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<h3>
Rebecca N. Palmer pushed to branch master
at <a href="https://salsa.debian.org/med-team/snakemake">Debian Med / snakemake</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/f9a2bf8302591c729b5c2b337b1345fb1ca66b53">f9a2bf83</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-07-14T22:35:30+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 5.20.1</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/9f369dc95d2e5ba19fc3c9bf3734474d8fc936e0">9f369dc9</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-07-14T22:35:52+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/5.20.1'
Update to upstream version '5.20.1'
with Debian dir 9f1775cdf2e59554add639cfe4169a0744ea49ab</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/7c0d3cf056b9c083164bb948a9efd0ee32230026">7c0d3cf0</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-07-15T08:32:59+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh patch
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#da5bd69cc72d5ccfc2244e20835ef90782c893fe">
.github/workflows/docker-publish-release.yml
</a>
</li>
<li class="file-stats">
<a href="#5c5ee4afb3fab2334411b3025d137240676c72c3">
.github/workflows/docker-publish.yml
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</li>
<li class="file-stats">
<a href="#45267e3a9556cafa9cb7b61dab7a3b6659e73aad">
CHANGELOG.rst
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</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#3a60a3d8ad77c5d7b9f50f6d9e07887ec385a803">
debian/patches/local_javascript.patch
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<li class="file-stats">
<a href="#9983a3122073938d03b572d4b73df73fe03efe7d">
<span class="new-file">
+
docs/_static/theme.css
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<li class="file-stats">
<a href="#254a2da7a740675e537439eb88e32083b9ea4771">
docs/conf.py
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<li class="file-stats">
<a href="#9617ea0d5d1a492cd381dd6bb688b8a5cbe6512b">
docs/getting_started/installation.rst
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<li class="file-stats">
<a href="#d0153cac95479af9bfb99b746b633bc8255bb53a">
docs/index.rst
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<li class="file-stats">
<a href="#3c7246c0b371cfd3a475428be04706178ca01f0f">
docs/project_info/faq.rst
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<li class="file-stats">
<a href="#d366205d7cd679ff6d4a61f70728e92537101763">
snakemake/__init__.py
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<li class="file-stats">
<a href="#5e16cbeea010f59dbef52f8950f4873c94f39c7e">
snakemake/_version.py
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<li class="file-stats">
<a href="#9821437dfb3fff8383b6066a2a3c7aa3f6712a32">
snakemake/dag.py
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<li class="file-stats">
<a href="#f15af42c37739d075863d61c80d393b9af0c346c">
snakemake/deployment/conda.py
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<li class="file-stats">
<a href="#f26ea241de6ff4cfc0be3675c4f2da7114bd889d">
snakemake/exceptions.py
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<li class="file-stats">
<a href="#e933119c7503fe1d48ce0b0d37492388705f5808">
snakemake/io.py
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<li class="file-stats">
<a href="#818384818c4671b8354b6eb98ee2bab61c015a74">
snakemake/jobs.py
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<li class="file-stats">
<a href="#cf3162da7007083ee58b15ad521ddafd75bb8508">
snakemake/linting/snakefiles.py
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</li>
<li class="file-stats">
<a href="#6c195c1be80e4ad60b55a5a06c27411c43bbc217">
snakemake/logging.py
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<li class="file-stats">
<a href="#0caece5b78593474cf4141623bb6db9daba0ee80">
snakemake/remote/FTP.py
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<li class="file-stats">
<a href="#32efab9f75b9ad5c278488fb1ef1355f809bf36a">
snakemake/remote/XRootD.py
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<li class="file-stats">
<a href="#66a73d9dd46eb8e71f0039a18d36dbd78aea7977">
snakemake/script.py
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<li class="file-stats">
<a href="#890eb9a72c661585e32094a5a93e483c1b1a8c82">
snakemake/shell.py
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<li class="file-stats">
<a href="#cb9e107597e441fb1c0d61663359d9cf1dbfe04d">
snakemake/workflow.py
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<li class="file-stats">
<a href="#42401b6f22a8f3a60029a96f30f8c36403d228c3">
<span class="new-file">
+
tests/test_github_issue456/Snakefile
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<li class="file-stats">
<a href="#6e1c85fac66ff51e2712bf101bf8b4d9cc178d7c">
<span class="new-file">
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tests/test_github_issue456/expected-results/test.txt
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<li class="file-stats">
<a href="#499fbdd998a22750b4a5f7ad0dcd31966c6cdbb6">
<span class="new-file">
+
tests/test_github_issue456/references/gffs/test.gff
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</a>
</li>
<li class="file-stats">
<a href="#6b2ab2a98e32fd00ffe974c417898c8a992ce396">
tests/test_io.py
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<li class="file-stats">
<a href="#22c23996b0a375360129918186ba6d70b20616c9">
tests/test_kubernetes/README.md
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</li>
<li class="file-stats">
<a href="#9e34090c3f9111232f4ad2e660fb96b97f9bdd8d">
tests/test_script/expected-results/test.html
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</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
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