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<h3>
Rebecca N. Palmer pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/snakemake">Debian Med / snakemake</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/f9a2bf8302591c729b5c2b337b1345fb1ca66b53">f9a2bf83</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-07-14T22:35:30+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 5.20.1</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#da5bd69cc72d5ccfc2244e20835ef90782c893fe">
.github/workflows/docker-publish-release.yml
</a>
</li>
<li class="file-stats">
<a href="#5c5ee4afb3fab2334411b3025d137240676c72c3">
.github/workflows/docker-publish.yml
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</li>
<li class="file-stats">
<a href="#45267e3a9556cafa9cb7b61dab7a3b6659e73aad">
CHANGELOG.rst
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</li>
<li class="file-stats">
<a href="#9983a3122073938d03b572d4b73df73fe03efe7d">
<span class="new-file">
+
docs/_static/theme.css
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</li>
<li class="file-stats">
<a href="#254a2da7a740675e537439eb88e32083b9ea4771">
docs/conf.py
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</li>
<li class="file-stats">
<a href="#9617ea0d5d1a492cd381dd6bb688b8a5cbe6512b">
docs/getting_started/installation.rst
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<li class="file-stats">
<a href="#d0153cac95479af9bfb99b746b633bc8255bb53a">
docs/index.rst
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<li class="file-stats">
<a href="#3c7246c0b371cfd3a475428be04706178ca01f0f">
docs/project_info/faq.rst
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<li class="file-stats">
<a href="#d366205d7cd679ff6d4a61f70728e92537101763">
snakemake/__init__.py
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</li>
<li class="file-stats">
<a href="#5e16cbeea010f59dbef52f8950f4873c94f39c7e">
snakemake/_version.py
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<li class="file-stats">
<a href="#9821437dfb3fff8383b6066a2a3c7aa3f6712a32">
snakemake/dag.py
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<li class="file-stats">
<a href="#f15af42c37739d075863d61c80d393b9af0c346c">
snakemake/deployment/conda.py
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</li>
<li class="file-stats">
<a href="#f26ea241de6ff4cfc0be3675c4f2da7114bd889d">
snakemake/exceptions.py
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</li>
<li class="file-stats">
<a href="#e933119c7503fe1d48ce0b0d37492388705f5808">
snakemake/io.py
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</li>
<li class="file-stats">
<a href="#818384818c4671b8354b6eb98ee2bab61c015a74">
snakemake/jobs.py
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</li>
<li class="file-stats">
<a href="#cf3162da7007083ee58b15ad521ddafd75bb8508">
snakemake/linting/snakefiles.py
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</li>
<li class="file-stats">
<a href="#6c195c1be80e4ad60b55a5a06c27411c43bbc217">
snakemake/logging.py
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</li>
<li class="file-stats">
<a href="#0caece5b78593474cf4141623bb6db9daba0ee80">
snakemake/remote/FTP.py
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</li>
<li class="file-stats">
<a href="#32efab9f75b9ad5c278488fb1ef1355f809bf36a">
snakemake/remote/XRootD.py
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</li>
<li class="file-stats">
<a href="#66a73d9dd46eb8e71f0039a18d36dbd78aea7977">
snakemake/script.py
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</li>
<li class="file-stats">
<a href="#890eb9a72c661585e32094a5a93e483c1b1a8c82">
snakemake/shell.py
</a>
</li>
<li class="file-stats">
<a href="#cb9e107597e441fb1c0d61663359d9cf1dbfe04d">
snakemake/workflow.py
</a>
</li>
<li class="file-stats">
<a href="#42401b6f22a8f3a60029a96f30f8c36403d228c3">
<span class="new-file">
+
tests/test_github_issue456/Snakefile
</span>
</a>
</li>
<li class="file-stats">
<a href="#6e1c85fac66ff51e2712bf101bf8b4d9cc178d7c">
<span class="new-file">
+
tests/test_github_issue456/expected-results/test.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#499fbdd998a22750b4a5f7ad0dcd31966c6cdbb6">
<span class="new-file">
+
tests/test_github_issue456/references/gffs/test.gff
</span>
</a>
</li>
<li class="file-stats">
<a href="#6b2ab2a98e32fd00ffe974c417898c8a992ce396">
tests/test_io.py
</a>
</li>
<li class="file-stats">
<a href="#22c23996b0a375360129918186ba6d70b20616c9">
tests/test_kubernetes/README.md
</a>
</li>
<li class="file-stats">
<a href="#9e34090c3f9111232f4ad2e660fb96b97f9bdd8d">
tests/test_script/expected-results/test.html
</a>
</li>
<li class="file-stats">
<a href="#337a7cda9da90120b78d52460325cc437cec33f2">
tests/test_script/scripts/test.Rmd
</a>
</li>
<li class="file-stats">
<a href="#4113cd32e26a333e1f4d24979d29bd0b48a234b3">
tests/test_singularity/Snakefile
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
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