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<h3>
Nilesh Patra pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/vcfanno">Debian Med / vcfanno</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/vcfanno/-/commit/10302f9a4f0706518b1267e5ac1191e53b423219">10302f9a</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-07-17T19:24:15+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.3.2+ds</pre>
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<h4>24 changed files:</h4>
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docs/examples/gff_sv/genes.gff3.gz.tbi
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example/ex.bam
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example/ex.bam.bai
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example/exac.vcf.gz.tbi
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example/fitcons.bed.gz.tbi
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tests/astar/astar.anno.vcf.gz.tbi
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tests/by_alt_float/annotation.tsv.gz.tbi
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tests/citest/at/testexon.bed.gz.tbi
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tests/citest/dummyexons.bed.gz.tbi
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tests/data/multiple-alts.vcf.gz.tbi
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tests/data/number.vcf.gz.tbi
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tests/dbnsfp/dbNSFP_ex.txt.gz.tbi
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tests/dbnsfp/dbNSFP_example.txt.gz.tbi
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tests/id-test/cosmic.small.vcf.gz.tbi
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tests/id-test/dbsnp.small.vcf.gz.tbi
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tests/id-test/small.vcf.gz.tbi
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tests/multiple-alts/ma-db.vcf.gz.tbi
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tests/notbgz/gno.vcf.gz.tbi
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tests/overwrite-multiple-alts/a/whole.vcf.gz.tbi
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tests/overwrite-multiple-alts/b/whole_genome_snv_slice.vcf.gz.tbi
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tests/ref-alt-test/tmp_annotation.txt.gz.tbi
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tests/ref-alt-test/tmp_calls.vcf.gz.tbi
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tests/testVA/test-gnomad.vcf.gz.tbi
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<h4>Changes:</h4>
<li id="6e0bec0ada8e9c765da6de572b7a526a5b513825">
<a href="https://salsa.debian.org/med-team/vcfanno/-/commit/10302f9a4f0706518b1267e5ac1191e53b423219#6e0bec0ada8e9c765da6de572b7a526a5b513825"><strong>docs/examples/gff_sv/genes.gff3.gz.tbi</strong>
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<li id="c00630622e1e057d21fab6a525de36aeb37fffd8">
<a href="https://salsa.debian.org/med-team/vcfanno/-/commit/10302f9a4f0706518b1267e5ac1191e53b423219#c00630622e1e057d21fab6a525de36aeb37fffd8"><strong>example/ex.bam</strong>
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<li id="ceca196396aeec311ba8163ed4c7876e732add0a">
<a href="https://salsa.debian.org/med-team/vcfanno/-/commit/10302f9a4f0706518b1267e5ac1191e53b423219#ceca196396aeec311ba8163ed4c7876e732add0a"><strong>example/ex.bam.bai</strong>
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<li id="e200d084a295144227ea8195bd3eb280bcf2a2df">
<a href="https://salsa.debian.org/med-team/vcfanno/-/commit/10302f9a4f0706518b1267e5ac1191e53b423219#e200d084a295144227ea8195bd3eb280bcf2a2df"><strong>example/exac.vcf.gz.tbi</strong>
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<li id="cb0fd7028f0a742f2a549723463c055b620f44bd">
<a href="https://salsa.debian.org/med-team/vcfanno/-/commit/10302f9a4f0706518b1267e5ac1191e53b423219#cb0fd7028f0a742f2a549723463c055b620f44bd"><strong>example/fitcons.bed.gz.tbi</strong>
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<li id="c8c1589186e2ba2c5fa4106fcce98642fb10f433">
<a href="https://salsa.debian.org/med-team/vcfanno/-/commit/10302f9a4f0706518b1267e5ac1191e53b423219#c8c1589186e2ba2c5fa4106fcce98642fb10f433"><strong>tests/astar/astar.anno.vcf.gz.tbi</strong>
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<li id="cb8d6b7915aef7fd619411dc395192a377b29aa3">
<a href="https://salsa.debian.org/med-team/vcfanno/-/commit/10302f9a4f0706518b1267e5ac1191e53b423219#cb8d6b7915aef7fd619411dc395192a377b29aa3"><strong>tests/by_alt_float/annotation.tsv.gz.tbi</strong>
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<li id="52b5d58dc55111c55b6ef24de1d78797ea03f01f">
<a href="https://salsa.debian.org/med-team/vcfanno/-/commit/10302f9a4f0706518b1267e5ac1191e53b423219#52b5d58dc55111c55b6ef24de1d78797ea03f01f"><strong>tests/citest/dummyexons.bed.gz.tbi</strong>
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<li id="e8bf93975c9e06044efd7b76b68e9b8b7e218a32">
<a href="https://salsa.debian.org/med-team/vcfanno/-/commit/10302f9a4f0706518b1267e5ac1191e53b423219#e8bf93975c9e06044efd7b76b68e9b8b7e218a32"><strong>tests/data/multiple-alts.vcf.gz.tbi</strong>
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<li id="e9fe4a84722a4c036ad88abaac7eb19a13e593ca">
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<li id="1dda755ffb52aac003b2bf7f62bbbdb067eaffc4">
<a href="https://salsa.debian.org/med-team/vcfanno/-/commit/10302f9a4f0706518b1267e5ac1191e53b423219#1dda755ffb52aac003b2bf7f62bbbdb067eaffc4"><strong>tests/dbnsfp/dbNSFP_ex.txt.gz.tbi</strong>
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<a href="https://salsa.debian.org/med-team/vcfanno/-/commit/10302f9a4f0706518b1267e5ac1191e53b423219#4f7cb94226df6bb0545e63b9ca4fd904e7c9a2bd"><strong>tests/dbnsfp/dbNSFP_example.txt.gz.tbi</strong>
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<li id="fb88b6c6b4e9a2a0f13d56d868f76bac293f6d9e">
<a href="https://salsa.debian.org/med-team/vcfanno/-/commit/10302f9a4f0706518b1267e5ac1191e53b423219#fb88b6c6b4e9a2a0f13d56d868f76bac293f6d9e"><strong>tests/id-test/cosmic.small.vcf.gz.tbi</strong>
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<li id="626624543c0c33fbd0267e86084befe632aaa586">
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<li id="b7009b50b6f25031d097569586a6aed929a3f1d4">
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<li id="384a4682ca51fbef1f80fa1f4bbd5f9b6b96b55a">
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<li id="c9e2151412b550ec476fccef8c30cc310ad34098">
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