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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/dextractor">Debian Med / dextractor</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/dextractor/-/commit/e7396d062ebcb6abe54a98b3115a818eae07e7c6">e7396d06</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-07-15T14:37:28+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Remove trailing whitespace in debian/control
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/dextractor/-/commit/36fe2c4b98d8db52de9084ac9e8c4a61e8659ab3">36fe2c4b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-07-15T14:37:28+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Remove trailing whitespace in debian/copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/dextractor/-/commit/99b76ae20a36b0a5fbfdb16b93bfea157d8aa3fd">99b76ae2</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-07-15T14:37:28+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/dextractor/-/commit/11e12382758c78c70df497c6fec6c69b27d2d5f6">11e12382</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-07-15T14:37:31+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Bug-Database, Bug-Submit.
Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/dextractor/-/commit/6e256cdddb82baa573b4f02e969cb24a346f62a9">6e256cdd</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-07-15T14:38:04+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
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<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/dextractor/-/compare/087a688e6a499708ad09e8f4980452c6dd6fa6a0...6e256cdddb82baa573b4f02e969cb24a346f62a9#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">dextractor (1.0-2) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team upload.</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Remove trailing whitespace in debian/control (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Remove trailing whitespace in debian/copyright (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Rules-Requires-Root: no (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Set upstream metadata fields: Bug-Database, Bug-Submit.</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Wed, 15 Jul 2020 14:37:31 +0200</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">dextractor (1.0-1) unstable; urgency=medium</span>
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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> * Initial release (Closes: #963981)</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/dextractor/-/compare/087a688e6a499708ad09e8f4980452c6dd6fa6a0...6e256cdddb82baa573b4f02e969cb24a346f62a9#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9,6 +9,7 @@ Standards-Version: 4.5.0</td>
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/dextractor</span>
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<td class="diff-line-num old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/dextractor.git</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Homepage: https://github.com/thegenemyers/DEXTRACTOR</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">Rules-Requires-Root: no</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">Package: dextractor</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">Architecture: any</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -20,7 +21,7 @@ Description: (d)extractor and compression command library</td>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> files produced by the PacBio RS II sequencer, or from the source BAM</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> files produced by the PacBio Sequel sequencer.</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> For each of the three extracted file types -- fasta, quiva, and<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> For each of the three extracted file types -- fasta, quiva, and</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> arrow -- the library contains commands to compress the given file</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> type, and to decompress it, which is a reversible process delivering</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> the original uncompressed file. The compressed .fasta files, with the</span>
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<a href="https://salsa.debian.org/med-team/dextractor/-/compare/087a688e6a499708ad09e8f4980452c6dd6fa6a0...6e256cdddb82baa573b4f02e969cb24a346f62a9#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -11,25 +11,25 @@ Copyright: 2020 Shayan Doust <hello@shayandoust.me></td>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">License: BSD-3-Clause</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">License: BSD-3-Clause</span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> Redistribution and use in source and binary forms, with or without modification,<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> are permitted provided that the following conditions are met:<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> .<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> * Redistributions of source code must retain the above copyright notice, this<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> list of conditions and the following disclaimer.<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> .<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> * Redistributions in binary form must reproduce the above copyright notice, this<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> list of conditions and the following disclaimer in the documentation and/or<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> other materials provided with the distribution.<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> .<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> * The name of EWM may not be used to endorse or promote products derived from<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> this software without specific prior written permission.<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> .<span class="idiff left right"> </span></span>
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27
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"> THIS SOFTWARE IS PROVIDED BY EWM ”AS IS” AND ANY EXPRESS OR IMPLIED WARRANTIES,<span class="idiff left right"> </span></span>
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28
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND<span class="idiff left right"> </span></span>
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29
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL EWM BE LIABLE<span class="idiff left right"> </span></span>
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30
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"> FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES<span class="idiff left right"> </span></span>
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31
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"> (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS<span class="idiff left right"> </span></span>
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32
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext"> OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY<span class="idiff left right"> </span></span>
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33
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"> THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING<span class="idiff left right"> </span></span>
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34
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN<span class="idiff left right"> </span></span>
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35
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.<span class="idiff left right"> </span></span></pre>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> Redistribution and use in source and binary forms, with or without modification,</span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> are permitted provided that the following conditions are met:</span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> .</span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> * Redistributions of source code must retain the above copyright notice, this</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> list of conditions and the following disclaimer.</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> .</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> * Redistributions in binary form must reproduce the above copyright notice, this</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> list of conditions and the following disclaimer in the documentation and/or</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> other materials provided with the distribution.</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> .</span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> * The name of EWM may not be used to endorse or promote products derived from</span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> this software without specific prior written permission.</span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> .</span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> THIS SOFTWARE IS PROVIDED BY EWM ”AS IS” AND ANY EXPRESS OR IMPLIED WARRANTIES,</span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL EWM BE LIABLE</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES</span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></pre>
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<li id="f5606a935d95a2f20059a7ac1136f47b2edadbf6">
<a href="https://salsa.debian.org/med-team/dextractor/-/compare/087a688e6a499708ad09e8f4980452c6dd6fa6a0...6e256cdddb82baa573b4f02e969cb24a346f62a9#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Bug-Database: https://github.com/thegenemyers/DEXTRACTOR/issues</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Bug-Submit: https://github.com/thegenemyers/DEXTRACTOR/issues/new</span>
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1
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Registry:</span>
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2
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> - Name: conda:bioconda</span>
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3
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> Entry: dextractor</span>
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