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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/35aaf5aa763b8422a635f36590e0e1344f533ebd">35aaf5aa</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-07-16T13:44:33+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
</ul>
<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/35aaf5aa763b8422a635f36590e0e1344f533ebd#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Thu, 16 Jul 2020 <span class="idiff left right">01</span>:42:04 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Thu, 16 Jul 2020 <span class="idiff left right">13</span>:42:04 +0000</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source                        | Vote   |     Tasks                                           |                                 Tags                                 </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk                         |    17<span class="idiff left right">6</span> | {covid-19,imaging}                                  | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk                         |    17<span class="idiff left right">1</span> | {covid-19,imaging}                                  | </span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> orthanc                       |     88 | {covid-19,imaging,practice}                         | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> gdcm                          |     4<span class="idiff left right">7</span> | {imaging-dev}                                       | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> orthanc-wsi                   |     4<span class="idiff left right">2</span> | {his,practice,covid-19,laboratory,imaging,oncology} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> htsjdk                        |     3<span class="idiff left right">2</span> | {bio-dev}                                           | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> gdcm                          |     4<span class="idiff left right">6</span> | {imaging-dev}                                       | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> orthanc-wsi                   |     4<span class="idiff left right">3</span> | {his,practice,covid-19,laboratory,imaging,oncology} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> htsjdk                        |     3<span class="idiff left right">1</span> | {bio-dev}                                           | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> dcm2niix                      |     22 | {imaging}                                           | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dicom3tools                   |     22 | {imaging}                                           | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> dicomscope                    |     <span class="idiff left right">20</span> | {imaging}                                           | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dicomscope                    |     <span class="idiff left right">19</span> | {imaging}                                           | </span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> gnumed-server                 |     18 | {practice,covid-19}                                 | </span>
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14
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<td class="diff-line-num new_line old" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> ngs-sdk                       |     1<span class="idiff left right">7</span> | {bio-dev}                                           | </span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> ngs-sdk                       |     1<span class="idiff left right">5</span> | {bio-dev}                                           | </span>
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<td class="diff-line-num old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> gdcm                          |     13 | {covid-19,imaging}                                  | </span>
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<td class="diff-line-num new old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> insighttoolkit4               |     13 | {imaging-dev}                                       | </span>
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<td class="diff-line-num old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> invesalius                    |     13 | {imaging}                                           | </span>
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<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> gdcm                          |     12 | {imaging-dev}                                       | </span>
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<td class="diff-line-num new_line old" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> insighttoolkit4               |     12 | {imaging-dev}                                       | </span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> jebl2                         |     11 | {bio-dev}                                           | </span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> pixelmed                      |     11 | {imaging}                                           | </span>
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<td class="diff-line-num new old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> pixelmed                      |     12 | {imaging}                                           | </span>
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<td class="diff-line-num new old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> jebl2                         |     10 | {bio-dev}                                           | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> minc-tools                    |     10 | {imaging}                                           | </span>
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<td class="diff-line-num old old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> ngs-sdk                       |     10 | {bio-dev}                                           | </span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> adun.app                      |      9 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> lagan                         |      9 | {bio}                                               | </span>
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<td class="diff-line-num new old_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> ngs-sdk                       |      9 | {bio-dev}                                           | </span>
</pre>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> psychopy                      |      9 | {psychology}                                        | </span>
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<td class="diff-line-num new_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> vtk-dicom                     |      9 | {imaging}                                           | </span>
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<td class="diff-line-num old_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> libdivsufsort                 |      8 | {bio-dev}                                           | </span>
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<td class="diff-line-num old_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> melting                       |      8 | {bio,cloud}                                         | </span>
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<td class="diff-line-num old_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> openslide                     |      8 | {imaging}                                           | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> orthanc-webviewer             |      8 | {imaging}                                           | </span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> plastimatch                   |      8 | {imaging}                                           | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> biosig4c++                    |      7 | {physics,imaging}                                   | </span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> dicompyler                    |      7 | {oncology}                                          | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> libminc                       |      7 | {imaging-dev}                                       | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> orthanc-dicomweb              |      7 | {imaging,covid-19}                                  | </span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> plastimatch                   |      7 | {imaging}                                           | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> stacks                        |      7 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> treeview                      |      7 | {bio-phylogeny,bio}                                 | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> biojava-live                  |      6 | {bio-dev}                                           | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> biomaj3-cli                   |      6 | {cloud}                                             | </span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> dicompyler                    |      6 | {oncology}                                          | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> ea-utils                      |      6 | {bio}                                               | </span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="plaintext"> king                          |      6 | {imaging,typesetting}                               | </span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext"> librg-utils-perl              |      6 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> orthanc-mysql                 |      6 | {imaging}                                           | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> paraclu                       |      6 | {cloud,bio}                                         | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> anfo                          |      5 | {bio,cloud}                                         | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -47,8 +45,9 @@ Last-Update: Thu, 16 Jul 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> biomaj3-daemon                |      5 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> fastlink                      |      5 | {cloud,bio}                                         | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> getdata                       |      5 | {bio}                                               | </span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> king                          |      5 | {imaging,typesetting}                               | </span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> librg-utils-perl              |      5 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> mlv-smile                     |      5 | {bio,cloud}                                         | </span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="plaintext"> ncbi-seg                      |      5 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> obitools                      |      5 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> orthanc-postgresql            |      5 | {imaging}                                           | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> phyutility                    |      5 | {bio,cloud}                                         | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -65,19 +64,16 @@ Last-Update: Thu, 16 Jul 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> mhap                          |      4 | {bio-ngs,bio}                                       | </span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> mipe                          |      4 | {cloud,bio}                                         | </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> mrs                           |      4 | {bio}                                               | </span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext"> ncbi-seg                      |      4 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> neobio                        |      4 | {cloud,bio}                                         | </span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> nutsqlite                     |      4 | {tools}                                             | </span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> piler                         |      4 | {bio}                                               | </span>
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="plaintext"> <span class="idiff left right">predictprotein                |      4 | {bio}     </span>                                          | </span>
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="plaintext"> <span class="idiff left right">qrisk2                        |      4 | {practice}</span>                                          | </span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> scythe                        |      4 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> spread-phy                    |      4 | {bio-phylogeny,bio}                                 | </span>
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<pre style="margin: 0;">-<span id="LC74" class="line" lang="plaintext"> squizz                        |      4 | {bio,cloud}                                         | </span>
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<pre style="margin: 0;">-<span id="LC75" class="line" lang="plaintext"> staden                        |      4 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> transtermhp                   |      4 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> alter-sequence-alignment      |      3 | {bio}                                               | </span>
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="plaintext"> ampliconnoise                 |      3 | {cloud,bio}                                         | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> bandage                       |      3 | {bio}                                               | </span>
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<pre style="margin: 0;">-<span id="LC80" class="line" lang="plaintext"> brig                          |      3 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext"> busco                         |      3 | {covid-19,bio}                                      | </span>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> daligner                      |      3 | {bio-ngs,bio}                                       | </span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> ecopcr                        |      3 | {bio}                                               | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -92,29 +88,31 @@ Last-Update: Thu, 16 Jul 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> microbegps                    |      3 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"> multiqc                       |      3 | {bio,covid-19}                                      | </span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> perm                          |      3 | {cloud,bio}                                         | </span>
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<pre style="margin: 0;">-<span id="LC95" class="line" lang="plaintext"> p<span class="idiff left right">lacnet       </span>                |      3 | {bio}                                               | </span>
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="plaintext"> p<span class="idiff left right">redictprotein</span>                |      3 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> proalign                      |      3 | {bio-phylogeny,bio}                                 | </span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> probabel                      |      3 | {cloud,bio}                                         | </span>
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<pre style="margin: 0;">-<span id="LC98" class="line" lang="plaintext"> qrisk2                        |      3 | {practice}                                          | </span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> rdp-classifier                |      3 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext"> relion                        |      3 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext"> runcircos-gui                 |      3 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext"> saint                         |      3 | {bio}                                               | </span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
103
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<td class="diff-line-num new_line" data-linenumber="98" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
98
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> salmon                        |      3 | {bio,covid-19}                                      | </span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
104
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<td class="diff-line-num new_line" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
99
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> seqmagick                     |      3 | {covid-19,bio}                                      | </span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="100" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
100
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC100" class="line" lang="plaintext"> squizz                        |      3 | {bio,cloud}                                         | </span>
</pre>
</td>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
101
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC101" class="line" lang="plaintext"> staden                        |      3 | {bio}                                               | </span>
</pre>
</td>
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<td class="diff-line-num old_line" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
105
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<td class="diff-line-num new_line" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
102
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> tnseq-transit                 |      3 | {covid-19,bio}                                      | </span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
106
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<td class="diff-line-num new_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
103
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> tracetuner                    |      3 | {bio}                                               | </span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
107
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<td class="diff-line-num new_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
104
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> tvc                           |      3 | {bio}                                               | </span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="plaintext"> ampliconnoise                 |      2 | {cloud,bio}                                         | </span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
108
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<td class="diff-line-num new_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
106
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext"> arden                         |      2 | {bio,cloud}                                         | </span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
109
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<td class="diff-line-num new_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
107
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> assemblytics                  |      2 | {bio}                                               | </span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
110
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<td class="diff-line-num new_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
108
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> baitfisher                    |      2 | {bio}                                               | </span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
111
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<td class="diff-line-num new_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
109
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext"> beast2-mcmc                   |      2 | {bio}                                               | </span>
</pre>
</td>
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<td class="diff-line-num old_line" data-linenumber="112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
112
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<td class="diff-line-num new_line" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
110
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="plaintext"> beast-mcmc                    |      2 | {bio-phylogeny,bio}                                 | </span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
113
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<td class="diff-line-num new_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
111
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="plaintext"> bio-rainbow                   |      2 | {bio}                                               | </span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="114" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
114
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<td class="diff-line-num new_line old" data-linenumber="112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC114" class="line" lang="plaintext"> biosig4c++                    |      2 | {physics,imaging-dev}                               | </span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
115
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<td class="diff-line-num new_line" data-linenumber="112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
112
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC112" class="line" lang="plaintext"> bio-tradis                    |      2 | {bio-dev,bio}                                       | </span>
</pre>
</td>
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<td class="diff-line-num old_line" data-linenumber="116" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
116
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<td class="diff-line-num new_line" data-linenumber="113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
113
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC113" class="line" lang="plaintext"> bitseq                        |      2 | {bio}                                               | </span>
</pre>
</td>
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<td class="diff-line-num old_line" data-linenumber="117" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
117
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<td class="diff-line-num new_line" data-linenumber="114" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
114
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="plaintext"> blasr                         |      2 | {bio,bio-ngs}                                       | </span>
</pre>
</td>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="118" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="plaintext"> brig                          |      2 | {bio}                                               | </span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="118" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
118
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<td class="diff-line-num new_line" data-linenumber="116" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
116
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="plaintext"> canu                          |      2 | {bio}                                               | </span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="119" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
119
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<td class="diff-line-num new_line" data-linenumber="117" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
117
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="plaintext"> centrifuge                    |      2 | {bio,covid-19}                                      | </span>
</pre>
</td>
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="plaintext"> clonalframeml                 |      2 | {bio,covid-19}                                      | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -143,6 +141,7 @@ Last-Update: Thu, 16 Jul 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="plaintext"> pbdagcon                      |      2 | {bio}                                               | </span>
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<td class="diff-line-num old_line" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="142" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext"> phast                         |      2 | {bio}                                               | </span>
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<td class="diff-line-num old_line" data-linenumber="145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="plaintext"> phybin                        |      2 | {bio}                                               | </span>
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<td class="diff-line-num new old_line" data-linenumber="146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="plaintext"> placnet                       |      2 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="plaintext"> prime-phylo                   |      2 | {bio,cloud}                                         | </span>
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="plaintext"> prottest                      |      2 | {bio-phylogeny,bio}                                 | </span>
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<td class="diff-line-num old_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="plaintext"> pscan-chip                    |      2 | {bio}                                               | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="188" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -188,7 +187,6 @@ Last-Update: Thu, 16 Jul 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="plaintext"> plasmidseeker                 |      1 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC188" class="line" lang="plaintext"> q2templates                   |      1 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC189" class="line" lang="plaintext"> rambo-k                       |      1 | {bio}                                               | </span>
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<pre style="margin: 0;">-<span id="LC191" class="line" lang="plaintext"> relion                        |      1 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC190" class="line" lang="plaintext"> seqan                         |      1 | {bio-dev}                                           | </span>
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<pre style="margin: 0;"> <span id="LC191" class="line" lang="plaintext"> sift                          |      1 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC192" class="line" lang="plaintext"> stringtie                     |      1 | {bio,covid-19}                                      | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="270" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -272,5 +270,5 @@ Last-Update: Thu, 16 Jul 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC270" class="line" lang="plaintext"> pycoqc                        |     -1 | {covid-19,bio}                                      | </span>
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<pre style="margin: 0;"> <span id="LC271" class="line" lang="plaintext"> shovill                       |     -1 | {bio,covid-19}                                      | </span>
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<pre style="margin: 0;"> <span id="LC272" class="line" lang="plaintext"> yanagiba                      |     -1 | {bio,covid-19}                                      | </span>
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<td class="diff-line-num new_line old" data-linenumber="273" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC275" class="line" lang="plaintext">(29<span class="idiff left right">9</span> rows)</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="276" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="273" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
273
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC273" class="line" lang="plaintext">(29<span class="idiff left right">7</span> rows)</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="276" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
276
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<td class="diff-line-num new_line" data-linenumber="274" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
274
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC274" class="line" lang="plaintext"></span></pre>
</td>
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<li id="2654e31016bcee9bbe05d462121706cc8ed368af">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/35aaf5aa763b8422a635f36590e0e1344f533ebd#2654e31016bcee9bbe05d462121706cc8ed368af"><strong>outdated_med-packages.txt</strong></a>
The diff for this file was not included because it is too large.
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