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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/vcfanno">Debian Med / vcfanno</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/vcfanno/-/commit/10302f9a4f0706518b1267e5ac1191e53b423219">10302f9a</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-07-17T19:24:15+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.3.2+ds</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vcfanno/-/commit/45cc854dbb1922af87ecb00bc442e7196c4d595a">45cc854d</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-07-17T19:24:16+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/0.3.2+ds'
Update to upstream version '0.3.2+ds'
with Debian dir 8071e8c8a2c504ec26c706efc6364ada15224f0a</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vcfanno/-/commit/e678a551b0740aaae21a5349159ebd348bdaf8a6">e678a551</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-07-17T19:24:41+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Repack to remove generated files
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vcfanno/-/commit/fafa59bdc1ddcd5c4d7478a01bba7bb11ad859a5">fafa59bd</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-07-18T01:19:16+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix patch name and description
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vcfanno/-/commit/7d5bcfcd2f57ad21ebf5d368ccc995fa83fef503">7d5bcfcd</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-07-18T02:41:12+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update Build-Deps, add extra binary "vcfanno-examples" for example+test data
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vcfanno/-/commit/6570cf77bdab70b6de3defb0c1bb00166f1f2a0f">6570cf77</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-07-18T02:42:12+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add missing source: ex.sam for ex.bam
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vcfanno/-/commit/f4998fd89884168ecdc5b8c07ba7478077750b43">f4998fd8</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-07-18T02:42:42+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add install files for both binaries
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vcfanno/-/commit/3512fbad57b05d50efc0b59237eb48465f737167">3512fbad</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-07-18T02:43:21+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Regenerate removed files while repacking
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vcfanno/-/commit/199741cc61fada0e121c6cb8b921f3b3529a27f0">199741cc</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-07-18T02:43:52+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use repacked source version
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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<li class="file-stats">
<a href="#6f9e08e10c21da69296ed30303cbb4a420db679d">
<span class="new-file">
+
debian/missing-sources/ex.sam
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#97c5522d14d15cffb6ae41aa7e0d882e93606660">
debian/patches/shared/shared.go
→
debian/patches/use-archive-xopen.patch
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#c9be55b34d5aff561f9a9608d673a8b7046b584a">
<span class="new-file">
+
debian/vcfanno-examples.docs
</span>
</a>
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<li class="file-stats">
<a href="#1217198dd0ad6a9ef35d9721e9ba6b5fbbd6c9be">
<span class="new-file">
+
debian/vcfanno.install
</span>
</a>
</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
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<li class="file-stats">
<a href="#6e0bec0ada8e9c765da6de572b7a526a5b513825">
<span class="deleted-file">
−
docs/examples/gff_sv/genes.gff3.gz.tbi
</span>
</a>
</li>
<li class="file-stats">
<a href="#c00630622e1e057d21fab6a525de36aeb37fffd8">
<span class="deleted-file">
−
example/ex.bam
</span>
</a>
</li>
<li class="file-stats">
<a href="#ceca196396aeec311ba8163ed4c7876e732add0a">
<span class="deleted-file">
−
example/ex.bam.bai
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</a>
</li>
<li class="file-stats">
<a href="#e200d084a295144227ea8195bd3eb280bcf2a2df">
<span class="deleted-file">
−
example/exac.vcf.gz.tbi
</span>
</a>
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<a href="#cb0fd7028f0a742f2a549723463c055b620f44bd">
<span class="deleted-file">
−
example/fitcons.bed.gz.tbi
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<li class="file-stats">
<a href="#c8c1589186e2ba2c5fa4106fcce98642fb10f433">
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tests/astar/astar.anno.vcf.gz.tbi
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</a>
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<li class="file-stats">
<a href="#cb8d6b7915aef7fd619411dc395192a377b29aa3">
<span class="deleted-file">
−
tests/by_alt_float/annotation.tsv.gz.tbi
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<li class="file-stats">
<a href="#098427f6fd578a2fba17962b6c0c7fb0968e7f04">
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tests/citest/at/testexon.bed.gz.tbi
</span>
</a>
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<li class="file-stats">
<a href="#52b5d58dc55111c55b6ef24de1d78797ea03f01f">
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tests/citest/dummyexons.bed.gz.tbi
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<a href="#e8bf93975c9e06044efd7b76b68e9b8b7e218a32">
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tests/data/multiple-alts.vcf.gz.tbi
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tests/data/number.vcf.gz.tbi
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tests/dbnsfp/dbNSFP_ex.txt.gz.tbi
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tests/dbnsfp/dbNSFP_example.txt.gz.tbi
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tests/id-test/cosmic.small.vcf.gz.tbi
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tests/id-test/dbsnp.small.vcf.gz.tbi
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tests/id-test/small.vcf.gz.tbi
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tests/overwrite-multiple-alts/a/whole.vcf.gz.tbi
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tests/overwrite-multiple-alts/b/cadd_indels.vcf.gz.tbi
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<h5>The diff was not included because it is too large.</h5>
</div>
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