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<h3>
Michael R. Crusoe pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/salmon">Debian Med / salmon</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/-/commit/115b394f77fdddac637755b1983efb0da3e2cddb">115b394f</a></strong>
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<span>by Michael R. Crusoe</span>
<i>at 2020-07-16T12:43:13+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.3.0+ds1</pre>
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<h4>30 changed files:</h4>
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<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#34ffb03041dc818ba71da0518ec52a0134f543f8">
current_version.txt
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<li class="file-stats">
<a href="#9d4e8ab62832d7b298261aae1fe1123d28783525">
doc/source/conf.py
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<li class="file-stats">
<a href="#8ffde13df31f212345642ccfa4755f3bd99e7e61">
docker/Dockerfile
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<li class="file-stats">
<a href="#3cbc10c17d78796adbdc9a8a8b8702f83a02d41f">
docker/build_test.sh
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<li class="file-stats">
<a href="#2bc7c7c64784b968b1404d3f09805fe683f980b1">
include/AlevinOpts.hpp
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<li class="file-stats">
<a href="#5cef8fa5ec1ece7a48a7915ced5deaf811bf19f5">
include/AlignmentLibrary.hpp
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<li class="file-stats">
<a href="#2ac0e90145df8287bf8f2694a3e2af65d0939b0b">
include/AtomicMatrix.hpp
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<li class="file-stats">
<a href="#80185316fe3b1f661a84dc01d133b5fb610d6061">
include/BAMQueue.hpp
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<li class="file-stats">
<a href="#190d99cc5ab950958653ebc379ba8a35f8e86031">
include/BAMQueue.tpp
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<li class="file-stats">
<a href="#ba21e28a4a0fb90d1a8bc698ffc1d6360721d2ef">
include/CollapsedCellOptimizer.hpp
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<li class="file-stats">
<a href="#b520c211a6c8edb6997dae1a17e2684187d91e8a">
include/CollapsedEMOptimizer.hpp
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<li class="file-stats">
<a href="#c30173959eead2de523cc996d8c2bb852a427b62">
include/CollapsedGibbsSampler.hpp
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<li class="file-stats">
<a href="#54e7c89c31efd77245f0e28769a95f9f9065879e">
include/DistributionUtils.hpp
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<li class="file-stats">
<a href="#a3e07d2ed2be80b241300903096d45955b061bb5">
include/EMUtils.hpp
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<li class="file-stats">
<a href="#2f4c95e51d181930dcddc9dbaeac2063cd1c62d8">
include/FragmentLengthDistribution.hpp
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<li class="file-stats">
<a href="#96a6d349faec8965a43df7703931ac525f2a6234">
include/FragmentStartPositionDistribution.hpp
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<li class="file-stats">
<a href="#f05db237f9b821f31941b5ede8a2c432d8736b61">
include/GZipWriter.hpp
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<li class="file-stats">
<a href="#1cb3b42bfac5c65f32a988f2794fbda76a880ef5">
include/SBModel.hpp
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<li class="file-stats">
<a href="#b28e1098f756957ff90d12768200c4e9602817b4">
include/SalmonConfig.hpp
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<li class="file-stats">
<a href="#44e448f604f7e82906787f365f589a3ea4657ba9">
include/SalmonDefaults.hpp
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<li class="file-stats">
<a href="#169f7f7cc7108d2c0f64e35e7ee01f7912f6dd93">
include/SalmonMappingUtils.hpp
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<li class="file-stats">
<a href="#2eeada36706cad6f17cb60346f7d2f9f4b479a7b">
include/SalmonOpts.hpp
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<li class="file-stats">
<a href="#0c4db41611a51a682d0d085f02905ac18c219b88">
include/SalmonUtils.hpp
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<li class="file-stats">
<a href="#ce3a50cf35cf7f12a5dfa968fc323211ab21cf88">
include/Sampler.hpp
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<li class="file-stats">
<a href="#8ed491100d2189e665edcdee1d3d3c1bf51ac354">
include/SingleCellProtocols.hpp
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<li class="file-stats">
<a href="#97e1e60b1e2a6f10909728fcda203530154b719b">
include/Transcript.hpp
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<li class="file-stats">
<a href="#cb6751900ebd99d2bb035624ab11a04cd32156fc">
include/VersionChecker.hpp
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<li class="file-stats">
<a href="#5a53a6fc0714ed95b4a785c8147e19c8d21933c9">
<span class="new-file">
+
include/httplib.hpp
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<h5>The diff was not included because it is too large.</h5>
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