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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/staden-io-lib">Debian Med / staden-io-lib</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/staden-io-lib/-/commit/52c2de363f5cc0561da4e0268d8d2747e7b00369">52c2de36</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-07-16T12:07:48+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.14.13</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/staden-io-lib/-/commit/d56891b89296866426aae285f90c26e1a47ee169">d56891b8</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-07-16T12:07:48+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/staden-io-lib/-/commit/3c9fc24f0f4c93a6e54db09c4a3d0f216f55dd08">3c9fc24f</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-07-16T12:08:00+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.14.13'
Update to upstream version '1.14.13'
with Debian dir 35b70e5a34a01ad30bdaf84c2924f31edbce6d7e</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/staden-io-lib/-/commit/0dd4d51deab959d683527abbf41813367d62c9e2">0dd4d51d</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-07-16T12:08:00+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 13
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/staden-io-lib/-/commit/26e9ea129c57c17b8843ef787fac6287694f4da9">26e9ea12</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-07-16T12:10:35+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">s390x patch removed, fixed upstream.
Other patches refreshed.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/staden-io-lib/-/commit/dd69f37c93488013b6f4c646d716b14c44d2b3dd">dd69f37c</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-07-16T12:10:46+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Remove trailing whitespace in debian/changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/staden-io-lib/-/commit/31df3ce4c34455eb630fe88ad68edb1520f57274">31df3ce4</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-07-16T12:10:47+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/staden-io-lib/-/commit/aa13a6dfc2a4375c3891cd18b895e74fe027dac2">aa13a6df</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-07-16T12:43:11+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">silence warnings about skipped man pages
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/staden-io-lib/-/commit/f7b2157f6750a71873a382fdb7f2603e66786f6c">f7b2157f</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-07-16T12:50:34+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">release 1.14.13-1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/staden-io-lib/-/commit/496d0052f47cd81fc296de2a7f45e41316360d0d">496d0052</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-07-16T13:49:20+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Don't run dh_missing in for arch independent builds.
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
</li>
<li class="file-stats">
<a href="#a2feb6ed0257c21c6672793ee2f94eaadc10c72c">
CHANGES
</a>
</li>
<li class="file-stats">
<a href="#d5b4de16d947214ec306bd57bed1bd23a939b5f9">
Makefile.am
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#1823cfdb97f631de92d185f9a7ef6c1f58bc9147">
<span class="new-file">
+
debian/not-installed
</span>
</a>
</li>
<li class="file-stats">
<a href="#d938218a50fb9da3cc3674238ca55a7d5def5915">
debian/patches/pathmax.patch
</a>
</li>
<li class="file-stats">
<a href="#a5aef8ec630c561e4b87c63e8e386ded3be6bd6a">
<span class="deleted-file">
−
debian/patches/s390x.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#e4c19aed51618bf0c7ebd03189c67e422f84d4eb">
debian/patches/spelling
</a>
</li>
<li class="file-stats">
<a href="#918ce272ce78d364e11a56e0923b04518b26fcd8">
debian/patches/usedebianhtscodecs.patch
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<span class="new-file">
+
debian/salsa-ci.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#15de0b5fb20686a754356d40d4fc5c2755171e5c">
io_lib/Makefile.am
</a>
</li>
<li class="file-stats">
<a href="#3d9d885f631f4be1609616b97bfb2ab72725c71d">
io_lib/bam.c
</a>
</li>
<li class="file-stats">
<a href="#7737e49d349fb9c3aa5d4677775dc27ca49f1a70">
io_lib/bam.h
</a>
</li>
<li class="file-stats">
<a href="#a8bd53327916f888f0a188d0ca0989cf8ec458a2">
io_lib/binning.c
</a>
</li>
<li class="file-stats">
<a href="#949405540681132437e8fdc365e10d0335a07237">
io_lib/cram_bambam.c
</a>
</li>
<li class="file-stats">
<a href="#4bf685eb577867afcc2fe5e8c8161de44b3478fa">
<span class="new-file">
+
io_lib/cram_bambam.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#48f294610379d625010c1399d3cc087fdf1f52b2">
io_lib/cram_codecs.c
</a>
</li>
<li class="file-stats">
<a href="#adc02a7efa9c825229f8d9810423e92f43f32cfe">
io_lib/cram_codecs.h
</a>
</li>
<li class="file-stats">
<a href="#c090703a5158bebb5ea8d58c18d31131ee6faf2b">
io_lib/cram_decode.c
</a>
</li>
<li class="file-stats">
<a href="#9f085f51a866bcff42573f546d65d13328bf53b3">
io_lib/cram_encode.c
</a>
</li>
<li class="file-stats">
<a href="#c4a7d433c4e4ce8e8e91048aa3b8034647734814">
io_lib/cram_io.c
</a>
</li>
<li class="file-stats">
<a href="#c46c859c8cce7917372fb4ad298397a3f211f986">
io_lib/cram_stats.c
</a>
</li>
<li class="file-stats">
<a href="#993c12844aea06c8def1f6136a13cb3f15bc4a70">
io_lib/cram_structs.h
</a>
</li>
<li class="file-stats">
<a href="#a0a3b77ea5fba30ec8958968466d587ee908361c">
io_lib/sam_header.h
</a>
</li>
<li class="file-stats">
<a href="#f0a1d7329dace0a0633b26f2e395ac1ac4c426ee">
io_lib/scram.h
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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<p style="font-size: small; color: #777;">
—
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<a href="https://salsa.debian.org/med-team/staden-io-lib/-/compare/1fcaf81656f7ae2a03270fba0e5200c4c80d23e9...496d0052f47cd81fc296de2a7f45e41316360d0d">View it on GitLab</a>.
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