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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/06301692c4cbdc733886b0cb3f05d1752a9b0946">06301692</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-07-17T13:44:13+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/06301692c4cbdc733886b0cb3f05d1752a9b0946#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Fri, 17 Jul 2020 <span class="idiff left right">01:42:04</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Fri, 17 Jul 2020 <span class="idiff left right">13:42:03</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">1</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 8<span class="idiff left right">8</span> | {covid-19,imaging,practice} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> gdcm | 4<span class="idiff left right">6</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 4<span class="idiff left right">3</span> | {his,practice,covid-19,laboratory,imaging,oncology} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">2</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 8<span class="idiff left right">9</span> | {covid-19,imaging,practice} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> gdcm | 4<span class="idiff left right">7</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 4<span class="idiff left right">2</span> | {his,practice,covid-19,laboratory,imaging,oncology} | </span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> htsjdk | 31 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> dcm2niix | 2<span class="idiff left right">2</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> dicom3tools | 2<span class="idiff left right">2</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> dicomscope | 1<span class="idiff left right">9</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> gnumed-server | 1<span class="idiff left right">8</span> | {practice,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> dcm2niix | 2<span class="idiff left right">1</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> dicom3tools | 2<span class="idiff left right">1</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dicomscope | 1<span class="idiff left right">8</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> gnumed-server | 1<span class="idiff left right">7</span> | {practice,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> ngs-sdk | 15 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> gdcm | 1<span class="idiff left right">3</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> gdcm | 1<span class="idiff left right">4</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> insighttoolkit4 | 13 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> invesalius | 13 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> gdcm | 12 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> pixelmed | 12 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> invesalius | 12 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> pixelmed | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> jebl2 | 10 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> <span class="idiff left right">minc-tools | 10 | {imaging</span>} | </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> <span class="idiff left right">ngs-sdk | 10 | {bio-dev</span>} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> adun.app | 9 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> lagan | 9 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> <span class="idiff left right">ngs-sdk | 9 | {bio-dev</span>} | </span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> <span class="idiff left right">minc-tools | 9 | {imaging</span>} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> psychopy | 9 | {psychology} | </span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> vtk-dicom | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> libdivsufsort | 8 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> melting | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> openslide | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> orthanc-webviewer | 8 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"> plastimatch | 8 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext"> biosig4c++ | 7 | {physics,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> vtk-dicom | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> dicompyler | 7 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> libminc | 7 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> openslide | 7 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> orthanc-dicomweb | 7 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> plastimatch | 7 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> stacks | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> treeview | 7 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> biojava-live | 6 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> biomaj3-cli | 6 | {cloud} | </span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> biosig4c++ | 6 | {physics,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> ea-utils | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> obitools | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> orthanc-mysql | 6 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> paraclu | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> anfo | 5 | {bio,cloud} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -48,7 +49,6 @@ Last-Update: Fri, 17 Jul 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> king | 5 | {imaging,typesetting} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> librg-utils-perl | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> mlv-smile | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="plaintext"> obitools | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> orthanc-postgresql | 5 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> phyutility | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> pymia | 5 | {imaging-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -68,7 +68,6 @@ Last-Update: Fri, 17 Jul 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> neobio | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> nutsqlite | 4 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> piler | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="plaintext"> qrisk2 | 4 | {practice} | </span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> scythe | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> spread-phy | 4 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> transtermhp | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -85,6 +84,7 @@ Last-Update: Fri, 17 Jul 2020 01:42:04 +0000</td>
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84
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> ipig | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> libncl | 3 | {bio} | </span>
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86
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 3 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="plaintext"> libsbml | 3 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> microbegps | 3 | {bio} | </span>
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89
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"> multiqc | 3 | {bio,covid-19} | </span>
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90
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> perm | 3 | {cloud,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -131,12 +131,12 @@ Last-Update: Fri, 17 Jul 2020 01:42:04 +0000</td>
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131
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="plaintext"> lamarc | 2 | {bio} | </span>
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132
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<pre style="margin: 0;"> <span id="LC132" class="line" lang="plaintext"> libctapimkt | 2 | {practice} | </span>
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="plaintext"> libpal-java | 2 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC134" class="line" lang="plaintext"> libsbml | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"> maffilter | 2 | {bio} | </span>
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135
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> metaphlan2 | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> murasaki | 2 | {bio} | </span>
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137
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext"> ncbi-vdb | 2 | {bio-dev} | </span>
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138
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="plaintext"> openslide | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="plaintext"> oscar | 2 | {practice,tools,data} | </span>
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140
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="plaintext"> patman | 2 | {bio} | </span>
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141
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141
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="plaintext"> pbdagcon | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext"> phast | 2 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -181,7 +181,7 @@ Last-Update: Fri, 17 Jul 2020 01:42:04 +0000</td>
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181
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181
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="plaintext"> logol | 1 | {bio} | </span>
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182
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="plaintext"> ngs-sdk | 1 | {bio-dev} | </span>
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183
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<pre style="margin: 0;"> <span id="LC183" class="line" lang="plaintext"> opensurgsim | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC184" class="line" lang="plaintext"> <span class="idiff left right">oscar | 1 | {practice,tools,data}</span> | </span>
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184
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<pre style="margin: 0;">+<span id="LC184" class="line" lang="plaintext"> <span class="idiff left right">papyrus | 1 | {imaging-dev} </span> | </span>
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185
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<pre style="margin: 0;"> <span id="LC185" class="line" lang="plaintext"> pbcopper | 1 | {bio-dev} | </span>
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186
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186
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="plaintext"> phipack | 1 | {bio} | </span>
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187
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187
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="plaintext"> plasmidseeker | 1 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -229,12 +229,12 @@ Last-Update: Fri, 17 Jul 2020 01:42:04 +0000</td>
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229
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229
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="plaintext"> libmialm | 0 | {imaging-dev} | </span>
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230
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230
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="plaintext"> libmuscle | 0 | {bio-dev} | </span>
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231
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231
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<pre style="margin: 0;"> <span id="LC231" class="line" lang="plaintext"> libncl | 0 | {bio-dev} | </span>
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232
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<pre style="margin: 0;">-<span id="LC232" class="line" lang="plaintext"> libpll | 0 | {bio-dev} | </span>
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232
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<pre style="margin: 0;"> <span id="LC232" class="line" lang="plaintext"> libpsortb | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC233" class="line" lang="plaintext"> libqes | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="plaintext"> libseqlib | 0 | {bio-dev} | </span>
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235
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<pre style="margin: 0;"> <span id="LC235" class="line" lang="plaintext"> libstatgen | 0 | {bio-dev} | </span>
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237
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236
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<pre style="margin: 0;"> <span id="LC236" class="line" lang="plaintext"> libxdf | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC237" class="line" lang="plaintext"> lighter | 0 | {bio,covid-19} | </span>
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238
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<pre style="margin: 0;"> <span id="LC238" class="line" lang="plaintext"> metastudent-data | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC239" class="line" lang="plaintext"> metastudent-data-2 | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="plaintext"> miaviewit | 0 | {imaging-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="244" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -244,13 +244,12 @@ Last-Update: Fri, 17 Jul 2020 01:42:04 +0000</td>
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244
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="plaintext"> nanosv | 0 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="plaintext"> opencfu | 0 | {laboratory} | </span>
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="plaintext"> orthanc-imagej | 0 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC247" class="line" lang="plaintext"> papyrus | 0 | {imaging-dev} | </span>
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247
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<pre style="margin: 0;"> <span id="LC247" class="line" lang="plaintext"> parallel-fastq-dump | 0 | {covid-19} | </span>
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249
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248
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<pre style="margin: 0;"> <span id="LC248" class="line" lang="plaintext"> pbseqlib | 0 | {bio-dev} | </span>
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<td class="diff-line-num old_line" data-linenumber="250" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
250
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249
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="plaintext"> pilercr | 0 | {bio} | </span>
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251
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250
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<pre style="margin: 0;"> <span id="LC250" class="line" lang="plaintext"> quicktree | 0 | {bio,covid-19,bio-phylogeny} | </span>
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252
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<pre style="margin: 0;">-<span id="LC252" class="line" lang="plaintext"> relion | 0 | {bio-dev} | </span>
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253
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251
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<pre style="margin: 0;"> <span id="LC251" class="line" lang="plaintext"> relion | 0 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC252" class="line" lang="plaintext"> relion | 0 | {bio-dev} | </span>
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254
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<pre style="margin: 0;"> <span id="LC253" class="line" lang="plaintext"> sambamba | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC254" class="line" lang="plaintext"> sbmltoolbox | 0 | {bio-dev} | </span>
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<td class="diff-line-num old_line" data-linenumber="256" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC255" class="line" lang="plaintext"> seq-gen | 0 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="263" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -263,6 +262,7 @@ Last-Update: Fri, 17 Jul 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC262" class="line" lang="plaintext"> tophat-recondition | 0 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC263" class="line" lang="plaintext"> varna | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC264" class="line" lang="plaintext"> varscan | 0 | {covid-19,bio} | </span>
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<pre style="margin: 0;">+<span id="LC265" class="line" lang="plaintext"> vienna-rna | 0 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC266" class="line" lang="plaintext"> vtk-dicom | 0 | {imaging-dev} | </span>
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<td class="diff-line-num old_line" data-linenumber="267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC267" class="line" lang="plaintext"> wtdbg2 | 0 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC268" class="line" lang="plaintext"> bustools | -1 | {bio,covid-19} | </span>
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