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<h3>
Shayan Doust pushed to branch master
at <a href="https://salsa.debian.org/med-team/graphbin">Debian Med / graphbin</a>
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<h4>
Commits:
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<ul>
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<strong><a href="https://salsa.debian.org/med-team/graphbin/-/commit/941ded236275215c4f8541d2a22964e45de56949">941ded23</a></strong>
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<span>by Shayan Doust</span>
<i>at 2020-07-15T18:51:16+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Patch prepResults python file to include the line "import subprocess"
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<h4>2 changed files:</h4>
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<a href="#de5f8d5191ffde0acf5c2cb3bd6079d9806ffa54">
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+
debian/patches/fix_python_files.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="de5f8d5191ffde0acf5c2cb3bd6079d9806ffa54">
<a href="https://salsa.debian.org/med-team/graphbin/-/commit/941ded236275215c4f8541d2a22964e45de56949#de5f8d5191ffde0acf5c2cb3bd6079d9806ffa54"><strong>debian/patches/fix_python_files.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- graphbin.orig/support/prepResult.py</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ graphbin/support/prepResult.py</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">@@ -13,6 +13,7 @@</span></span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"> import csv</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"> import argparse</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> import re</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+import subprocess</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> from Bio import SeqIO</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="p">@@ -209,4 +210,4 @@</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> # Exit program</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> #--------------</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-print("\nThank you for using prepResult for GraphBin!\n")</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span> No newline at end of file</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+print("\nThank you for using prepResult for GraphBin!\n")</span></span></pre>
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<a href="https://salsa.debian.org/med-team/graphbin/-/commit/941ded236275215c4f8541d2a22964e45de56949#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">fix_python_files.patch</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">change_python_script_paths.patch</span></pre>
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