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<h3>
Michael R. Crusoe pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/staden-io-lib">Debian Med / staden-io-lib</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/staden-io-lib/-/commit/52c2de363f5cc0561da4e0268d8d2747e7b00369">52c2de36</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-07-16T12:07:48+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.14.13</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
</li>
<li class="file-stats">
<a href="#a2feb6ed0257c21c6672793ee2f94eaadc10c72c">
CHANGES
</a>
</li>
<li class="file-stats">
<a href="#d5b4de16d947214ec306bd57bed1bd23a939b5f9">
Makefile.am
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
</a>
</li>
<li class="file-stats">
<a href="#15de0b5fb20686a754356d40d4fc5c2755171e5c">
io_lib/Makefile.am
</a>
</li>
<li class="file-stats">
<a href="#3d9d885f631f4be1609616b97bfb2ab72725c71d">
io_lib/bam.c
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</li>
<li class="file-stats">
<a href="#7737e49d349fb9c3aa5d4677775dc27ca49f1a70">
io_lib/bam.h
</a>
</li>
<li class="file-stats">
<a href="#a8bd53327916f888f0a188d0ca0989cf8ec458a2">
io_lib/binning.c
</a>
</li>
<li class="file-stats">
<a href="#949405540681132437e8fdc365e10d0335a07237">
io_lib/cram_bambam.c
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</li>
<li class="file-stats">
<a href="#4bf685eb577867afcc2fe5e8c8161de44b3478fa">
<span class="new-file">
+
io_lib/cram_bambam.h
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</li>
<li class="file-stats">
<a href="#48f294610379d625010c1399d3cc087fdf1f52b2">
io_lib/cram_codecs.c
</a>
</li>
<li class="file-stats">
<a href="#adc02a7efa9c825229f8d9810423e92f43f32cfe">
io_lib/cram_codecs.h
</a>
</li>
<li class="file-stats">
<a href="#c090703a5158bebb5ea8d58c18d31131ee6faf2b">
io_lib/cram_decode.c
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</li>
<li class="file-stats">
<a href="#9f085f51a866bcff42573f546d65d13328bf53b3">
io_lib/cram_encode.c
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</li>
<li class="file-stats">
<a href="#c4a7d433c4e4ce8e8e91048aa3b8034647734814">
io_lib/cram_io.c
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</li>
<li class="file-stats">
<a href="#c46c859c8cce7917372fb4ad298397a3f211f986">
io_lib/cram_stats.c
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</li>
<li class="file-stats">
<a href="#993c12844aea06c8def1f6136a13cb3f15bc4a70">
io_lib/cram_structs.h
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</li>
<li class="file-stats">
<a href="#a0a3b77ea5fba30ec8958968466d587ee908361c">
io_lib/sam_header.h
</a>
</li>
<li class="file-stats">
<a href="#f0a1d7329dace0a0633b26f2e395ac1ac4c426ee">
io_lib/scram.h
</a>
</li>
<li class="file-stats">
<a href="#3541819545aeb53b75aa81c62dbd5812d1722387">
io_lib/string_alloc.c
</a>
</li>
<li class="file-stats">
<a href="#6dd7cc75337183705b7d2755a6d95c5e054ee58e">
io_lib/thread_pool.c
</a>
</li>
<li class="file-stats">
<a href="#0e66940f3495741d60f2a3f879af2ea861fbbefb">
<span class="new-file">
+
io_lib/version.h.in
</span>
</a>
</li>
<li class="file-stats">
<a href="#79a8cdf3012fb1784d3b1ba702d20f8e09936d01">
man/man1/scramble.1
</a>
</li>
<li class="file-stats">
<a href="#981a9e7a5ab3c1548355bba632d54cbfb5a51f5b">
progs/cram_dump.c
</a>
</li>
<li class="file-stats">
<a href="#a4d4ea0e3d7acdf1d295ef4f9a28f9db4956a71f">
progs/cram_filter.c
</a>
</li>
<li class="file-stats">
<a href="#5bc584428f323991b2b5cc7f2c14ced96f59ca23">
progs/cram_index.c
</a>
</li>
<li class="file-stats">
<a href="#5d0e9356c792c6027f90d023de1f2c184b1f6889">
progs/cram_size.c
</a>
</li>
<li class="file-stats">
<a href="#6560d542c6adad5c147dd964d5411a56e0e101bb">
progs/scram_flagstat.c
</a>
</li>
<li class="file-stats">
<a href="#f27ad2076163cd6831f8c2ab3629bc6abd01f540">
progs/scram_merge.c
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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