><span class="o" style="font-weight: 600;">++</span></span>
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8833
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<pre style="margin: 0;">+<span id="LC8833" class="line" lang="go"> <span class="p">}</span></span>
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8834
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<pre style="margin: 0;">+<span id="LC8834" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="8835" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8835
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<pre style="margin: 0;">+<span id="LC8835" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"DEFINITION"</span><span class="p">)</span> <span class="p">{</span></span>
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8836
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<pre style="margin: 0;">+<span id="LC8836" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="8837" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8837
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<pre style="margin: 0;">+<span id="LC8837" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"DEFINITION"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8838" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8838
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<pre style="margin: 0;">+<span id="LC8838" class="line" lang="go"> <span class="n" style="color: #333;">def</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">readContinuationLines</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8839" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8839
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<pre style="margin: 0;">+<span id="LC8839" class="line" lang="go"> <span class="n" style="color: #333;">def</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSuffix</span><span class="p">(</span><span class="n" style="color: #333;">def</span><span class="p">,</span> <span class="s" style="color: #d14;">"."</span><span class="p">)</span></span>
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8840
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<pre style="margin: 0;">+<span id="LC8840" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="8841" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8841
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<pre style="margin: 0;">+<span id="LC8841" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_definition"</span><span class="p">,</span> <span class="n" style="color: #333;">def</span><span class="p">)</span></span>
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8842
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<pre style="margin: 0;">+<span id="LC8842" class="line" lang="go"> <span class="p">}</span></span>
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8843
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<pre style="margin: 0;">+<span id="LC8843" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC8844" class="line" lang="go"> <span class="k" style="font-weight: 600;">var</span> <span class="n" style="color: #333;">secondaries</span> <span class="p">[]</span><span class="kt" style="color: #458; font-weight: 600;">string</span></span>
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8845
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<pre style="margin: 0;">+<span id="LC8845" class="line" lang="go"></span>
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8846
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<pre style="margin: 0;">+<span id="LC8846" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"ACCESSION"</span><span class="p">)</span> <span class="p">{</span></span>
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8847
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<pre style="margin: 0;">+<span id="LC8847" class="line" lang="go"></span>
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8848
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<pre style="margin: 0;">+<span id="LC8848" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"ACCESSION"</span><span class="p">)</span></span>
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8849
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<pre style="margin: 0;">+<span id="LC8849" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">readContinuationLines</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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8850
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<pre style="margin: 0;">+<span id="LC8850" class="line" lang="go"> <span class="n" style="color: #333;">accessions</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fields</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">)</span></span>
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8851
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<pre style="margin: 0;">+<span id="LC8851" class="line" lang="go"> <span class="n" style="color: #333;">ln</span> <span class="o" style="font-weight: 600;">:=</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">accessions</span><span class="p">)</span></span>
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8852
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<pre style="margin: 0;">+<span id="LC8852" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">ln</span> <span class="o" style="font-weight: 600;">></span> <span class="m" style="color: #099;">1</span> <span class="p">{</span></span>
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8853
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<pre style="margin: 0;">+<span id="LC8853" class="line" lang="go"></span>
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8854
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<pre style="margin: 0;">+<span id="LC8854" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_primary-accession"</span><span class="p">,</span> <span class="n" style="color: #333;">accessions</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">])</span></span>
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8855
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<pre style="margin: 0;">+<span id="LC8855" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="8856" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8856
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<pre style="margin: 0;">+<span id="LC8856" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// skip past primary accession, collect secondaries</span></span>
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8857
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<pre style="margin: 0;">+<span id="LC8857" class="line" lang="go"> <span class="n" style="color: #333;">secondaries</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">accessions</span><span class="p">[</span><span class="m" style="color: #099;">1</span><span class="o" style="font-weight: 600;">:</span><span class="p">]</span></span>
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8858
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<pre style="margin: 0;">+<span id="LC8858" class="line" lang="go"></span>
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8859
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<pre style="margin: 0;">+<span id="LC8859" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">ln</span> <span class="o" style="font-weight: 600;">==</span> <span class="m" style="color: #099;">1</span> <span class="p">{</span></span>
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8860
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<pre style="margin: 0;">+<span id="LC8860" class="line" lang="go"></span>
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8861
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<pre style="margin: 0;">+<span id="LC8861" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_primary-accession"</span><span class="p">,</span> <span class="n" style="color: #333;">accessions</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">])</span></span>
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8862
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<pre style="margin: 0;">+<span id="LC8862" class="line" lang="go"></span>
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8863
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<pre style="margin: 0;">+<span id="LC8863" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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8864
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<pre style="margin: 0;">+<span id="LC8864" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">"ERROR: "</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">line</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC8865" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC8866" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC8868" class="line" lang="go"> <span class="n" style="color: #333;">accnver</span> <span class="o" style="font-weight: 600;">:=</span> <span class="s" style="color: #d14;">""</span></span>
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8869
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<pre style="margin: 0;">+<span id="LC8869" class="line" lang="go"> <span class="n" style="color: #333;">gi</span> <span class="o" style="font-weight: 600;">:=</span> <span class="s" style="color: #d14;">""</span></span>
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8870
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<pre style="margin: 0;">+<span id="LC8871" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"VERSION"</span><span class="p">)</span> <span class="p">{</span></span>
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8872
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<pre style="margin: 0;">+<span id="LC8872" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC8873" class="line" lang="go"> <span class="n" style="color: #333;">cols</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fields</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">)</span></span>
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8874
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<pre style="margin: 0;">+<span id="LC8874" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">cols</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="m" style="color: #099;">2</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC8876" class="line" lang="go"> <span class="n" style="color: #333;">accnver</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">cols</span><span class="p">[</span><span class="m" style="color: #099;">1</span><span class="p">]</span></span>
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8877
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<pre style="margin: 0;">+<span id="LC8877" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_accession-version"</span><span class="p">,</span> <span class="n" style="color: #333;">accnver</span><span class="p">)</span></span>
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8878
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<pre style="margin: 0;">+<span id="LC8878" class="line" lang="go"></span>
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8879
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<pre style="margin: 0;">+<span id="LC8879" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">cols</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="m" style="color: #099;">3</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC8880" class="line" lang="go"></span>
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8881
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<pre style="margin: 0;">+<span id="LC8881" class="line" lang="go"> <span class="n" style="color: #333;">accnver</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">cols</span><span class="p">[</span><span class="m" style="color: #099;">1</span><span class="p">]</span></span>
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8882
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<pre style="margin: 0;">+<span id="LC8882" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_accession-version"</span><span class="p">,</span> <span class="n" style="color: #333;">accnver</span><span class="p">)</span></span>
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8883
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<pre style="margin: 0;">+<span id="LC8883" class="line" lang="go"></span>
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8884
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<pre style="margin: 0;">+<span id="LC8884" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// collect gi for other-seqids</span></span>
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8885
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<pre style="margin: 0;">+<span id="LC8885" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">cols</span><span class="p">[</span><span class="m" style="color: #099;">2</span><span class="p">],</span> <span class="s" style="color: #d14;">"GI:"</span><span class="p">)</span> <span class="p">{</span></span>
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8886
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<pre style="margin: 0;">+<span id="LC8886" class="line" lang="go"> <span class="n" style="color: #333;">gi</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">cols</span><span class="p">[</span><span class="m" style="color: #099;">2</span><span class="p">],</span> <span class="s" style="color: #d14;">"GI:"</span><span class="p">)</span></span>
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8887
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<pre style="margin: 0;">+<span id="LC8887" class="line" lang="go"> <span class="p">}</span></span>
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8888
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<pre style="margin: 0;">+<span id="LC8888" class="line" lang="go"></span>
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8889
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<pre style="margin: 0;">+<span id="LC8889" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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8890
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<pre style="margin: 0;">+<span id="LC8890" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">"ERROR: "</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">line</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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8891
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<pre style="margin: 0;">+<span id="LC8891" class="line" lang="go"> <span class="p">}</span></span>
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8892
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<pre style="margin: 0;">+<span id="LC8892" class="line" lang="go"></span>
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8893
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<pre style="margin: 0;">+<span id="LC8893" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// read next line and continue</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8894" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8894
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<pre style="margin: 0;">+<span id="LC8894" class="line" lang="go"> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">nextLine</span><span class="p">()</span></span>
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8895
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<pre style="margin: 0;">+<span id="LC8895" class="line" lang="go"> <span class="n" style="color: #333;">row</span><span class="o" style="font-weight: 600;">++</span></span>
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8896
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<pre style="margin: 0;">+<span id="LC8896" class="line" lang="go"></span>
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8897
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<pre style="margin: 0;">+<span id="LC8897" class="line" lang="go"> <span class="p">}</span></span>
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8898
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<pre style="margin: 0;">+<span id="LC8898" class="line" lang="go"></span>
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8899
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<pre style="margin: 0;">+<span id="LC8899" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">gi</span> <span class="o" style="font-weight: 600;">!=</span> <span class="s" style="color: #d14;">""</span> <span class="p">{</span></span>
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8900
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<pre style="margin: 0;">+<span id="LC8900" class="line" lang="go"></span>
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8901
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<pre style="margin: 0;">+<span id="LC8901" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDSeq_other-seqids></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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8902
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<pre style="margin: 0;">+<span id="LC8902" class="line" lang="go"></span>
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8903
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<pre style="margin: 0;">+<span id="LC8903" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeqid"</span><span class="p">,</span> <span class="s" style="color: #d14;">"gi|"</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">gi</span><span class="p">)</span></span>
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8904
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<pre style="margin: 0;">+<span id="LC8904" class="line" lang="go"></span>
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8905
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<pre style="margin: 0;">+<span id="LC8905" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" </INSDSeq_other-seqids></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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8906
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<pre style="margin: 0;">+<span id="LC8906" class="line" lang="go"> <span class="p">}</span></span>
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8907
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<pre style="margin: 0;">+<span id="LC8907" class="line" lang="go"></span>
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8908
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<pre style="margin: 0;">+<span id="LC8908" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">secondaries</span><span class="p">)</span> <span class="o" style="font-weight: 600;">></span> <span class="m" style="color: #099;">0</span> <span class="p">{</span></span>
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8909
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<pre style="margin: 0;">+<span id="LC8909" class="line" lang="go"></span>
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8910
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<pre style="margin: 0;">+<span id="LC8910" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDSeq_secondary-accessions></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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8911
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<pre style="margin: 0;">+<span id="LC8911" class="line" lang="go"></span>
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8912
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<pre style="margin: 0;">+<span id="LC8912" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">_</span><span class="p">,</span> <span class="n" style="color: #333;">secndry</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">secondaries</span> <span class="p">{</span></span>
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8913
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<pre style="margin: 0;">+<span id="LC8913" class="line" lang="go"></span>
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8914
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<pre style="margin: 0;">+<span id="LC8914" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSecondary-accn"</span><span class="p">,</span> <span class="n" style="color: #333;">secndry</span><span class="p">)</span></span>
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8915
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<pre style="margin: 0;">+<span id="LC8915" class="line" lang="go"> <span class="p">}</span></span>
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8916
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<pre style="margin: 0;">+<span id="LC8916" class="line" lang="go"></span>
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8917
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<pre style="margin: 0;">+<span id="LC8917" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" </INSDSeq_secondary-accessions></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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8918
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<pre style="margin: 0;">+<span id="LC8918" class="line" lang="go"> <span class="p">}</span></span>
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8919
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<pre style="margin: 0;">+<span id="LC8919" class="line" lang="go"></span>
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8920
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<pre style="margin: 0;">+<span id="LC8920" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"DBLINK"</span><span class="p">)</span> <span class="p">{</span></span>
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8921
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<pre style="margin: 0;">+<span id="LC8921" class="line" lang="go"></span>
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8922
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<pre style="margin: 0;">+<span id="LC8922" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"DBLINK"</span><span class="p">)</span></span>
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8923
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<pre style="margin: 0;">+<span id="LC8923" class="line" lang="go"> <span class="n" style="color: #333;">readContinuationLines</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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8924
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<pre style="margin: 0;">+<span id="LC8924" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// collect for database-reference</span></span>
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8925
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<pre style="margin: 0;">+<span id="LC8925" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// out <- Token{DBLINK, dbl}</span></span>
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8926
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<pre style="margin: 0;">+<span id="LC8926" class="line" lang="go"> <span class="p">}</span></span>
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8927
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<pre style="margin: 0;">+<span id="LC8927" class="line" lang="go"></span>
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8928
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<pre style="margin: 0;">+<span id="LC8928" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"KEYWORDS"</span><span class="p">)</span> <span class="p">{</span></span>
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8929
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<pre style="margin: 0;">+<span id="LC8929" class="line" lang="go"></span>
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8930
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<pre style="margin: 0;">+<span id="LC8930" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"KEYWORDS"</span><span class="p">)</span></span>
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8931
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<pre style="margin: 0;">+<span id="LC8931" class="line" lang="go"> <span class="n" style="color: #333;">key</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">readContinuationLines</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8932" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8932
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<pre style="margin: 0;">+<span id="LC8932" class="line" lang="go"> <span class="n" style="color: #333;">key</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSuffix</span><span class="p">(</span><span class="n" style="color: #333;">key</span><span class="p">,</span> <span class="s" style="color: #d14;">"."</span><span class="p">)</span></span>
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8933
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<pre style="margin: 0;">+<span id="LC8933" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="8934" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8934
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<pre style="margin: 0;">+<span id="LC8934" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">key</span> <span class="o" style="font-weight: 600;">!=</span> <span class="s" style="color: #d14;">""</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8935" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8935
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<pre style="margin: 0;">+<span id="LC8935" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDSeq_keywords></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8936" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8936
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<pre style="margin: 0;">+<span id="LC8936" class="line" lang="go"> <span class="n" style="color: #333;">kywds</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Split</span><span class="p">(</span><span class="n" style="color: #333;">key</span><span class="p">,</span> <span class="s" style="color: #d14;">";"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8937" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8937
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<pre style="margin: 0;">+<span id="LC8937" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">_</span><span class="p">,</span> <span class="n" style="color: #333;">kw</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">kywds</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8938" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8938
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<pre style="margin: 0;">+<span id="LC8938" class="line" lang="go"> <span class="n" style="color: #333;">kw</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">kw</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8939" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8939
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<pre style="margin: 0;">+<span id="LC8939" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">kw</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">""</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">kw</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"."</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8940" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8940
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<pre style="margin: 0;">+<span id="LC8940" class="line" lang="go"> <span class="k" style="font-weight: 600;">continue</span></span>
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8941
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<pre style="margin: 0;">+<span id="LC8941" class="line" lang="go"> <span class="p">}</span></span>
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8942
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<pre style="margin: 0;">+<span id="LC8942" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="8943" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8943
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<pre style="margin: 0;">+<span id="LC8943" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDKeyword"</span><span class="p">,</span> <span class="n" style="color: #333;">kw</span><span class="p">)</span></span>
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8944
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<pre style="margin: 0;">+<span id="LC8944" class="line" lang="go"> <span class="p">}</span></span>
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8945
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<pre style="margin: 0;">+<span id="LC8945" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" </INSDSeq_keywords></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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8946
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<pre style="margin: 0;">+<span id="LC8946" class="line" lang="go"> <span class="p">}</span></span>
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8947
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<pre style="margin: 0;">+<span id="LC8947" class="line" lang="go"> <span class="p">}</span></span>
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8948
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<pre style="margin: 0;">+<span id="LC8948" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="8949" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8949
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<pre style="margin: 0;">+<span id="LC8949" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"SOURCE"</span><span class="p">)</span> <span class="p">{</span></span>
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8950
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<pre style="margin: 0;">+<span id="LC8950" class="line" lang="go"></span>
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8951
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<pre style="margin: 0;">+<span id="LC8951" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"SOURCE"</span><span class="p">)</span></span>
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8952
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<pre style="margin: 0;">+<span id="LC8952" class="line" lang="go"> <span class="n" style="color: #333;">src</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">readContinuationLines</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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8953
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<pre style="margin: 0;">+<span id="LC8953" class="line" lang="go"></span>
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8954
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<pre style="margin: 0;">+<span id="LC8954" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_source"</span><span class="p">,</span> <span class="n" style="color: #333;">src</span><span class="p">)</span></span>
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8955
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<pre style="margin: 0;">+<span id="LC8955" class="line" lang="go"> <span class="p">}</span></span>
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8956
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<pre style="margin: 0;">+<span id="LC8956" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="8957" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8957
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<pre style="margin: 0;">+<span id="LC8957" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">" ORGANISM"</span><span class="p">)</span> <span class="p">{</span></span>
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8958
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<pre style="margin: 0;">+<span id="LC8958" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="8959" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8959
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<pre style="margin: 0;">+<span id="LC8959" class="line" lang="go"> <span class="n" style="color: #333;">org</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">" ORGANISM"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8960" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8960
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<pre style="margin: 0;">+<span id="LC8960" class="line" lang="go"> <span class="n" style="color: #333;">org</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">CompressRunsOfSpaces</span><span class="p">(</span><span class="n" style="color: #333;">org</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8961" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8961
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<pre style="margin: 0;">+<span id="LC8961" class="line" lang="go"> <span class="n" style="color: #333;">org</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">org</span><span class="p">)</span></span>
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8962
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<pre style="margin: 0;">+<span id="LC8962" class="line" lang="go"></span>
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8963
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<pre style="margin: 0;">+<span id="LC8963" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_organism"</span><span class="p">,</span> <span class="n" style="color: #333;">org</span><span class="p">)</span></span>
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8964
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<pre style="margin: 0;">+<span id="LC8964" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="8965" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8965
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<pre style="margin: 0;">+<span id="LC8965" class="line" lang="go"> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">nextLine</span><span class="p">()</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8966" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8966
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<pre style="margin: 0;">+<span id="LC8966" class="line" lang="go"> <span class="n" style="color: #333;">row</span><span class="o" style="font-weight: 600;">++</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8967" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8967
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<pre style="margin: 0;">+<span id="LC8967" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="n" style="color: #333;">twelvespaces</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8968" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8968
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<pre style="margin: 0;">+<span id="LC8968" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="n" style="color: #333;">twelvespaces</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8969" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8969
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<pre style="margin: 0;">+<span id="LC8969" class="line" lang="go"> <span class="n" style="color: #333;">tax</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">readContinuationLines</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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8970
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<pre style="margin: 0;">+<span id="LC8970" class="line" lang="go"> <span class="n" style="color: #333;">tax</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSuffix</span><span class="p">(</span><span class="n" style="color: #333;">tax</span><span class="p">,</span> <span class="s" style="color: #d14;">"."</span><span class="p">)</span></span>
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8971
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<pre style="margin: 0;">+<span id="LC8971" class="line" lang="go"></span>
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8972
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<pre style="margin: 0;">+<span id="LC8972" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_taxonomy"</span><span class="p">,</span> <span class="n" style="color: #333;">tax</span><span class="p">)</span></span>
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8973
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<pre style="margin: 0;">+<span id="LC8973" class="line" lang="go"> <span class="p">}</span></span>
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8974
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<pre style="margin: 0;">+<span id="LC8974" class="line" lang="go"> <span class="p">}</span></span>
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8975
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<pre style="margin: 0;">+<span id="LC8975" class="line" lang="go"></span>
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8976
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<pre style="margin: 0;">+<span id="LC8976" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDSeq_references></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8977" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8977
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<pre style="margin: 0;">+<span id="LC8977" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8978" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8978
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<pre style="margin: 0;">+<span id="LC8978" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"REFERENCE"</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8979" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8979
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<pre style="margin: 0;">+<span id="LC8979" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// exit out of reference section</span></span>
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8980
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<pre style="margin: 0;">+<span id="LC8980" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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8981
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<pre style="margin: 0;">+<span id="LC8981" class="line" lang="go"> <span class="p">}</span></span>
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8982
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<pre style="margin: 0;">+<span id="LC8982" class="line" lang="go"></span>
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8983
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<pre style="margin: 0;">+<span id="LC8983" class="line" lang="go"> <span class="n" style="color: #333;">ref</span> <span class="o" style="font-weight: 600;">:=</span> <span class="s" style="color: #d14;">"0"</span></span>
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8984
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<pre style="margin: 0;">+<span id="LC8984" class="line" lang="go"></span>
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8985
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<pre style="margin: 0;">+<span id="LC8985" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDReference></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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8986
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<pre style="margin: 0;">+<span id="LC8986" class="line" lang="go"></span>
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8987
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<pre style="margin: 0;">+<span id="LC8987" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"REFERENCE"</span><span class="p">)</span></span>
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8988
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<pre style="margin: 0;">+<span id="LC8988" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">CompressRunsOfSpaces</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">)</span></span>
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8989
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<pre style="margin: 0;">+<span id="LC8989" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">)</span></span>
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8990
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<pre style="margin: 0;">+<span id="LC8990" class="line" lang="go"> <span class="n" style="color: #333;">idx</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Index</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">"("</span><span class="p">)</span></span>
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8991
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<pre style="margin: 0;">+<span id="LC8991" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">idx</span> <span class="o" style="font-weight: 600;">></span> <span class="m" style="color: #099;">0</span> <span class="p">{</span></span>
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8992
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<pre style="margin: 0;">+<span id="LC8992" class="line" lang="go"> <span class="n" style="color: #333;">ref</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">[</span><span class="o" style="font-weight: 600;">:</span><span class="n" style="color: #333;">idx</span><span class="p">])</span></span>
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8993
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<pre style="margin: 0;">+<span id="LC8993" class="line" lang="go"></span>
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8994
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<pre style="margin: 0;">+<span id="LC8994" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDReference_reference"</span><span class="p">,</span> <span class="n" style="color: #333;">ref</span><span class="p">)</span></span>
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8995
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<pre style="margin: 0;">+<span id="LC8995" class="line" lang="go"></span>
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8996
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<pre style="margin: 0;">+<span id="LC8996" class="line" lang="go"> <span class="n" style="color: #333;">posn</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">str</span><span class="p">[</span><span class="n" style="color: #333;">idx</span><span class="o" style="font-weight: 600;">+</span><span class="m" style="color: #099;">1</span><span class="o" style="font-weight: 600;">:</span><span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8997" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8997
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<pre style="margin: 0;">+<span id="LC8997" class="line" lang="go"> <span class="n" style="color: #333;">posn</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSuffix</span><span class="p">(</span><span class="n" style="color: #333;">posn</span><span class="p">,</span> <span class="s" style="color: #d14;">")"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8998" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8998
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<pre style="margin: 0;">+<span id="LC8998" class="line" lang="go"> <span class="n" style="color: #333;">posn</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">posn</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8999" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8999
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<pre style="margin: 0;">+<span id="LC8999" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">posn</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"sites"</span> <span class="p">{</span></span>
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9000
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<pre style="margin: 0;">+<span id="LC9000" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9001" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9001
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<pre style="margin: 0;">+<span id="LC9001" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDReference_position"</span><span class="p">,</span> <span class="n" style="color: #333;">posn</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9002" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9002
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<pre style="margin: 0;">+<span id="LC9002" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9003" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9003
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<pre style="margin: 0;">+<span id="LC9003" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9004" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9004
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<pre style="margin: 0;">+<span id="LC9004" class="line" lang="go"> <span class="n" style="color: #333;">cols</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fields</span><span class="p">(</span><span class="n" style="color: #333;">posn</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9005" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9005
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<pre style="margin: 0;">+<span id="LC9005" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">cols</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="m" style="color: #099;">4</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">cols</span><span class="p">[</span><span class="m" style="color: #099;">2</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"to"</span> <span class="p">{</span></span>
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9006
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<pre style="margin: 0;">+<span id="LC9006" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9007" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9007
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<pre style="margin: 0;">+<span id="LC9007" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDReference_position"</span><span class="p">,</span> <span class="n" style="color: #333;">cols</span><span class="p">[</span><span class="m" style="color: #099;">1</span><span class="p">]</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">".."</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">cols</span><span class="p">[</span><span class="m" style="color: #099;">3</span><span class="p">])</span></span>
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9008
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<pre style="margin: 0;">+<span id="LC9008" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9009" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9009
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<pre style="margin: 0;">+<span id="LC9009" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9010" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9010
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<pre style="margin: 0;">+<span id="LC9010" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">"ERROR: "</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">line</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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9011
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<pre style="margin: 0;">+<span id="LC9011" class="line" lang="go"> <span class="p">}</span></span>
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9012
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<pre style="margin: 0;">+<span id="LC9012" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9013" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9013
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<pre style="margin: 0;">+<span id="LC9013" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9014" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9014
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<pre style="margin: 0;">+<span id="LC9014" class="line" lang="go"> <span class="n" style="color: #333;">ref</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">)</span></span>
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9015
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<pre style="margin: 0;">+<span id="LC9015" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9016" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9016
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<pre style="margin: 0;">+<span id="LC9016" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDReference_reference"</span><span class="p">,</span> <span class="n" style="color: #333;">ref</span><span class="p">)</span></span>
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9017
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<pre style="margin: 0;">+<span id="LC9017" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9018" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9018
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<pre style="margin: 0;">+<span id="LC9018" class="line" lang="go"> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">nextLine</span><span class="p">()</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9019" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9019
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<pre style="margin: 0;">+<span id="LC9019" class="line" lang="go"> <span class="n" style="color: #333;">row</span><span class="o" style="font-weight: 600;">++</span></span>
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9020
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<pre style="margin: 0;">+<span id="LC9020" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9021" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9021
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<pre style="margin: 0;">+<span id="LC9021" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">" AUTHORS"</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9022" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9022
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<pre style="margin: 0;">+<span id="LC9022" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9023" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9023
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<pre style="margin: 0;">+<span id="LC9023" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">" AUTHORS"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9024" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9024
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<pre style="margin: 0;">+<span id="LC9024" class="line" lang="go"> <span class="n" style="color: #333;">auths</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">readContinuationLines</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9025" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9025
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<pre style="margin: 0;">+<span id="LC9025" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9026" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9026
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<pre style="margin: 0;">+<span id="LC9026" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDReference_authors></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9027" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9027
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<pre style="margin: 0;">+<span id="LC9027" class="line" lang="go"> <span class="n" style="color: #333;">authors</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Split</span><span class="p">(</span><span class="n" style="color: #333;">auths</span><span class="p">,</span> <span class="s" style="color: #d14;">", "</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9028" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9028
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<pre style="margin: 0;">+<span id="LC9028" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">_</span><span class="p">,</span> <span class="n" style="color: #333;">auth</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">authors</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9029" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9029
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<pre style="margin: 0;">+<span id="LC9029" class="line" lang="go"> <span class="n" style="color: #333;">auth</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">auth</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9030" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9030
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<pre style="margin: 0;">+<span id="LC9030" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">auth</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">""</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9031" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9031
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<pre style="margin: 0;">+<span id="LC9031" class="line" lang="go"> <span class="k" style="font-weight: 600;">continue</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9032" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9032
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<pre style="margin: 0;">+<span id="LC9032" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9033" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9033
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<pre style="margin: 0;">+<span id="LC9033" class="line" lang="go"> <span class="n" style="color: #333;">pair</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Split</span><span class="p">(</span><span class="n" style="color: #333;">auth</span><span class="p">,</span> <span class="s" style="color: #d14;">" and "</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9034" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9034
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<pre style="margin: 0;">+<span id="LC9034" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">_</span><span class="p">,</span> <span class="n" style="color: #333;">name</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">pair</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9035" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9035
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<pre style="margin: 0;">+<span id="LC9035" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9036" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9036
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<pre style="margin: 0;">+<span id="LC9036" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDAuthor"</span><span class="p">,</span> <span class="n" style="color: #333;">name</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9037" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9037
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<pre style="margin: 0;">+<span id="LC9037" class="line" lang="go"> <span class="p">}</span></span>
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9038
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<pre style="margin: 0;">+<span id="LC9038" class="line" lang="go"> <span class="p">}</span></span>
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9039
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<pre style="margin: 0;">+<span id="LC9039" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" </INSDReference_authors></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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9040
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<pre style="margin: 0;">+<span id="LC9040" class="line" lang="go"> <span class="p">}</span></span>
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9041
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9042
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<pre style="margin: 0;">+<span id="LC9042" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">" CONSRTM"</span><span class="p">)</span> <span class="p">{</span></span>
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9043
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<pre style="margin: 0;">+<span id="LC9043" class="line" lang="go"></span>
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9044
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<pre style="margin: 0;">+<span id="LC9044" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">" CONSRTM"</span><span class="p">)</span></span>
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9045
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<pre style="margin: 0;">+<span id="LC9045" class="line" lang="go"> <span class="n" style="color: #333;">cons</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">readContinuationLines</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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9046
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<pre style="margin: 0;">+<span id="LC9046" class="line" lang="go"></span>
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9047
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<pre style="margin: 0;">+<span id="LC9047" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDReference_consortium"</span><span class="p">,</span> <span class="n" style="color: #333;">cons</span><span class="p">)</span></span>
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9048
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<pre style="margin: 0;">+<span id="LC9048" class="line" lang="go"> <span class="p">}</span></span>
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9049
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<pre style="margin: 0;">+<span id="LC9049" class="line" lang="go"></span>
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9050
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<pre style="margin: 0;">+<span id="LC9050" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">" TITLE"</span><span class="p">)</span> <span class="p">{</span></span>
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9051
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9052
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<pre style="margin: 0;">+<span id="LC9052" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">" TITLE"</span><span class="p">)</span></span>
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9053
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<pre style="margin: 0;">+<span id="LC9053" class="line" lang="go"> <span class="n" style="color: #333;">titl</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">readContinuationLines</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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9054
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9055
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<pre style="margin: 0;">+<span id="LC9055" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDReference_title"</span><span class="p">,</span> <span class="n" style="color: #333;">titl</span><span class="p">)</span></span>
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9056
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<pre style="margin: 0;">+<span id="LC9056" class="line" lang="go"> <span class="p">}</span></span>
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9057
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9058
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<pre style="margin: 0;">+<span id="LC9058" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">" JOURNAL"</span><span class="p">)</span> <span class="p">{</span></span>
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9059
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<pre style="margin: 0;">+<span id="LC9060" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">" JOURNAL"</span><span class="p">)</span></span>
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9061
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<pre style="margin: 0;">+<span id="LC9061" class="line" lang="go"> <span class="n" style="color: #333;">jour</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">readContinuationLines</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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9062
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<pre style="margin: 0;">+<span id="LC9062" class="line" lang="go"></span>
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9063
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<pre style="margin: 0;">+<span id="LC9063" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDReference_journal"</span><span class="p">,</span> <span class="n" style="color: #333;">jour</span><span class="p">)</span></span>
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9064
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<pre style="margin: 0;">+<span id="LC9064" class="line" lang="go"> <span class="p">}</span></span>
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9065
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<pre style="margin: 0;">+<span id="LC9065" class="line" lang="go"></span>
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9066
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<pre style="margin: 0;">+<span id="LC9066" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">" PUBMED"</span><span class="p">)</span> <span class="p">{</span></span>
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9067
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<pre style="margin: 0;">+<span id="LC9067" class="line" lang="go"></span>
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9068
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<pre style="margin: 0;">+<span id="LC9068" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">" PUBMED"</span><span class="p">)</span></span>
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9069
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<pre style="margin: 0;">+<span id="LC9069" class="line" lang="go"> <span class="n" style="color: #333;">pmid</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">readContinuationLines</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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9070
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<pre style="margin: 0;">+<span id="LC9070" class="line" lang="go"></span>
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9071
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<pre style="margin: 0;">+<span id="LC9071" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDReference_pubmed"</span><span class="p">,</span> <span class="n" style="color: #333;">pmid</span><span class="p">)</span></span>
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9072
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<pre style="margin: 0;">+<span id="LC9072" class="line" lang="go"> <span class="p">}</span></span>
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9073
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<pre style="margin: 0;">+<span id="LC9073" class="line" lang="go"></span>
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9074
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<pre style="margin: 0;">+<span id="LC9074" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">" REMARK"</span><span class="p">)</span> <span class="p">{</span></span>
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9075
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<pre style="margin: 0;">+<span id="LC9075" class="line" lang="go"></span>
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9076
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<pre style="margin: 0;">+<span id="LC9076" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">" REMARK"</span><span class="p">)</span></span>
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9077
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<pre style="margin: 0;">+<span id="LC9077" class="line" lang="go"> <span class="n" style="color: #333;">rem</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">readContinuationLines</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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9078
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<pre style="margin: 0;">+<span id="LC9078" class="line" lang="go"></span>
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9079
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<pre style="margin: 0;">+<span id="LC9079" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDReference_remark"</span><span class="p">,</span> <span class="n" style="color: #333;">rem</span><span class="p">)</span></span>
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9080
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<pre style="margin: 0;">+<span id="LC9080" class="line" lang="go"> <span class="p">}</span></span>
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9081
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<pre style="margin: 0;">+<span id="LC9081" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC9082" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// end of this reference</span></span>
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9083
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<pre style="margin: 0;">+<span id="LC9083" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" </INSDReference></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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9084
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<pre style="margin: 0;">+<span id="LC9084" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// continue to next reference</span></span>
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9085
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<pre style="margin: 0;">+<span id="LC9085" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9086" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9086
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<pre style="margin: 0;">+<span id="LC9086" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" </INSDSeq_references></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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9087
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<pre style="margin: 0;">+<span id="LC9087" class="line" lang="go"></span>
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9088
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<pre style="margin: 0;">+<span id="LC9088" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"COMMENT"</span><span class="p">)</span> <span class="p">{</span></span>
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9089
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<pre style="margin: 0;">+<span id="LC9089" class="line" lang="go"></span>
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9090
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<pre style="margin: 0;">+<span id="LC9090" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"COMMENT"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9091" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9091
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<pre style="margin: 0;">+<span id="LC9091" class="line" lang="go"> <span class="n" style="color: #333;">com</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">readContinuationLines</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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9092
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<pre style="margin: 0;">+<span id="LC9092" class="line" lang="go"></span>
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9093
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<pre style="margin: 0;">+<span id="LC9093" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_comment"</span><span class="p">,</span> <span class="n" style="color: #333;">com</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9094" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9094
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<pre style="margin: 0;">+<span id="LC9094" class="line" lang="go"> <span class="p">}</span></span>
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9095
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<pre style="margin: 0;">+<span id="LC9095" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9096" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9096
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<pre style="margin: 0;">+<span id="LC9096" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDSeq_feature-table></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9097" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9097
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<pre style="margin: 0;">+<span id="LC9097" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"FEATURES"</span><span class="p">)</span> <span class="p">{</span></span>
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9098
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<pre style="margin: 0;">+<span id="LC9098" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9099" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9099
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<pre style="margin: 0;">+<span id="LC9099" class="line" lang="go"> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">nextLine</span><span class="p">()</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9100" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9100
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<pre style="margin: 0;">+<span id="LC9100" class="line" lang="go"> <span class="n" style="color: #333;">row</span><span class="o" style="font-weight: 600;">++</span></span>
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9101
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<pre style="margin: 0;">+<span id="LC9101" class="line" lang="go"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="9102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9102
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<pre style="margin: 0;">+<span id="LC9102" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9103
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<pre style="margin: 0;">+<span id="LC9103" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">" "</span><span class="p">)</span> <span class="p">{</span></span>
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9104
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<pre style="margin: 0;">+<span id="LC9104" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// exit out of features section</span></span>
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9105
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<pre style="margin: 0;">+<span id="LC9105" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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9106
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<pre style="margin: 0;">+<span id="LC9106" class="line" lang="go"> <span class="p">}</span></span>
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9107
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<pre style="margin: 0;">+<span id="LC9107" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><</span> <span class="m" style="color: #099;">22</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9108
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<pre style="margin: 0;">+<span id="LC9108" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">"ERROR: "</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">line</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9109
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<pre style="margin: 0;">+<span id="LC9109" class="line" lang="go"> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">nextLine</span><span class="p">()</span></span>
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9110
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<pre style="margin: 0;">+<span id="LC9110" class="line" lang="go"> <span class="n" style="color: #333;">row</span><span class="o" style="font-weight: 600;">++</span></span>
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9111
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<pre style="margin: 0;">+<span id="LC9111" class="line" lang="go"> <span class="k" style="font-weight: 600;">continue</span></span>
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9112
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<pre style="margin: 0;">+<span id="LC9112" class="line" lang="go"> <span class="p">}</span></span>
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9113
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<pre style="margin: 0;">+<span id="LC9113" class="line" lang="go"></span>
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9114
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<pre style="margin: 0;">+<span id="LC9114" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDFeature></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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9115
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<pre style="margin: 0;">+<span id="LC9115" class="line" lang="go"></span>
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9116
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<pre style="margin: 0;">+<span id="LC9116" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// read feature key and start of location</span></span>
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9117
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<pre style="margin: 0;">+<span id="LC9117" class="line" lang="go"> <span class="n" style="color: #333;">fkey</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">line</span><span class="p">[</span><span class="m" style="color: #099;">5</span><span class="o" style="font-weight: 600;">:</span><span class="m" style="color: #099;">21</span><span class="p">]</span></span>
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9118
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<pre style="margin: 0;">+<span id="LC9118" class="line" lang="go"> <span class="n" style="color: #333;">fkey</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">fkey</span><span class="p">)</span></span>
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9119
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<pre style="margin: 0;">+<span id="LC9119" class="line" lang="go"></span>
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9120
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<pre style="margin: 0;">+<span id="LC9120" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDFeature_key"</span><span class="p">,</span> <span class="n" style="color: #333;">fkey</span><span class="p">)</span></span>
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9121
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<pre style="margin: 0;">+<span id="LC9121" class="line" lang="go"></span>
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9122
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<pre style="margin: 0;">+<span id="LC9122" class="line" lang="go"> <span class="n" style="color: #333;">loc</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">line</span><span class="p">[</span><span class="m" style="color: #099;">21</span><span class="o" style="font-weight: 600;">:</span><span class="p">]</span></span>
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9123
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<pre style="margin: 0;">+<span id="LC9123" class="line" lang="go"> <span class="n" style="color: #333;">loc</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">loc</span><span class="p">)</span></span>
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9124
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<pre style="margin: 0;">+<span id="LC9124" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="p">{</span></span>
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9125
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<pre style="margin: 0;">+<span id="LC9125" class="line" lang="go"> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">nextLine</span><span class="p">()</span></span>
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9126
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<pre style="margin: 0;">+<span id="LC9126" class="line" lang="go"> <span class="n" style="color: #333;">row</span><span class="o" style="font-weight: 600;">++</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9127
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<pre style="margin: 0;">+<span id="LC9127" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="n" style="color: #333;">twentyonespaces</span><span class="p">)</span> <span class="p">{</span></span>
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9128
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<pre style="margin: 0;">+<span id="LC9128" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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9129
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<pre style="margin: 0;">+<span id="LC9129" class="line" lang="go"> <span class="p">}</span></span>
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9130
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<pre style="margin: 0;">+<span id="LC9130" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="n" style="color: #333;">twentyonespaces</span><span class="p">)</span></span>
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9131
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<pre style="margin: 0;">+<span id="LC9131" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">,</span> <span class="s" style="color: #d14;">"/"</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9132" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9132
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<pre style="margin: 0;">+<span id="LC9132" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// if not continuation of location, break out of loop</span></span>
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9133
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<pre style="margin: 0;">+<span id="LC9133" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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9134
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<pre style="margin: 0;">+<span id="LC9134" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9135
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<pre style="margin: 0;">+<span id="LC9135" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// append subsequent line and continue with loop</span></span>
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9136
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<pre style="margin: 0;">+<span id="LC9136" class="line" lang="go"> <span class="n" style="color: #333;">loc</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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9137
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<pre style="margin: 0;">+<span id="LC9137" class="line" lang="go"> <span class="p">}</span></span>
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9138
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<pre style="margin: 0;">+<span id="LC9138" class="line" lang="go"></span>
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9139
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<pre style="margin: 0;">+<span id="LC9139" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDFeature_location"</span><span class="p">,</span> <span class="n" style="color: #333;">loc</span><span class="p">)</span></span>
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9140
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<pre style="margin: 0;">+<span id="LC9140" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9141
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<pre style="margin: 0;">+<span id="LC9141" class="line" lang="go"> <span class="n" style="color: #333;">location_operator</span> <span class="o" style="font-weight: 600;">:=</span> <span class="s" style="color: #d14;">""</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9142" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9142
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<pre style="margin: 0;">+<span id="LC9142" class="line" lang="go"> <span class="n" style="color: #333;">is_comp</span> <span class="o" style="font-weight: 600;">:=</span> <span class="no" style="color: #008080;">false</span></span>
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9143
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<pre style="margin: 0;">+<span id="LC9143" class="line" lang="go"> <span class="n" style="color: #333;">prime5</span> <span class="o" style="font-weight: 600;">:=</span> <span class="no" style="color: #008080;">false</span></span>
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9144
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<pre style="margin: 0;">+<span id="LC9144" class="line" lang="go"> <span class="n" style="color: #333;">prime3</span> <span class="o" style="font-weight: 600;">:=</span> <span class="no" style="color: #008080;">false</span></span>
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9145
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<pre style="margin: 0;">+<span id="LC9145" class="line" lang="go"></span>
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9146
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<pre style="margin: 0;">+<span id="LC9146" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// parseloc recursive definition</span></span>
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9147
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<pre style="margin: 0;">+<span id="LC9147" class="line" lang="go"> <span class="k" style="font-weight: 600;">var</span> <span class="n" style="color: #333;">parseloc</span> <span class="k" style="font-weight: 600;">func</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">)</span> <span class="p">[]</span><span class="kt" style="color: #458; font-weight: 600;">string</span></span>
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9148
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<pre style="margin: 0;">+<span id="LC9148" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9149
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<pre style="margin: 0;">+<span id="LC9149" class="line" lang="go"> <span class="n" style="color: #333;">parseloc</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">func</span><span class="p">(</span><span class="n" style="color: #333;">str</span> <span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">)</span> <span class="p">[]</span><span class="kt" style="color: #458; font-weight: 600;">string</span> <span class="p">{</span></span>
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9150
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<pre style="margin: 0;">+<span id="LC9150" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9151" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9151
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<pre style="margin: 0;">+<span id="LC9151" class="line" lang="go"> <span class="k" style="font-weight: 600;">var</span> <span class="n" style="color: #333;">acc</span> <span class="p">[]</span><span class="kt" style="color: #458; font-weight: 600;">string</span></span>
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9152
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<pre style="margin: 0;">+<span id="LC9152" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9153" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9153
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<pre style="margin: 0;">+<span id="LC9153" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">"join("</span><span class="p">)</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasSuffix</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">")"</span><span class="p">)</span> <span class="p">{</span></span>
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9154
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<pre style="margin: 0;">+<span id="LC9154" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9155" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9155
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<pre style="margin: 0;">+<span id="LC9155" class="line" lang="go"> <span class="n" style="color: #333;">location_operator</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"join"</span></span>
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9156
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<pre style="margin: 0;">+<span id="LC9156" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9157
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<pre style="margin: 0;">+<span id="LC9157" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">"join("</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9158" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9158
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<pre style="margin: 0;">+<span id="LC9158" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSuffix</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">")"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9159
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<pre style="margin: 0;">+<span id="LC9159" class="line" lang="go"> <span class="n" style="color: #333;">items</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Split</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">","</span><span class="p">)</span></span>
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9160
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<pre style="margin: 0;">+<span id="LC9160" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9161" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9161
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<pre style="margin: 0;">+<span id="LC9161" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">_</span><span class="p">,</span> <span class="n" style="color: #333;">thisloc</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">items</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9162
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<pre style="margin: 0;">+<span id="LC9162" class="line" lang="go"> <span class="n" style="color: #333;">inner</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">parseloc</span><span class="p">(</span><span class="n" style="color: #333;">thisloc</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9163
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<pre style="margin: 0;">+<span id="LC9163" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">_</span><span class="p">,</span> <span class="n" style="color: #333;">sub</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">inner</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9164
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<pre style="margin: 0;">+<span id="LC9164" class="line" lang="go"> <span class="n" style="color: #333;">acc</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">append</span><span class="p">(</span><span class="n" style="color: #333;">acc</span><span class="p">,</span> <span class="n" style="color: #333;">sub</span><span class="p">)</span></span>
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9165
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<pre style="margin: 0;">+<span id="LC9165" class="line" lang="go"> <span class="p">}</span></span>
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9166
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<pre style="margin: 0;">+<span id="LC9166" class="line" lang="go"> <span class="p">}</span></span>
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9167
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<pre style="margin: 0;">+<span id="LC9167" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9168" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9168
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<pre style="margin: 0;">+<span id="LC9168" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">"order("</span><span class="p">)</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasSuffix</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">")"</span><span class="p">)</span> <span class="p">{</span></span>
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9169
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<pre style="margin: 0;">+<span id="LC9169" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9170" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9170
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<pre style="margin: 0;">+<span id="LC9170" class="line" lang="go"> <span class="n" style="color: #333;">location_operator</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"order"</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9171" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9171
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<pre style="margin: 0;">+<span id="LC9171" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9172" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9172
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<pre style="margin: 0;">+<span id="LC9172" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">"order("</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9173" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9173
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<pre style="margin: 0;">+<span id="LC9173" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSuffix</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">")"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9174
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<pre style="margin: 0;">+<span id="LC9174" class="line" lang="go"> <span class="n" style="color: #333;">items</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Split</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">","</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9175
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<pre style="margin: 0;">+<span id="LC9175" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9176
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<pre style="margin: 0;">+<span id="LC9176" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">_</span><span class="p">,</span> <span class="n" style="color: #333;">thisloc</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">items</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9177
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<pre style="margin: 0;">+<span id="LC9177" class="line" lang="go"> <span class="n" style="color: #333;">inner</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">parseloc</span><span class="p">(</span><span class="n" style="color: #333;">thisloc</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9178
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<pre style="margin: 0;">+<span id="LC9178" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">_</span><span class="p">,</span> <span class="n" style="color: #333;">sub</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">inner</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9179
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<pre style="margin: 0;">+<span id="LC9179" class="line" lang="go"> <span class="n" style="color: #333;">acc</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">append</span><span class="p">(</span><span class="n" style="color: #333;">acc</span><span class="p">,</span> <span class="n" style="color: #333;">sub</span><span class="p">)</span></span>
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9180
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<pre style="margin: 0;">+<span id="LC9180" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9181" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9181
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<pre style="margin: 0;">+<span id="LC9181" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9182" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9182
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<pre style="margin: 0;">+<span id="LC9182" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9183" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9183
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<pre style="margin: 0;">+<span id="LC9183" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">"complement("</span><span class="p">)</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasSuffix</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">")"</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9184
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<pre style="margin: 0;">+<span id="LC9184" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9185" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9185
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<pre style="margin: 0;">+<span id="LC9185" class="line" lang="go"> <span class="n" style="color: #333;">is_comp</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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9186
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<pre style="margin: 0;">+<span id="LC9186" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9187
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<pre style="margin: 0;">+<span id="LC9187" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">"complement("</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9188" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9188
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<pre style="margin: 0;">+<span id="LC9188" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSuffix</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">")"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9189
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<pre style="margin: 0;">+<span id="LC9189" class="line" lang="go"> <span class="n" style="color: #333;">items</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">parseloc</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">)</span></span>
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9190
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<pre style="margin: 0;">+<span id="LC9190" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9191
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<pre style="margin: 0;">+<span id="LC9191" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// reverse items</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9192
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<pre style="margin: 0;">+<span id="LC9192" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">i</span><span class="p">,</span> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">:=</span> <span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">items</span><span class="p">)</span><span class="o" style="font-weight: 600;">-</span><span class="m" style="color: #099;">1</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">j</span><span class="p">;</span> <span class="n" style="color: #333;">i</span><span class="p">,</span> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">-</span><span class="m" style="color: #099;">1</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9193
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<pre style="margin: 0;">+<span id="LC9193" class="line" lang="go"> <span class="n" style="color: #333;">items</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">],</span> <span class="n" style="color: #333;">items</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">items</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="p">],</span> <span class="n" style="color: #333;">items</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span></span>
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9194
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<pre style="margin: 0;">+<span id="LC9194" class="line" lang="go"> <span class="p">}</span></span>
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9195
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<pre style="margin: 0;">+<span id="LC9195" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9196
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<pre style="margin: 0;">+<span id="LC9196" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// reverse from and to positions, flip direction of angle brackets (partial flags)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9197" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9197
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<pre style="margin: 0;">+<span id="LC9197" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">_</span><span class="p">,</span> <span class="n" style="color: #333;">thisloc</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">items</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9198
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<pre style="margin: 0;">+<span id="LC9198" class="line" lang="go"> <span class="n" style="color: #333;">pts</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Split</span><span class="p">(</span><span class="n" style="color: #333;">thisloc</span><span class="p">,</span> <span class="s" style="color: #d14;">".."</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9199
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<pre style="margin: 0;">+<span id="LC9199" class="line" lang="go"> <span class="n" style="color: #333;">ln</span> <span class="o" style="font-weight: 600;">:=</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">pts</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9200" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9200
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<pre style="margin: 0;">+<span id="LC9200" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">ln</span> <span class="o" style="font-weight: 600;">==</span> <span class="m" style="color: #099;">2</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9201
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<pre style="margin: 0;">+<span id="LC9201" class="line" lang="go"> <span class="n" style="color: #333;">fst</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">pts</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9202" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9202
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<pre style="margin: 0;">+<span id="LC9202" class="line" lang="go"> <span class="n" style="color: #333;">scd</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">pts</span><span class="p">[</span><span class="m" style="color: #099;">1</span><span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9203
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<pre style="margin: 0;">+<span id="LC9203" class="line" lang="go"> <span class="n" style="color: #333;">lf</span> <span class="o" style="font-weight: 600;">:=</span> <span class="s" style="color: #d14;">""</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9204
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<pre style="margin: 0;">+<span id="LC9204" class="line" lang="go"> <span class="n" style="color: #333;">rt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="s" style="color: #d14;">""</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9205" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9205
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<pre style="margin: 0;">+<span id="LC9205" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">fst</span><span class="p">,</span> <span class="s" style="color: #d14;">"<"</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9206" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9206
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<pre style="margin: 0;">+<span id="LC9206" class="line" lang="go"> <span class="n" style="color: #333;">fst</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">fst</span><span class="p">,</span> <span class="s" style="color: #d14;">"<"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9207
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<pre style="margin: 0;">+<span id="LC9207" class="line" lang="go"> <span class="n" style="color: #333;">rt</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">">"</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9208" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9208
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<pre style="margin: 0;">+<span id="LC9208" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9209
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<pre style="margin: 0;">+<span id="LC9209" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">scd</span><span class="p">,</span> <span class="s" style="color: #d14;">">"</span><span class="p">)</span> <span class="p">{</span></span>
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9210
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<pre style="margin: 0;">+<span id="LC9210" class="line" lang="go"> <span class="n" style="color: #333;">scd</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">scd</span><span class="p">,</span> <span class="s" style="color: #d14;">">"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9211
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<pre style="margin: 0;">+<span id="LC9211" class="line" lang="go"> <span class="n" style="color: #333;">lf</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"<"</span></span>
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9212
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<pre style="margin: 0;">+<span id="LC9212" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9213" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9213
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<pre style="margin: 0;">+<span id="LC9213" class="line" lang="go"> <span class="n" style="color: #333;">acc</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">append</span><span class="p">(</span><span class="n" style="color: #333;">acc</span><span class="p">,</span> <span class="n" style="color: #333;">lf</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">scd</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">".."</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">rt</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">fst</span><span class="p">)</span></span>
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9214
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<pre style="margin: 0;">+<span id="LC9214" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">ln</span> <span class="o" style="font-weight: 600;">></span> <span class="m" style="color: #099;">0</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9215" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9215
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<pre style="margin: 0;">+<span id="LC9215" class="line" lang="go"> <span class="n" style="color: #333;">acc</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">append</span><span class="p">(</span><span class="n" style="color: #333;">acc</span><span class="p">,</span> <span class="n" style="color: #333;">pts</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">])</span></span>
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9216
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<pre style="margin: 0;">+<span id="LC9216" class="line" lang="go"> <span class="p">}</span></span>
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9217
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<pre style="margin: 0;">+<span id="LC9217" class="line" lang="go"> <span class="p">}</span></span>
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9218
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<pre style="margin: 0;">+<span id="LC9218" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9219" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9219
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<pre style="margin: 0;">+<span id="LC9219" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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9220
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<pre style="margin: 0;">+<span id="LC9220" class="line" lang="go"></span>
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9221
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<pre style="margin: 0;">+<span id="LC9221" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// save individual interval or point if no leading accession</span></span>
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9222
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<pre style="margin: 0;">+<span id="LC9222" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Index</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">":"</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><</span> <span class="m" style="color: #099;">0</span> <span class="p">{</span></span>
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9223
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<pre style="margin: 0;">+<span id="LC9223" class="line" lang="go"> <span class="n" style="color: #333;">acc</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">append</span><span class="p">(</span><span class="n" style="color: #333;">acc</span><span class="p">,</span> <span class="n" style="color: #333;">str</span><span class="p">)</span></span>
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9224
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<pre style="margin: 0;">+<span id="LC9224" class="line" lang="go"> <span class="p">}</span></span>
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9225
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<pre style="margin: 0;">+<span id="LC9225" class="line" lang="go"> <span class="p">}</span></span>
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9226
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<pre style="margin: 0;">+<span id="LC9226" class="line" lang="go"></span>
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9227
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<pre style="margin: 0;">+<span id="LC9227" class="line" lang="go"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">acc</span></span>
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9228
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<pre style="margin: 0;">+<span id="LC9228" class="line" lang="go"> <span class="p">}</span></span>
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9229
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<pre style="margin: 0;">+<span id="LC9229" class="line" lang="go"></span>
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9230
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<pre style="margin: 0;">+<span id="LC9230" class="line" lang="go"> <span class="n" style="color: #333;">items</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">parseloc</span><span class="p">(</span><span class="n" style="color: #333;">loc</span><span class="p">)</span></span>
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9231
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<pre style="margin: 0;">+<span id="LC9231" class="line" lang="go"></span>
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9232
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<pre style="margin: 0;">+<span id="LC9232" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDFeature_intervals></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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9233
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<pre style="margin: 0;">+<span id="LC9233" class="line" lang="go"></span>
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9234
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<pre style="margin: 0;">+<span id="LC9234" class="line" lang="go"> <span class="n" style="color: #333;">num_ivals</span> <span class="o" style="font-weight: 600;">:=</span> <span class="m" style="color: #099;">0</span></span>
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9235
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9236
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<pre style="margin: 0;">+<span id="LC9236" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// report individual intervals</span></span>
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9237
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<pre style="margin: 0;">+<span id="LC9237" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">_</span><span class="p">,</span> <span class="n" style="color: #333;">thisloc</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">items</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9238" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9238
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<pre style="margin: 0;">+<span id="LC9238" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">thisloc</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">""</span> <span class="p">{</span></span>
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9239
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<pre style="margin: 0;">+<span id="LC9239" class="line" lang="go"> <span class="k" style="font-weight: 600;">continue</span></span>
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9240
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<pre style="margin: 0;">+<span id="LC9240" class="line" lang="go"> <span class="p">}</span></span>
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9241
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<pre style="margin: 0;">+<span id="LC9241" class="line" lang="go"></span>
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9242
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<pre style="margin: 0;">+<span id="LC9242" class="line" lang="go"> <span class="n" style="color: #333;">num_ivals</span><span class="o" style="font-weight: 600;">++</span></span>
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9243
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<pre style="margin: 0;">+<span id="LC9243" class="line" lang="go"></span>
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9244
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<pre style="margin: 0;">+<span id="LC9244" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDInterval></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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9245
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<pre style="margin: 0;">+<span id="LC9245" class="line" lang="go"> <span class="n" style="color: #333;">pts</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Split</span><span class="p">(</span><span class="n" style="color: #333;">thisloc</span><span class="p">,</span> <span class="s" style="color: #d14;">".."</span><span class="p">)</span></span>
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9246
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<pre style="margin: 0;">+<span id="LC9246" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">pts</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="m" style="color: #099;">2</span> <span class="p">{</span></span>
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9247
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<pre style="margin: 0;">+<span id="LC9247" class="line" lang="go"></span>
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9248
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<pre style="margin: 0;">+<span id="LC9248" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// fr..to</span></span>
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9249
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<pre style="margin: 0;">+<span id="LC9249" class="line" lang="go"> <span class="n" style="color: #333;">fr</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">pts</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">]</span></span>
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9250
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<pre style="margin: 0;">+<span id="LC9250" class="line" lang="go"> <span class="n" style="color: #333;">to</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">pts</span><span class="p">[</span><span class="m" style="color: #099;">1</span><span class="p">]</span></span>
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9251
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<pre style="margin: 0;">+<span id="LC9251" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">fr</span><span class="p">,</span> <span class="s" style="color: #d14;">"<"</span><span class="p">)</span> <span class="p">{</span></span>
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9252
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<pre style="margin: 0;">+<span id="LC9252" class="line" lang="go"> <span class="n" style="color: #333;">fr</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">fr</span><span class="p">,</span> <span class="s" style="color: #d14;">"<"</span><span class="p">)</span></span>
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9253
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<pre style="margin: 0;">+<span id="LC9253" class="line" lang="go"> <span class="n" style="color: #333;">prime5</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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9254
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<pre style="margin: 0;">+<span id="LC9254" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9255" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9255
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<pre style="margin: 0;">+<span id="LC9255" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">to</span><span class="p">,</span> <span class="s" style="color: #d14;">">"</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9256" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9256
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<pre style="margin: 0;">+<span id="LC9256" class="line" lang="go"> <span class="n" style="color: #333;">to</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">to</span><span class="p">,</span> <span class="s" style="color: #d14;">">"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9257" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9257
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<pre style="margin: 0;">+<span id="LC9257" class="line" lang="go"> <span class="n" style="color: #333;">prime3</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9258" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9258
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<pre style="margin: 0;">+<span id="LC9258" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9259" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9259
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<pre style="margin: 0;">+<span id="LC9259" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDInterval_from"</span><span class="p">,</span> <span class="n" style="color: #333;">fr</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9260" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9260
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<pre style="margin: 0;">+<span id="LC9260" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDInterval_to"</span><span class="p">,</span> <span class="n" style="color: #333;">to</span><span class="p">)</span></span>
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<td class="diff-line-num new old_line" data-linenumber="8670" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="9261" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9261
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<pre style="margin: 0;">+<span id="LC9261" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">is_comp</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9262
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<pre style="margin: 0;">+<span id="LC9262" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDInterval_iscomp value=</span><span class="se" style="color: #d14;">\"</span><span class="s" style="color: #d14;">true</span><span class="se" style="color: #d14;">\"</span><span class="s" style="color: #d14;">/></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9263" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9263
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<pre style="margin: 0;">+<span id="LC9263" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new old_line" data-linenumber="8670" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="9264" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9264
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<pre style="margin: 0;">+<span id="LC9264" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDInterval_accession"</span><span class="p">,</span> <span class="n" style="color: #333;">accnver</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9265" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9265
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<pre style="margin: 0;">+<span id="LC9265" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9266" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9266
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<pre style="margin: 0;">+<span id="LC9266" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9267
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<pre style="margin: 0;">+<span id="LC9267" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9268" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9268
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<pre style="margin: 0;">+<span id="LC9268" class="line" lang="go"> <span class="n" style="color: #333;">crt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Split</span><span class="p">(</span><span class="n" style="color: #333;">thisloc</span><span class="p">,</span> <span class="s" style="color: #d14;">"^"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9269" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9269
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<pre style="margin: 0;">+<span id="LC9269" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">crt</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="m" style="color: #099;">2</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9270" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9270
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<pre style="margin: 0;">+<span id="LC9270" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9271" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9271
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<pre style="margin: 0;">+<span id="LC9271" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// fr^to</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9272
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<pre style="margin: 0;">+<span id="LC9272" class="line" lang="go"> <span class="n" style="color: #333;">fr</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">crt</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9273" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9273
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<pre style="margin: 0;">+<span id="LC9273" class="line" lang="go"> <span class="n" style="color: #333;">to</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">crt</span><span class="p">[</span><span class="m" style="color: #099;">1</span><span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9274" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9274
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<pre style="margin: 0;">+<span id="LC9274" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDInterval_from"</span><span class="p">,</span> <span class="n" style="color: #333;">fr</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9275" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9275
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<pre style="margin: 0;">+<span id="LC9275" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDInterval_to"</span><span class="p">,</span> <span class="n" style="color: #333;">to</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9276" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9276
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<pre style="margin: 0;">+<span id="LC9276" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">is_comp</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9277" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9277
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<pre style="margin: 0;">+<span id="LC9277" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDInterval_iscomp value=</span><span class="se" style="color: #d14;">\"</span><span class="s" style="color: #d14;">true</span><span class="se" style="color: #d14;">\"</span><span class="s" style="color: #d14;">/></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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9278
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<pre style="margin: 0;">+<span id="LC9278" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9279" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9279
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<pre style="margin: 0;">+<span id="LC9279" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDInterval_interbp value=</span><span class="se" style="color: #d14;">\"</span><span class="s" style="color: #d14;">true</span><span class="se" style="color: #d14;">\"</span><span class="s" style="color: #d14;">/></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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9280
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<pre style="margin: 0;">+<span id="LC9280" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDInterval_accession"</span><span class="p">,</span> <span class="n" style="color: #333;">accnver</span><span class="p">)</span></span>
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9281
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<pre style="margin: 0;">+<span id="LC9281" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9282" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9282
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<pre style="margin: 0;">+<span id="LC9282" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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9283
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<pre style="margin: 0;">+<span id="LC9283" class="line" lang="go"></span>
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9284
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<pre style="margin: 0;">+<span id="LC9284" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// pt</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9285" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9285
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<pre style="margin: 0;">+<span id="LC9285" class="line" lang="go"> <span class="n" style="color: #333;">pt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">pts</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">]</span></span>
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9286
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<pre style="margin: 0;">+<span id="LC9286" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">pt</span><span class="p">,</span> <span class="s" style="color: #d14;">"<"</span><span class="p">)</span> <span class="p">{</span></span>
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9287
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<pre style="margin: 0;">+<span id="LC9287" class="line" lang="go"> <span class="n" style="color: #333;">pt</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">pt</span><span class="p">,</span> <span class="s" style="color: #d14;">"<"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9288" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9288
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<pre style="margin: 0;">+<span id="LC9288" class="line" lang="go"> <span class="n" style="color: #333;">prime5</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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9289
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<pre style="margin: 0;">+<span id="LC9289" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9290" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9290
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<pre style="margin: 0;">+<span id="LC9290" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">pt</span><span class="p">,</span> <span class="s" style="color: #d14;">">"</span><span class="p">)</span> <span class="p">{</span></span>
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9291
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<pre style="margin: 0;">+<span id="LC9291" class="line" lang="go"> <span class="n" style="color: #333;">pt</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">pt</span><span class="p">,</span> <span class="s" style="color: #d14;">">"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9292" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9292
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<pre style="margin: 0;">+<span id="LC9292" class="line" lang="go"> <span class="n" style="color: #333;">prime3</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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9293
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<pre style="margin: 0;">+<span id="LC9293" class="line" lang="go"> <span class="p">}</span></span>
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9294
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<pre style="margin: 0;">+<span id="LC9294" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDInterval_point"</span><span class="p">,</span> <span class="n" style="color: #333;">pt</span><span class="p">)</span></span>
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9295
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<pre style="margin: 0;">+<span id="LC9295" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDInterval_accession"</span><span class="p">,</span> <span class="n" style="color: #333;">accnver</span><span class="p">)</span></span>
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9296
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<pre style="margin: 0;">+<span id="LC9296" class="line" lang="go"> <span class="p">}</span></span>
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9297
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<pre style="margin: 0;">+<span id="LC9297" class="line" lang="go"> <span class="p">}</span></span>
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9298
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<pre style="margin: 0;">+<span id="LC9298" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" </INSDInterval></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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9299
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<pre style="margin: 0;">+<span id="LC9299" class="line" lang="go"> <span class="p">}</span></span>
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9300
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<pre style="margin: 0;">+<span id="LC9300" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9301" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9301
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<pre style="margin: 0;">+<span id="LC9301" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" </INSDFeature_intervals></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9302" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9302
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<pre style="margin: 0;">+<span id="LC9302" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9303" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9303
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<pre style="margin: 0;">+<span id="LC9303" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">num_ivals</span> <span class="o" style="font-weight: 600;">></span> <span class="m" style="color: #099;">1</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9304" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9304
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<pre style="margin: 0;">+<span id="LC9304" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDFeature_operator"</span><span class="p">,</span> <span class="n" style="color: #333;">location_operator</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9305" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9305
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<pre style="margin: 0;">+<span id="LC9305" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9306" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9306
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<pre style="margin: 0;">+<span id="LC9306" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">prime5</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9307" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9307
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<pre style="margin: 0;">+<span id="LC9307" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDFeature_partial5 value=</span><span class="se" style="color: #d14;">\"</span><span class="s" style="color: #d14;">true</span><span class="se" style="color: #d14;">\"</span><span class="s" style="color: #d14;">/></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9308" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9308
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<pre style="margin: 0;">+<span id="LC9308" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9309" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9309
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<pre style="margin: 0;">+<span id="LC9309" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">prime3</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9310" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9310
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<pre style="margin: 0;">+<span id="LC9310" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDFeature_partial3 value=</span><span class="se" style="color: #d14;">\"</span><span class="s" style="color: #d14;">true</span><span class="se" style="color: #d14;">\"</span><span class="s" style="color: #d14;">/></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9311" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9311
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<pre style="margin: 0;">+<span id="LC9311" class="line" lang="go"> <span class="p">}</span></span>
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9312
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<pre style="margin: 0;">+<span id="LC9312" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9313" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9313
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<pre style="margin: 0;">+<span id="LC9313" class="line" lang="go"> <span class="n" style="color: #333;">hasQual</span> <span class="o" style="font-weight: 600;">:=</span> <span class="no" style="color: #008080;">false</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9314" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9314
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<pre style="margin: 0;">+<span id="LC9314" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9315" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9315
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<pre style="margin: 0;">+<span id="LC9315" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="n" style="color: #333;">twentyonespaces</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9316" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9316
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<pre style="margin: 0;">+<span id="LC9316" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// if not qualifier line, break out of loop</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9317" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9317
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<pre style="margin: 0;">+<span id="LC9317" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9318" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9318
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<pre style="margin: 0;">+<span id="LC9318" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9319" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9319
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<pre style="margin: 0;">+<span id="LC9319" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="n" style="color: #333;">twentyonespaces</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9320" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9320
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<pre style="margin: 0;">+<span id="LC9320" class="line" lang="go"> <span class="n" style="color: #333;">qual</span> <span class="o" style="font-weight: 600;">:=</span> <span class="s" style="color: #d14;">""</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9321" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9321
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<pre style="margin: 0;">+<span id="LC9321" class="line" lang="go"> <span class="n" style="color: #333;">val</span> <span class="o" style="font-weight: 600;">:=</span> <span class="s" style="color: #d14;">""</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9322" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9322
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<pre style="margin: 0;">+<span id="LC9322" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">,</span> <span class="s" style="color: #d14;">"/"</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9323" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9323
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<pre style="margin: 0;">+<span id="LC9323" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">hasQual</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9324" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9324
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<pre style="margin: 0;">+<span id="LC9324" class="line" lang="go"> <span class="n" style="color: #333;">hasQual</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9325" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9325
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<pre style="margin: 0;">+<span id="LC9325" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDFeature_quals></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9326" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9326
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<pre style="margin: 0;">+<span id="LC9326" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9327" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9327
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<pre style="margin: 0;">+<span id="LC9327" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// read new qualifier and start of value</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9328" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9328
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<pre style="margin: 0;">+<span id="LC9328" class="line" lang="go"> <span class="n" style="color: #333;">qual</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">,</span> <span class="s" style="color: #d14;">"/"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9329" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9329
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<pre style="margin: 0;">+<span id="LC9329" class="line" lang="go"> <span class="n" style="color: #333;">qual</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">qual</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9330" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9330
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<pre style="margin: 0;">+<span id="LC9330" class="line" lang="go"> <span class="n" style="color: #333;">idx</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Index</span><span class="p">(</span><span class="n" style="color: #333;">qual</span><span class="p">,</span> <span class="s" style="color: #d14;">"="</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9331" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9331
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<pre style="margin: 0;">+<span id="LC9331" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">idx</span> <span class="o" style="font-weight: 600;">></span> <span class="m" style="color: #099;">0</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9332" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9332
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<pre style="margin: 0;">+<span id="LC9332" class="line" lang="go"> <span class="n" style="color: #333;">val</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">qual</span><span class="p">[</span><span class="n" style="color: #333;">idx</span><span class="o" style="font-weight: 600;">+</span><span class="m" style="color: #099;">1</span><span class="o" style="font-weight: 600;">:</span><span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9333" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9333
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<pre style="margin: 0;">+<span id="LC9333" class="line" lang="go"> <span class="n" style="color: #333;">qual</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">qual</span><span class="p">[</span><span class="o" style="font-weight: 600;">:</span><span class="n" style="color: #333;">idx</span><span class="p">]</span></span>
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9334
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<pre style="margin: 0;">+<span id="LC9334" class="line" lang="go"> <span class="p">}</span></span>
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9335
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<pre style="margin: 0;">+<span id="LC9335" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9336" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9336
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<pre style="margin: 0;">+<span id="LC9336" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="p">{</span></span>
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9337
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<pre style="margin: 0;">+<span id="LC9337" class="line" lang="go"> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">nextLine</span><span class="p">()</span></span>
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9338
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<pre style="margin: 0;">+<span id="LC9338" class="line" lang="go"> <span class="n" style="color: #333;">row</span><span class="o" style="font-weight: 600;">++</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9339" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9339
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<pre style="margin: 0;">+<span id="LC9339" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="n" style="color: #333;">twentyonespaces</span><span class="p">)</span> <span class="p">{</span></span>
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9340
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<pre style="margin: 0;">+<span id="LC9340" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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9341
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<pre style="margin: 0;">+<span id="LC9341" class="line" lang="go"> <span class="p">}</span></span>
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9342
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<pre style="margin: 0;">+<span id="LC9342" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="n" style="color: #333;">twentyonespaces</span><span class="p">)</span></span>
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9343
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<pre style="margin: 0;">+<span id="LC9343" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">,</span> <span class="s" style="color: #d14;">"/"</span><span class="p">)</span> <span class="p">{</span></span>
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9344
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<pre style="margin: 0;">+<span id="LC9344" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// if not continuation of qualifier, break out of loop</span></span>
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9345
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<pre style="margin: 0;">+<span id="LC9345" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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9346
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<pre style="margin: 0;">+<span id="LC9346" class="line" lang="go"> <span class="p">}</span></span>
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9347
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<pre style="margin: 0;">+<span id="LC9347" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// append subsequent line to value and continue with loop</span></span>
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9348
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<pre style="margin: 0;">+<span id="LC9348" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">qual</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"transcription"</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">qual</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"translation"</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">qual</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"peptide"</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">qual</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"anticodon"</span> <span class="p">{</span></span>
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9349
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<pre style="margin: 0;">+<span id="LC9349" class="line" lang="go"> <span class="n" style="color: #333;">val</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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9350
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<pre style="margin: 0;">+<span id="LC9350" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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9351
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<pre style="margin: 0;">+<span id="LC9351" class="line" lang="go"> <span class="n" style="color: #333;">val</span> <span class="o" style="font-weight: 600;">+=</span> <span class="s" style="color: #d14;">" "</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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9352
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<pre style="margin: 0;">+<span id="LC9352" class="line" lang="go"> <span class="p">}</span></span>
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9353
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<pre style="margin: 0;">+<span id="LC9353" class="line" lang="go"> <span class="p">}</span></span>
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9354
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<pre style="margin: 0;">+<span id="LC9354" class="line" lang="go"></span>
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9355
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<pre style="margin: 0;">+<span id="LC9355" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" <INSDQualifier></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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9356
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<pre style="margin: 0;">+<span id="LC9356" class="line" lang="go"></span>
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9357
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<pre style="margin: 0;">+<span id="LC9357" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDQualifier_name"</span><span class="p">,</span> <span class="n" style="color: #333;">qual</span><span class="p">)</span></span>
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9358
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<pre style="margin: 0;">+<span id="LC9358" class="line" lang="go"></span>
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9359
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<pre style="margin: 0;">+<span id="LC9359" class="line" lang="go"> <span class="n" style="color: #333;">val</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">val</span><span class="p">,</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\"</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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9360
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<pre style="margin: 0;">+<span id="LC9360" class="line" lang="go"> <span class="n" style="color: #333;">val</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSuffix</span><span class="p">(</span><span class="n" style="color: #333;">val</span><span class="p">,</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\"</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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9361
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<pre style="margin: 0;">+<span id="LC9361" class="line" lang="go"> <span class="n" style="color: #333;">val</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">val</span><span class="p">)</span></span>
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9362
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<pre style="margin: 0;">+<span id="LC9362" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">val</span> <span class="o" style="font-weight: 600;">!=</span> <span class="s" style="color: #d14;">""</span> <span class="p">{</span></span>
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9363
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<pre style="margin: 0;">+<span id="LC9363" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9364" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9364
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<pre style="margin: 0;">+<span id="LC9364" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDQualifier_value"</span><span class="p">,</span> <span class="n" style="color: #333;">val</span><span class="p">)</span></span>
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9365
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<pre style="margin: 0;">+<span id="LC9365" class="line" lang="go"> <span class="p">}</span></span>
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9366
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<pre style="margin: 0;">+<span id="LC9366" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9367" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9367
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<pre style="margin: 0;">+<span id="LC9367" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" </INSDQualifier></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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9368
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<pre style="margin: 0;">+<span id="LC9368" class="line" lang="go"> <span class="p">}</span></span>
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9369
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<pre style="margin: 0;">+<span id="LC9369" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9370" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9370
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<pre style="margin: 0;">+<span id="LC9370" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">hasQual</span> <span class="p">{</span></span>
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9371
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<pre style="margin: 0;">+<span id="LC9371" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" </INSDFeature_quals></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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9372
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<pre style="margin: 0;">+<span id="LC9372" class="line" lang="go"> <span class="p">}</span></span>
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9373
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<pre style="margin: 0;">+<span id="LC9373" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9374" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9374
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<pre style="margin: 0;">+<span id="LC9374" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// end of this feature</span></span>
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9375
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<pre style="margin: 0;">+<span id="LC9375" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" </INSDFeature></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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9376
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<pre style="margin: 0;">+<span id="LC9376" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// continue to next feature</span></span>
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9377
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<pre style="margin: 0;">+<span id="LC9377" class="line" lang="go"> <span class="p">}</span></span>
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9378
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<pre style="margin: 0;">+<span id="LC9378" class="line" lang="go"> <span class="p">}</span></span>
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9379
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<pre style="margin: 0;">+<span id="LC9379" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" </INSDSeq_feature-table></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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9380
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<pre style="margin: 0;">+<span id="LC9380" class="line" lang="go"></span>
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9381
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<pre style="margin: 0;">+<span id="LC9381" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"CONTIG"</span><span class="p">)</span> <span class="p">{</span></span>
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9382
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<pre style="margin: 0;">+<span id="LC9382" class="line" lang="go"></span>
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9383
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<pre style="margin: 0;">+<span id="LC9383" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// pathological records can have over 90,000 components, use strings.Builder</span></span>
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9384
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<pre style="margin: 0;">+<span id="LC9384" class="line" lang="go"> <span class="n" style="color: #333;">con</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Reset</span><span class="p">()</span></span>
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9385
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<pre style="margin: 0;">+<span id="LC9385" class="line" lang="go"></span>
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9386
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<pre style="margin: 0;">+<span id="LC9386" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"CONTIG"</span><span class="p">)</span></span>
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9387
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<pre style="margin: 0;">+<span id="LC9387" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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9388
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<pre style="margin: 0;">+<span id="LC9388" class="line" lang="go"> <span class="n" style="color: #333;">con</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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9389
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<pre style="margin: 0;">+<span id="LC9389" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="p">{</span></span>
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9390
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<pre style="margin: 0;">+<span id="LC9390" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// read next line</span></span>
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9391
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<pre style="margin: 0;">+<span id="LC9391" class="line" lang="go"> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">nextLine</span><span class="p">()</span></span>
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9392
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<pre style="margin: 0;">+<span id="LC9392" class="line" lang="go"> <span class="n" style="color: #333;">row</span><span class="o" style="font-weight: 600;">++</span></span>
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9393
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<pre style="margin: 0;">+<span id="LC9393" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="n" style="color: #333;">twelvespaces</span><span class="p">)</span> <span class="p">{</span></span>
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9394
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<pre style="margin: 0;">+<span id="LC9394" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// if not continuation of contig, break out of loop</span></span>
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9395
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<pre style="margin: 0;">+<span id="LC9395" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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9396
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<pre style="margin: 0;">+<span id="LC9396" class="line" lang="go"> <span class="p">}</span></span>
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9397
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<pre style="margin: 0;">+<span id="LC9397" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// append subsequent line and continue with loop</span></span>
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9398
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<pre style="margin: 0;">+<span id="LC9398" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="n" style="color: #333;">twelvespaces</span><span class="p">)</span></span>
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9399
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<pre style="margin: 0;">+<span id="LC9399" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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9400
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<pre style="margin: 0;">+<span id="LC9400" class="line" lang="go"> <span class="n" style="color: #333;">con</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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9401
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<pre style="margin: 0;">+<span id="LC9401" class="line" lang="go"> <span class="p">}</span></span>
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9402
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<pre style="margin: 0;">+<span id="LC9402" class="line" lang="go"> <span class="p">}</span></span>
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9403
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<pre style="margin: 0;">+<span id="LC9403" class="line" lang="go"></span>
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9404
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<pre style="margin: 0;">+<span id="LC9404" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"BASE COUNT"</span><span class="p">)</span> <span class="p">{</span></span>
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9405
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<pre style="margin: 0;">+<span id="LC9405" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9406" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9406
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<pre style="margin: 0;">+<span id="LC9406" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"BASE COUNT"</span><span class="p">)</span></span>
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9407
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<pre style="margin: 0;">+<span id="LC9407" class="line" lang="go"> <span class="n" style="color: #333;">readContinuationLines</span><span class="p">(</span><span class="n" style="color: #333;">txt</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9408" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9408
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<pre style="margin: 0;">+<span id="LC9408" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// not supported</span></span>
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9409
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<pre style="margin: 0;">+<span id="LC9409" class="line" lang="go"> <span class="p">}</span></span>
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9410
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<pre style="margin: 0;">+<span id="LC9410" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9411" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9411
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<pre style="margin: 0;">+<span id="LC9411" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"ORIGIN"</span><span class="p">)</span> <span class="p">{</span></span>
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9412
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<pre style="margin: 0;">+<span id="LC9412" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9413" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9413
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<pre style="margin: 0;">+<span id="LC9413" class="line" lang="go"> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">nextLine</span><span class="p">()</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9414" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9414
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<pre style="margin: 0;">+<span id="LC9414" class="line" lang="go"> <span class="n" style="color: #333;">row</span><span class="o" style="font-weight: 600;">++</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9415" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9415
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<pre style="margin: 0;">+<span id="LC9415" class="line" lang="go"> <span class="p">}</span></span>
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9416
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<pre style="margin: 0;">+<span id="LC9416" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9417" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9417
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<pre style="margin: 0;">+<span id="LC9417" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// remainder should be sequence</span></span>
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9418
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<pre style="margin: 0;">+<span id="LC9418" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9419" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9419
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<pre style="margin: 0;">+<span id="LC9419" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// sequence can be millions of bases, use strings.Builder</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9420
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<pre style="margin: 0;">+<span id="LC9420" class="line" lang="go"> <span class="n" style="color: #333;">seq</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Reset</span><span class="p">()</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9421" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9421
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<pre style="margin: 0;">+<span id="LC9421" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9422" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9422
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<pre style="margin: 0;">+<span id="LC9422" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">!=</span> <span class="s" style="color: #d14;">""</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9423" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9423
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<pre style="margin: 0;">+<span id="LC9423" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9424" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9424
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<pre style="margin: 0;">+<span id="LC9424" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">,</span> <span class="s" style="color: #d14;">"//"</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9425" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9425
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<pre style="margin: 0;">+<span id="LC9425" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9426" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9426
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<pre style="margin: 0;">+<span id="LC9426" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// end of record, print collected sequence</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9427" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9427
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<pre style="margin: 0;">+<span id="LC9427" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">seq</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">String</span><span class="p">()</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9428" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9428
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<pre style="margin: 0;">+<span id="LC9428" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">!=</span> <span class="s" style="color: #d14;">""</span> <span class="p">{</span></span>
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9429
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<pre style="margin: 0;">+<span id="LC9429" class="line" lang="go"></span>
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9430
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<pre style="margin: 0;">+<span id="LC9430" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_sequence"</span><span class="p">,</span> <span class="n" style="color: #333;">str</span><span class="p">)</span></span>
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9431
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<pre style="margin: 0;">+<span id="LC9431" class="line" lang="go"> <span class="p">}</span></span>
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9432
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<pre style="margin: 0;">+<span id="LC9432" class="line" lang="go"> <span class="n" style="color: #333;">seq</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Reset</span><span class="p">()</span></span>
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9433
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<pre style="margin: 0;">+<span id="LC9433" class="line" lang="go"></span>
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9434
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<pre style="margin: 0;">+<span id="LC9434" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// print contig section</span></span>
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9435
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<pre style="margin: 0;">+<span id="LC9435" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">con</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">String</span><span class="p">()</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9436" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9436
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<pre style="margin: 0;">+<span id="LC9436" class="line" lang="go"> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TrimSpace</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9437" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9437
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<pre style="margin: 0;">+<span id="LC9437" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">!=</span> <span class="s" style="color: #d14;">""</span> <span class="p">{</span></span>
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9438
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<pre style="margin: 0;">+<span id="LC9438" class="line" lang="go"> <span class="n" style="color: #333;">writeOneElement</span><span class="p">(</span><span class="s" style="color: #d14;">" "</span><span class="p">,</span> <span class="s" style="color: #d14;">"INSDSeq_contig"</span><span class="p">,</span> <span class="n" style="color: #333;">str</span><span class="p">)</span></span>
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9439
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<pre style="margin: 0;">+<span id="LC9439" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9440" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9440
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<pre style="margin: 0;">+<span id="LC9440" class="line" lang="go"> <span class="n" style="color: #333;">con</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Reset</span><span class="p">()</span></span>
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9441
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<pre style="margin: 0;">+<span id="LC9441" class="line" lang="go"></span>
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9442
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<pre style="margin: 0;">+<span id="LC9442" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// end of record</span></span>
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9443
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<pre style="margin: 0;">+<span id="LC9443" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">" </INSDSeq></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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9444
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<pre style="margin: 0;">+<span id="LC9444" class="line" lang="go"></span>
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9445
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<pre style="margin: 0;">+<span id="LC9445" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// send formatted record down channel</span></span>
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9446
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<pre style="margin: 0;">+<span id="LC9446" class="line" lang="go"> <span class="n" style="color: #333;">txt</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">String</span><span class="p">()</span></span>
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9447
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<pre style="margin: 0;">+<span id="LC9447" class="line" lang="go"> <span class="n" style="color: #333;">out</span> <span class="o" style="font-weight: 600;"><-</span> <span class="n" style="color: #333;">txt</span></span>
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9448
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<pre style="margin: 0;">+<span id="LC9448" class="line" lang="go"> <span class="n" style="color: #333;">rec</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Reset</span><span class="p">()</span></span>
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9449
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<pre style="margin: 0;">+<span id="LC9449" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// go to top of loop for next record</span></span>
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9450
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<pre style="margin: 0;">+<span id="LC9450" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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9451
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<pre style="margin: 0;">+<span id="LC9451" class="line" lang="go"> <span class="p">}</span></span>
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9452
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<pre style="margin: 0;">+<span id="LC9452" class="line" lang="go"></span>
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9453
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<pre style="margin: 0;">+<span id="LC9453" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// read next sequence line</span></span>
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9454
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<pre style="margin: 0;">+<span id="LC9454" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9455" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9455
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<pre style="margin: 0;">+<span id="LC9455" class="line" lang="go"> <span class="n" style="color: #333;">cols</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fields</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9456" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9456
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<pre style="margin: 0;">+<span id="LC9456" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">_</span><span class="p">,</span> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">cols</span> <span class="p">{</span></span>
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9457
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<pre style="margin: 0;">+<span id="LC9457" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9458" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9458
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<pre style="margin: 0;">+<span id="LC9458" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">IsAllDigits</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9459" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9459
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<pre style="margin: 0;">+<span id="LC9459" class="line" lang="go"> <span class="k" style="font-weight: 600;">continue</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9460" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9460
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<pre style="margin: 0;">+<span id="LC9460" class="line" lang="go"> <span class="p">}</span></span>
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9461
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<pre style="margin: 0;">+<span id="LC9461" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="9462" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9462
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<pre style="margin: 0;">+<span id="LC9462" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// append letters to sequence</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9463" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9463
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<pre style="margin: 0;">+<span id="LC9463" class="line" lang="go"> <span class="n" style="color: #333;">seq</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9464" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9464
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<pre style="margin: 0;">+<span id="LC9464" class="line" lang="go"> <span class="p">}</span></span>
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9465
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<pre style="margin: 0;">+<span id="LC9465" class="line" lang="go"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="9466" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9466
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<pre style="margin: 0;">+<span id="LC9466" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// read next line and continue</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9467" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9467
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<pre style="margin: 0;">+<span id="LC9467" class="line" lang="go"> <span class="n" style="color: #333;">line</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">nextLine</span><span class="p">()</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9468" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9468
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<pre style="margin: 0;">+<span id="LC9468" class="line" lang="go"> <span class="n" style="color: #333;">row</span><span class="o" style="font-weight: 600;">++</span></span>
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9469
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<pre style="margin: 0;">+<span id="LC9469" class="line" lang="go"></span>
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9470
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<pre style="margin: 0;">+<span id="LC9470" class="line" lang="go"> <span class="p">}</span></span>
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9471
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<pre style="margin: 0;">+<span id="LC9471" class="line" lang="go"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="9472" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9472
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<pre style="margin: 0;">+<span id="LC9472" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// continue to next record</span></span>
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9473
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<pre style="margin: 0;">+<span id="LC9473" class="line" lang="go"> <span class="p">}</span></span>
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9474
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<pre style="margin: 0;">+<span id="LC9474" class="line" lang="go"> <span class="p">}</span></span>
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9475
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<pre style="margin: 0;">+<span id="LC9475" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC9476" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// launch single converter goroutine</span></span>
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9477
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<pre style="margin: 0;">+<span id="LC9477" class="line" lang="go"> <span class="k" style="font-weight: 600;">go</span> <span class="n" style="color: #333;">convertGenBank</span><span class="p">(</span><span class="n" style="color: #333;">inp</span><span class="p">,</span> <span class="n" style="color: #333;">out</span><span class="p">)</span></span>
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9478
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<pre style="margin: 0;">+<span id="LC9478" class="line" lang="go"></span>
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9479
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<pre style="margin: 0;">+<span id="LC9479" class="line" lang="go"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">out</span></span>
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9480
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<pre style="margin: 0;">+<span id="LC9480" class="line" lang="go"><span class="p">}</span></span>
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9481
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<pre style="margin: 0;">+<span id="LC9481" class="line" lang="go"></span>
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8670
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9482
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<pre style="margin: 0;"> <span id="LC9482" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// MAIN FUNCTION</span></span>
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8671
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9483
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<pre style="margin: 0;"> <span id="LC9483" class="line" lang="go"></span>
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<pre style="margin: 0;"> <span id="LC9484" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// e.g., xtract -pattern PubmedArticle -element MedlineCitation/PMID -block Author -sep " " -element Initials,LastName</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="10109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9297,6 +10109,62 @@ func main() {</td>
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9297
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10109
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<pre style="margin: 0;"> <span id="LC10109" class="line" lang="go"> <span class="k" style="font-weight: 600;">return</span></span>
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9298
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10110
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<pre style="margin: 0;"> <span id="LC10110" class="line" lang="go"> <span class="p">}</span></span>
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9299
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10111
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<pre style="margin: 0;"> <span id="LC10111" class="line" lang="go"></span>
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10112
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<pre style="margin: 0;">+<span id="LC10112" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// READ GENBANK FLATFILE AND TRANSLATE TO INSDSEQ XML</span></span>
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10113
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<pre style="margin: 0;">+<span id="LC10113" class="line" lang="go"></span>
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10114
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<pre style="margin: 0;">+<span id="LC10114" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// must be called before CreateReader starts draining stdin</span></span>
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10115
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<pre style="margin: 0;">+<span id="LC10115" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">args</span><span class="p">)</span> <span class="o" style="font-weight: 600;">></span> <span class="m" style="color: #099;">0</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">args</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"-g2x"</span> <span class="p">{</span></span>
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10116
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<pre style="margin: 0;">+<span id="LC10116" class="line" lang="go"></span>
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10117
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<pre style="margin: 0;">+<span id="LC10117" class="line" lang="go"> <span class="n" style="color: #333;">gbk</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">GenBankConverter</span><span class="p">(</span><span class="n" style="color: #333;">in</span><span class="p">)</span></span>
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10118
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<pre style="margin: 0;">+<span id="LC10118" class="line" lang="go"></span>
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10119
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<pre style="margin: 0;">+<span id="LC10119" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">gbk</span> <span class="o" style="font-weight: 600;">==</span> <span class="no" style="color: #008080;">nil</span> <span class="p">{</span></span>
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10120
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<pre style="margin: 0;">+<span id="LC10120" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">"Unable to create GenBank to XML converter</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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10121
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<pre style="margin: 0;">+<span id="LC10121" class="line" lang="go"> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Exit</span><span class="p">(</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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10122
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<pre style="margin: 0;">+<span id="LC10122" class="line" lang="go"> <span class="p">}</span></span>
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10123
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<pre style="margin: 0;">+<span id="LC10123" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="10124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10124
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<pre style="margin: 0;">+<span id="LC10124" class="line" lang="go"> <span class="n" style="color: #333;">head</span> <span class="o" style="font-weight: 600;">:=</span> <span class="s" style="color: #d14;">`<?xml version="1.0" encoding="UTF-8"?></span></span>
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<td class="diff-line-num new new_line" data-linenumber="10125" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10125
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<pre style="margin: 0;">+<span id="LC10125" class="line" lang="go"><span class="s" style="color: #d14;"><!DOCTYPE INSDSet PUBLIC "-//NCBI//INSD INSDSeq/EN" "http://www.ncbi.nlm.nih.gov/dtd/INSD_INSDSeq.dtd"></span></span>
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<td class="diff-line-num new new_line" data-linenumber="10126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10126
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<pre style="margin: 0;">+<span id="LC10126" class="line" lang="go"><span class="s" style="color: #d14;"><INSDSet></span></span>
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<td class="diff-line-num new new_line" data-linenumber="10127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10127
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<pre style="margin: 0;">+<span id="LC10127" class="line" lang="go"><span class="s" style="color: #d14;">`</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10128" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10128
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<pre style="margin: 0;">+<span id="LC10128" class="line" lang="go"> <span class="n" style="color: #333;">tail</span> <span class="o" style="font-weight: 600;">:=</span> <span class="s" style="color: #d14;">""</span></span>
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10129
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<pre style="margin: 0;">+<span id="LC10129" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="10130" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10130
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<pre style="margin: 0;">+<span id="LC10130" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// drain output of last channel in service chain</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10131
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<pre style="margin: 0;">+<span id="LC10131" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">gbk</span> <span class="p">{</span></span>
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10132
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<pre style="margin: 0;">+<span id="LC10132" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="10133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10133
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<pre style="margin: 0;">+<span id="LC10133" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">""</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10134
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<pre style="margin: 0;">+<span id="LC10134" class="line" lang="go"> <span class="k" style="font-weight: 600;">continue</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10135
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<pre style="margin: 0;">+<span id="LC10135" class="line" lang="go"> <span class="p">}</span></span>
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10136
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<pre style="margin: 0;">+<span id="LC10136" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="10137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10137
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<pre style="margin: 0;">+<span id="LC10137" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">head</span> <span class="o" style="font-weight: 600;">!=</span> <span class="s" style="color: #d14;">""</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10138" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10138
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<pre style="margin: 0;">+<span id="LC10138" class="line" lang="go"> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stdout</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="n" style="color: #333;">head</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10139
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<pre style="margin: 0;">+<span id="LC10139" class="line" lang="go"> <span class="n" style="color: #333;">head</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">""</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10140" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10140
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<pre style="margin: 0;">+<span id="LC10140" class="line" lang="go"> <span class="n" style="color: #333;">tail</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">`</INSDSet></span></span>
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<td class="diff-line-num new new_line" data-linenumber="10141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10141
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<pre style="margin: 0;">+<span id="LC10141" class="line" lang="go"><span class="s" style="color: #d14;">`</span></span>
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10142
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<pre style="margin: 0;">+<span id="LC10142" class="line" lang="go"> <span class="p">}</span></span>
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10143
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<pre style="margin: 0;">+<span id="LC10143" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="10144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10144
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<pre style="margin: 0;">+<span id="LC10144" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// send result to stdout</span></span>
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10145
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<pre style="margin: 0;">+<span id="LC10145" class="line" lang="go"> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stdout</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10146
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<pre style="margin: 0;">+<span id="LC10146" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasSuffix</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10147
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<pre style="margin: 0;">+<span id="LC10147" class="line" lang="go"> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stdout</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10148
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<pre style="margin: 0;">+<span id="LC10148" class="line" lang="go"> <span class="p">}</span></span>
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10149
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<pre style="margin: 0;">+<span id="LC10149" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="10150" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10150
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<pre style="margin: 0;">+<span id="LC10150" class="line" lang="go"> <span class="n" style="color: #333;">recordCount</span><span class="o" style="font-weight: 600;">++</span></span>
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10151
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<pre style="margin: 0;">+<span id="LC10151" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="10152" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10152
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<pre style="margin: 0;">+<span id="LC10152" class="line" lang="go"> <span class="n" style="color: #333;">runtime</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Gosched</span><span class="p">()</span></span>
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10153
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<pre style="margin: 0;">+<span id="LC10153" class="line" lang="go"> <span class="p">}</span></span>
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10154
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<pre style="margin: 0;">+<span id="LC10154" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="10155" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10155
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<pre style="margin: 0;">+<span id="LC10155" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">tail</span> <span class="o" style="font-weight: 600;">!=</span> <span class="s" style="color: #d14;">""</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10156" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10156
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<pre style="margin: 0;">+<span id="LC10156" class="line" lang="go"> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stdout</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="n" style="color: #333;">tail</span><span class="p">)</span></span>
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10157
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<pre style="margin: 0;">+<span id="LC10157" class="line" lang="go"> <span class="p">}</span></span>
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10158
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<pre style="margin: 0;">+<span id="LC10158" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="10159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10159
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<pre style="margin: 0;">+<span id="LC10159" class="line" lang="go"> <span class="n" style="color: #333;">debug</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">FreeOSMemory</span><span class="p">()</span></span>
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10160
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<pre style="margin: 0;">+<span id="LC10160" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="10161" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10161
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<pre style="margin: 0;">+<span id="LC10161" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">timr</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10162
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<pre style="margin: 0;">+<span id="LC10162" class="line" lang="go"> <span class="n" style="color: #333;">printDuration</span><span class="p">(</span><span class="s" style="color: #d14;">"records"</span><span class="p">)</span></span>
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10163
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<pre style="margin: 0;">+<span id="LC10163" class="line" lang="go"> <span class="p">}</span></span>
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10164
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<pre style="margin: 0;">+<span id="LC10164" class="line" lang="go"></span>
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10165
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<pre style="margin: 0;">+<span id="LC10165" class="line" lang="go"> <span class="k" style="font-weight: 600;">return</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10166" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10166
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<pre style="margin: 0;">+<span id="LC10166" class="line" lang="go"> <span class="p">}</span></span>
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10167
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<pre style="margin: 0;">+<span id="LC10167" class="line" lang="go"></span>
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9300
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10168
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<pre style="margin: 0;"> <span id="LC10168" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// CREATE XML BLOCK READER FROM STDIN OR FILE</span></span>
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9301
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<td class="diff-line-num new_line" data-linenumber="10169" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10169
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<pre style="margin: 0;"> <span id="LC10169" class="line" lang="go"></span>
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9302
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10170
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<pre style="margin: 0;"> <span id="LC10170" class="line" lang="go"> <span class="n" style="color: #333;">rdr</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">CreateReader</span><span class="p">(</span><span class="n" style="color: #333;">in</span><span class="p">)</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="9468" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="10336" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9468,10 +10336,9 @@ func main() {</td>
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9468
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<td class="diff-line-num new_line" data-linenumber="10336" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10336
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<pre style="margin: 0;"> <span id="LC10336" class="line" lang="go"></span>
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9469
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<td class="diff-line-num new_line" data-linenumber="10337" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10337
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<pre style="margin: 0;"> <span id="LC10337" class="line" lang="go"> <span class="k" style="font-weight: 600;">switch</span> <span class="n" style="color: #333;">args</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">]</span> <span class="p">{</span></span>
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9470
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<td class="diff-line-num new_line" data-linenumber="10338" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10338
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<pre style="margin: 0;"> <span id="LC10338" class="line" lang="go"> <span class="k" style="font-weight: 600;">case</span> <span class="s" style="color: #d14;">"-format"</span><span class="o" style="font-weight: 600;">:</span></span>
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<td class="diff-line-num old old_line" data-linenumber="9471" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9471
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<td class="diff-line-num new_line old" data-linenumber="10339" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9471" class="line" lang="go"> <span class="n" style="color: #333;"><span class="idiff left">ProcessFormat</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">rdr</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">args</span></span><span class="p">)</span></span>
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10339
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<pre style="margin: 0;">+<span id="LC10339" class="line" lang="go"> <span class="n" style="color: #333;"><span class="idiff left">recordCount</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">ProcessFormat</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">rdr</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">args</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">timr</span></span><span class="p">)</span></span>
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9472
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<td class="diff-line-num new_line" data-linenumber="10340" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10340
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<pre style="margin: 0;"> <span id="LC10340" class="line" lang="go"> <span class="k" style="font-weight: 600;">case</span> <span class="s" style="color: #d14;">"-verify"</span><span class="p">,</span> <span class="s" style="color: #d14;">"-validate"</span><span class="o" style="font-weight: 600;">:</span></span>
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9473
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<pre style="margin: 0;">-<span id="LC9473" class="line" lang="go"> <span class="n" style="color: #333;">CountLines</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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9474
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<pre style="margin: 0;">-<span id="LC9474" class="line" lang="go"> <span class="n" style="color: #333;">ProcessVerify</span><span class="p">(</span><span class="n" style="color: #333;">rdr</span><span class="p">,</span> <span class="n" style="color: #333;">args</span><span class="p">)</span></span>
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10341
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<pre style="margin: 0;">+<span id="LC10341" class="line" lang="go"> <span class="n" style="color: #333;">recordCount</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ProcessVerify</span><span class="p">(</span><span class="n" style="color: #333;">rdr</span><span class="p">,</span> <span class="n" style="color: #333;">args</span><span class="p">)</span></span>
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9475
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<td class="diff-line-num new_line" data-linenumber="10342" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10342
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<pre style="margin: 0;"> <span id="LC10342" class="line" lang="go"> <span class="k" style="font-weight: 600;">case</span> <span class="s" style="color: #d14;">"-filter"</span><span class="o" style="font-weight: 600;">:</span></span>
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<td class="diff-line-num old_line" data-linenumber="9476" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9476
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<td class="diff-line-num new_line" data-linenumber="10343" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10343
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<pre style="margin: 0;"> <span id="LC10343" class="line" lang="go"> <span class="n" style="color: #333;">ProcessFilter</span><span class="p">(</span><span class="n" style="color: #333;">rdr</span><span class="p">,</span> <span class="n" style="color: #333;">args</span><span class="p">)</span></span>
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<td class="diff-line-num old_line" data-linenumber="9477" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9477
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<td class="diff-line-num new_line" data-linenumber="10344" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10344
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<pre style="margin: 0;"> <span id="LC10344" class="line" lang="go"> <span class="k" style="font-weight: 600;">case</span> <span class="s" style="color: #d14;">"-normalize"</span><span class="p">,</span> <span class="s" style="color: #d14;">"-normal"</span><span class="o" style="font-weight: 600;">:</span></span>
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