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<h3>
Ole Streicher pushed to branch upstream
at <a href="https://salsa.debian.org/python-team/modules/tifffile">Debian Python Team / DPMT / tifffile</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/python-team/modules/tifffile/-/commit/2a5bc8b5fe528ce2d93f5d400258cbe8f2088e3a">2a5bc8b5</a></strong>
<div>
<span>by Ole Streicher</span>
<i>at 2020-07-18T10:31:29+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 20200717</pre>
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<h4>8 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#4990be809a537bf86e4be2fe2e8251c83d8bd129">
CHANGES.rst
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</li>
<li class="file-stats">
<a href="#7d26833a43d8865f6d9679068f6f9ee7d6e13dcf">
PKG-INFO
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<li class="file-stats">
<a href="#561b88e19de321ca62c7590bbb350765fb110905">
README.rst
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<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
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<li class="file-stats">
<a href="#0e68eb77c1fac130dbc2b1470ebea5146df3de0b">
tests/test_tifffile.py
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<li class="file-stats">
<a href="#624d16e4d51d3d7766973c48f57be57a653d8843">
tifffile.egg-info/PKG-INFO
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<li class="file-stats">
<a href="#6000dbe87c32bc435db544e8382e5f5b92e11e77">
tifffile.egg-info/requires.txt
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<li class="file-stats">
<a href="#0897a6ad59d4e84cc745635b88c27baf0a78bd92">
tifffile/tifffile.py
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</ul>
<h4>Changes:</h4>
<li id="4990be809a537bf86e4be2fe2e8251c83d8bd129">
<a href="https://salsa.debian.org/python-team/modules/tifffile/-/commit/2a5bc8b5fe528ce2d93f5d400258cbe8f2088e3a#4990be809a537bf86e4be2fe2e8251c83d8bd129"><strong>CHANGES.rst</strong></a>
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<td class="diff-line-num new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Revisions</span>
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<td class="diff-line-num new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">---------</span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">2020.7.17</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> Pass 3022 tests.</span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> Initial support for writing OME-TIFF (WIP).</span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> Return samples as separate dimension in OME series (breaking).</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> Fix modulo dimensions for multiple OME series.</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> Fix some test errors on big endian systems (#18).</span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> Fix BytesWarning.</span>
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<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> Allow to pass TIFF.PREDICTOR values to TiffWriter.save.</span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">2020.7.4</span>
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> Deprecate support for Python 3.6 (NEP 29).</span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> Move pyramidal subresolution series to TiffPageSeries.levels (breaking).</span>
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> Add parser for SVS, SCN, NDPI, and QPI pyramidal series.</span>
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> Read single-file OME-TIFF pyramids.</span>
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> Read NDPI files > 4 GB (#15).</span>
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> Include SubIFDs in generic series.</span>
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<td class="diff-line-num new new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> Preliminary support for writing packed integer arrays (#11, WIP).</span>
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> Read more LSM info subrecords.</span>
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<td class="diff-line-num new new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> Fix missing ReferenceBlackWhite tag for YCbCr photometrics.</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> Fix reading lossless JPEG compressed DNG files.</span>
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3
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22
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">2020.6.3</span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> Pass 2908 tests.</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> Support os.PathLike file names (#9).</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">2020.5.30</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> Re-add pure Python PackBits decoder.</span>
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<a href="https://salsa.debian.org/python-team/modules/tifffile/-/commit/2a5bc8b5fe528ce2d93f5d400258cbe8f2088e3a#7d26833a43d8865f6d9679068f6f9ee7d6e13dcf"><strong>PKG-INFO</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">Metadata</span><span class="p">-</span><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">2.1</span></span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="mosel"><span class="n" style="color: #333;">Name</span><span class="p">:</span> <span class="n" style="color: #333;">tifffile</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="mosel"><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">2020.<span class="idiff left right">6.3</span></span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="mosel"><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">2020.<span class="idiff left right">7.17</span></span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="mosel"><span class="n" style="color: #333;">Summary</span><span class="p">:</span> <span class="n" style="color: #333;">Read</span> <span class="k" style="font-weight: 600;">and</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">TIFF</span><span class="p">(</span><span class="n" style="color: #333;">r</span><span class="p">)</span> <span class="n" style="color: #333;">files</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="mosel"><span class="n" style="color: #333;">Home</span><span class="p">-</span><span class="n" style="color: #333;">page</span><span class="p">:</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">lfd</span><span class="p">.</span><span class="n" style="color: #333;">uci</span><span class="p">.</span><span class="n" style="color: #333;">edu</span><span class="p">/~</span><span class="n" style="color: #333;">gohlke</span><span class="p">/</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="mosel"><span class="n" style="color: #333;">Author</span><span class="p">:</span> <span class="n" style="color: #333;">Christoph</span> <span class="n" style="color: #333;">Gohlke</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -18,10 +18,11 @@ Description: Read and write TIFF(r) files</td>
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18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="mosel"> </span>
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19
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<td class="diff-line-num new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="mosel"> <span class="n" style="color: #333;">Image</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="nb" style="color: #0086b3;">read</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">TIFF</span><span class="p">,</span> <span class="n" style="color: #333;">BigTIFF</span><span class="p">,</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span><span class="p">,</span> <span class="n" style="color: #333;">STK</span><span class="p">,</span> <span class="n" style="color: #333;">LSM</span><span class="p">,</span> <span class="n" style="color: #333;">SGI</span><span class="p">,</span></span>
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20
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="mosel"> <span class="n" style="color: #333;">NIHImage</span><span class="p">,</span> <span class="n" style="color: #333;">ImageJ</span><span class="p">,</span> <span class="n" style="color: #333;">MicroManager</span><span class="p">,</span> <span class="n" style="color: #333;">FluoView</span><span class="p">,</span> <span class="n" style="color: #333;">ScanImage</span><span class="p">,</span> <span class="n" style="color: #333;">SEQ</span><span class="p">,</span> <span class="n" style="color: #333;">GEL</span><span class="p">,</span> <span class="n" style="color: #333;">SVS</span><span class="p">,</span> <span class="n" style="color: #333;">SCN</span><span class="p">,</span> <span class="n" style="color: #333;">SIS</span><span class="p">,</span></span>
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21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="mosel"> <span class="n" style="color: #333;">ZIF</span><span class="p"><span class="idiff left">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">QPTIFF</span></span><span class="p">,</span> <span class="n" style="color: #333;">NDPI</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">GeoTIFF</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="mosel"> <span class="n" style="color: #333;">ZIF</span><span class="idiff left"> </span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">Zoomable</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">Image</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">File</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">Format</span></span><span class="p"><span class="idiff">),</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">QPTIFF</span></span><span class="idiff"> </span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">QPI</span></span><span class="p"><span class="idiff right">)</span>,</span> <span class="n" style="color: #333;">NDPI</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">GeoTIFF</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="mosel"> </span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="mosel"> <span class="n" style="color: #333;">Numpy</span> <span class="n" style="color: #333;">arrays</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">written</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">TIFF</span><span class="p">,</span> <span class="n" style="color: #333;">BigTIFF</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">ImageJ</span> <span class="n" style="color: #333;">hyperstack</span> <span class="n" style="color: #333;">compatible</span></span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="mosel"> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">page</span><span class="p">,</span> <span class="n" style="color: #333;">memory</span><span class="p">-</span><span class="n" style="color: #333;">mappable</span><span class="p">,</span> <span class="n" style="color: #333;">tiled</span><span class="p">,</span> <span class="n" style="color: #333;">predicted</span><span class="p">,</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">form</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="mosel"> <span class="n" style="color: #333;">Numpy</span> <span class="n" style="color: #333;">arrays</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">written</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">TIFF</span><span class="p">,</span> <span class="n" style="color: #333;">BigTIFF</span><span class="p">,</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">ImageJ</span> <span class="n" style="color: #333;">hyperstack</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="mosel"> <span class="n" style="color: #333;">compatible</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">page</span><span class="p">,</span> <span class="n" style="color: #333;">memory</span><span class="p">-</span><span class="n" style="color: #333;">mappable</span><span class="p">,</span> <span class="n" style="color: #333;">tiled</span><span class="p">,</span> <span class="n" style="color: #333;">predicted</span><span class="p">,</span> <span class="k" style="font-weight: 600;">or</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="mosel"> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">form</span><span class="p">.</span></span>
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25
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26
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="mosel"> </span>
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26
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<td class="diff-line-num new_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
27
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="mosel"> <span class="n" style="color: #333;">A</span> <span class="n" style="color: #333;">subset</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">specification</span> <span class="n" style="color: #333;">is</span> <span class="n" style="color: #333;">supported</span><span class="p">,</span> <span class="n" style="color: #333;">mainly</span> <span class="n" style="color: #333;">uncompressed</span> <span class="k" style="font-weight: 600;">and</span></span>
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27
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<td class="diff-line-num new_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="mosel"> <span class="n" style="color: #333;">losslessly</span> <span class="n" style="color: #333;">compressed</span> <span class="m" style="color: #099;">8</span><span class="p">,</span> <span class="m" style="color: #099;">16</span><span class="p">,</span> <span class="m" style="color: #099;">32</span> <span class="k" style="font-weight: 600;">and</span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="k" style="font-weight: 600;">integer</span><span class="p">,</span> <span class="m" style="color: #099;">16</span><span class="p">,</span> <span class="m" style="color: #099;">32</span> <span class="k" style="font-weight: 600;">and</span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">float</span><span class="p">,</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -36,7 +37,7 @@ Description: Read and write TIFF(r) files</td>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="mosel"> <span class="n" style="color: #333;">extensions</span> <span class="n" style="color: #333;">defined</span> <span class="n" style="color: #333;">by</span> <span class="n" style="color: #333;">Molecular</span> <span class="n" style="color: #333;">Devices</span> <span class="p">(</span><span class="n" style="color: #333;">Universal</span> <span class="n" style="color: #333;">Imaging</span> <span class="n" style="color: #333;">Corporation</span><span class="p">),</span></span>
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37
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38
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="mosel"> <span class="n" style="color: #333;">Carl</span> <span class="n" style="color: #333;">Zeiss</span> <span class="n" style="color: #333;">MicroImaging</span><span class="p">,</span> <span class="n" style="color: #333;">Olympus</span><span class="p">,</span> <span class="n" style="color: #333;">Silicon</span> <span class="n" style="color: #333;">Graphics</span> <span class="n" style="color: #333;">International</span><span class="p">,</span></span>
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38
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39
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="mosel"> <span class="n" style="color: #333;">Media</span> <span class="n" style="color: #333;">Cybernetics</span><span class="p">,</span> <span class="n" style="color: #333;">Molecular</span> <span class="n" style="color: #333;">Dynamics</span><span class="p">,</span> <span class="n" style="color: #333;">PerkinElmer</span><span class="p">,</span> <span class="n" style="color: #333;">Hamamatsu</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">the</span></span>
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39
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<td class="diff-line-num new_line old" data-linenumber="40" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="mosel"> <span class="n" style="color: #333;">Open</span> <span class="n" style="color: #333;">Microscopy</span> <span class="n" style="color: #333;">Environment</span> <span class="n" style="color: #333;">consortium</span> <span class="n" style="color: #333;">respectively</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="mosel"> <span class="n" style="color: #333;">Open</span> <span class="n" style="color: #333;">Microscopy</span> <span class="n" style="color: #333;">Environment</span> <span class="n" style="color: #333;">consortium</span><span class="p"><span class="idiff left right">,</span></span> <span class="n" style="color: #333;">respectively</span><span class="p">.</span></span>
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41
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="mosel"> </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="mosel"> <span class="n" style="color: #333;">For</span> <span class="nf" style="color: #900; font-weight: 600;">command</span> <span class="n" style="color: #333;">line</span> <span class="n" style="color: #333;">usage</span> <span class="nf" style="color: #900; font-weight: 600;">run</span> <span class="p">``</span><span class="n" style="color: #333;">python</span> <span class="p">-</span><span class="n" style="color: #333;">m</span> <span class="n" style="color: #333;">tifffile</span> <span class="p">--</span><span class="n" style="color: #333;">help</span><span class="p">``</span></span>
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43
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="mosel"> </span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="49" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -48,23 +49,44 @@ Description: Read and write TIFF(r) files</td>
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49
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="mosel"> </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="mosel"> <span class="p">:</span><span class="n" style="color: #333;">License</span><span class="p">:</span> <span class="n" style="color: #333;">BSD</span> <span class="m" style="color: #099;">3</span><span class="p">-</span><span class="n" style="color: #333;">Clause</span></span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="mosel"> </span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="mosel"> <span class="p">:</span><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">2020.<span class="idiff left right">6.3</span></span></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="mosel"> <span class="p">:</span><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">2020.<span class="idiff left right">7.17</span></span></span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="mosel"> </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Requirements</span></span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="mosel"> <span class="p">------------</span></span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="mosel"> <span class="n" style="color: #333;">This</span> <span class="n" style="color: #333;">release</span> <span class="n" style="color: #333;">has</span> <span class="n" style="color: #333;">been</span> <span class="n" style="color: #333;">tested</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">following</span> <span class="k" style="font-weight: 600;">requirements</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">dependencies</span></span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="mosel"> <span class="p">(</span><span class="n" style="color: #333;">other</span> <span class="n" style="color: #333;">versions</span> <span class="n" style="color: #333;">may</span> <span class="n" style="color: #333;">work</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="mosel"> </span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">CPython</span> <span class="m" style="color: #099;">3.<span class="idiff left">6.8</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">3.7.7</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff right">3.8.3</span></span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">python</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Numpy</span> <span class="m" style="color: #099;">1.1<span class="idiff left">6.6</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">1.18.4</span></span><span class="idiff"> </span><span class="p"><span class="idiff"><</span></span><span class="n" style="color: #333;"><span class="idiff">https</span></span><span class="p"><span class="idiff">://</span></span><span class="n" style="color: #333;"><span class="idiff">www</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">numpy</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff right">org</span></span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">CPython</span> <span class="m" style="color: #099;">3.<span class="idiff left">7.8</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">3.8.4</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">3.9.0</span></span><span class="n" style="color: #333;"><span class="idiff right">b4</span></span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">python</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Numpy</span> <span class="m" style="color: #099;">1.1<span class="idiff left">8.5</span></span><span class="idiff"> </span><span class="p"><span class="idiff"><</span></span><span class="n" style="color: #333;"><span class="idiff">https</span></span><span class="p"><span class="idiff">://</span></span><span class="n" style="color: #333;"><span class="idiff">pypi</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">org</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">project</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">numpy</span></span><span class="p"><span class="idiff right">/</span>>`</span><span class="n" style="color: #333;">_</span></span>
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61
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Imagecodecs</span> <span class="m" style="color: #099;">2020.5.30</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">imagecodecs</span><span class="p">/>`</span><span class="n" style="color: #333;">_</span></span>
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<td class="diff-line-num new_line" data-linenumber="62" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="mosel"> <span class="p">(</span><span class="n" style="color: #333;">required</span> <span class="n" style="color: #333;">only</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">encoding</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">decoding</span> <span class="n" style="color: #333;">LZW</span><span class="p">,</span> <span class="n" style="color: #333;">JPEG</span><span class="p">,</span> <span class="n" style="color: #333;">etc</span><span class="p">.)</span></span>
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62
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Matplotlib</span> <span class="m" style="color: #099;">3.1</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">matplotlib</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">>`</span><span class="n" style="color: #333;">_</span> <span class="p">(</span><span class="n" style="color: #333;">required</span> <span class="n" style="color: #333;">only</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">plotting</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Matplotlib</span> <span class="m" style="color: #099;">3.2.2</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">matplotlib</span><span class="p">/>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="mosel"> <span class="p">(</span><span class="n" style="color: #333;">required</span> <span class="n" style="color: #333;">only</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">plotting</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Lxml</span> <span class="m" style="color: #099;">4.5.2</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">github</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">lxml</span><span class="p">/</span><span class="n" style="color: #333;">lxml</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="mosel"> <span class="p">(</span><span class="n" style="color: #333;">required</span> <span class="n" style="color: #333;">only</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">validating</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">printing</span> <span class="n" style="color: #333;">XML</span><span class="p">)</span></span>
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63
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67
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="mosel"> </span>
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64
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<td class="diff-line-num new_line" data-linenumber="68" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
68
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="mosel"> <span class="n" style="color: #333;">Revisions</span></span>
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65
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<td class="diff-line-num new_line" data-linenumber="69" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
69
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="mosel"> <span class="p">---------</span></span>
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<td class="diff-line-num new new_line" data-linenumber="70" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.7.17</span></span>
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<td class="diff-line-num new new_line" data-linenumber="71" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="mosel"> <span class="n" style="color: #333;">Pass</span> <span class="m" style="color: #099;">3022</span> <span class="n" style="color: #333;">tests</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="72" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="mosel"> <span class="n" style="color: #333;">Initial</span> <span class="n" style="color: #333;">support</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num new old_line" data-linenumber="66" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="73" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="mosel"> <span class="n" style="color: #333;">Return</span> <span class="n" style="color: #333;">samples</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">separate</span> <span class="n" style="color: #333;">dimension</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">OME</span> <span class="n" style="color: #333;">series</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="74" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">modulo</span> <span class="n" style="color: #333;">dimensions</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">multiple</span> <span class="n" style="color: #333;">OME</span> <span class="n" style="color: #333;">series</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="75" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">some</span> <span class="n" style="color: #333;">test</span> <span class="n" style="color: #333;">errors</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">big</span> <span class="n" style="color: #333;">endian</span> <span class="n" style="color: #333;">systems</span> <span class="p">(#</span><span class="m" style="color: #099;">18</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="76" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">BytesWarning</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="77" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">pass</span> <span class="n" style="color: #333;">TIFF</span><span class="p">.</span><span class="n" style="color: #333;">PREDICTOR</span> <span class="n" style="color: #333;">values</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="78" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.7.4</span></span>
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<td class="diff-line-num new new_line" data-linenumber="79" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="mosel"> <span class="n" style="color: #333;">Deprecate</span> <span class="n" style="color: #333;">support</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">Python</span> <span class="m" style="color: #099;">3.6</span> <span class="p">(</span><span class="n" style="color: #333;">NEP</span> <span class="m" style="color: #099;">29</span><span class="p">).</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="80" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="mosel"> <span class="n" style="color: #333;">Move</span> <span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">subresolution</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">TiffPageSeries</span><span class="p">.</span><span class="n" style="color: #333;">levels</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="66" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="mosel"> <span class="n" style="color: #333;">Add</span> <span class="n" style="color: #333;">parser</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">SVS</span><span class="p">,</span> <span class="n" style="color: #333;">SCN</span><span class="p">,</span> <span class="n" style="color: #333;">NDPI</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">QPI</span> <span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">series</span><span class="p">.</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="66" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="82" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="mosel"> <span class="n" style="color: #333;">Read</span> <span class="n" style="color: #333;">single</span><span class="p">-</span><span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">pyramids</span><span class="p">.</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="66" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="83" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="mosel"> <span class="n" style="color: #333;">Read</span> <span class="n" style="color: #333;">NDPI</span> <span class="n" style="color: #333;">files</span> <span class="p">></span> <span class="m" style="color: #099;">4</span> <span class="n" style="color: #333;">GB</span> <span class="p">(#</span><span class="m" style="color: #099;">15</span><span class="p">).</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="66" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="84" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Include</span> <span class="n" style="color: #333;">SubIFDs</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">generic</span> <span class="n" style="color: #333;">series</span><span class="p">.</span></span>
</pre>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="mosel"> <span class="n" style="color: #333;">Preliminary</span> <span class="n" style="color: #333;">support</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">packed</span> <span class="k" style="font-weight: 600;">integer</span> <span class="n" style="color: #333;">arrays</span> <span class="p">(#</span><span class="m" style="color: #099;">11</span><span class="p">,</span> <span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="mosel"> <span class="n" style="color: #333;">Read</span> <span class="n" style="color: #333;">more</span> <span class="n" style="color: #333;">LSM</span> <span class="n" style="color: #333;">info</span> <span class="n" style="color: #333;">subrecords</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="87" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">missing</span> <span class="n" style="color: #333;">ReferenceBlackWhite</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">YCbCr</span> <span class="n" style="color: #333;">photometrics</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="88" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">reading</span> <span class="n" style="color: #333;">lossless</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">DNG</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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66
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89
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.6.3</span></span>
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67
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<td class="diff-line-num new_line old" data-linenumber="90" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="mosel"> <span class="n" style="color: #333;">Pass</span> <span class="m" style="color: #099;">2908</span> <span class="n" style="color: #333;">tests</span><span class="p">.</span></span>
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68
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90
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="mosel"> <span class="n" style="color: #333;">Support</span> <span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">PathLike</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">names</span> <span class="p">(#</span><span class="m" style="color: #099;">9</span><span class="p">).</span></span>
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69
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91
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.5.30</span></span>
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70
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92
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="mosel"> <span class="n" style="color: #333;">Re</span><span class="p">-</span><span class="n" style="color: #333;">add</span> <span class="n" style="color: #333;">pure</span> <span class="n" style="color: #333;">Python</span> <span class="n" style="color: #333;">PackBits</span> <span class="n" style="color: #333;">decoder</span><span class="p">.</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="218" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -218,10 +240,11 @@ Description: Read and write TIFF(r) files</td>
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218
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240
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="mosel"> </span>
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219
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<td class="diff-line-num new_line" data-linenumber="241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
241
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<pre style="margin: 0;"> <span id="LC241" class="line" lang="mosel"> <span class="n" style="color: #333;">Tested</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">little</span><span class="p">-</span><span class="n" style="color: #333;">endian</span> <span class="n" style="color: #333;">platforms</span> <span class="n" style="color: #333;">only</span><span class="p">.</span></span>
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220
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242
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<pre style="margin: 0;"> <span id="LC242" class="line" lang="mosel"> </span>
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221
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<pre style="margin: 0;">-<span id="LC221" class="line" lang="mosel"> <span class="n" style="color: #333;">Python</span> <span class="m" style="color: #099;">32</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">versions</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">deprecated</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="243" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
243
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<pre style="margin: 0;">+<span id="LC243" class="line" lang="mosel"> <span class="n" style="color: #333;">Python</span> <span class="m" style="color: #099;">32</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">versions</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">deprecated</span><span class="p">.</span><span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff">Python</span></span><span class="idiff"> </span><span class="p"><span class="idiff"><=</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">3.6</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">are</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">no</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">longer</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">supported</span></span><span class="p"><span class="idiff right">.</span></span></span>
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222
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244
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="mosel"> </span>
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223
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245
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="mosel"> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">relies</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">the</span> <span class="p">`</span><span class="n" style="color: #333;">imagecodecs</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">imagecodecs</span><span class="p">/>`</span><span class="n" style="color: #333;">_</span></span>
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224
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<td class="diff-line-num new_line old" data-linenumber="246" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC224" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">encoding</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">decoding</span> <span class="n" style="color: #333;">LZW</span><span class="p">,</span> <span class="n" style="color: #333;">JPEG</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">other</span> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">images</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="246" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
246
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<pre style="margin: 0;">+<span id="LC246" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">encoding</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">decoding</span> <span class="n" style="color: #333;">LZW</span><span class="p">,</span> <span class="n" style="color: #333;">JPEG</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">other</span> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">image</span></span>
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<td class="diff-line-num new old_line" data-linenumber="225" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="247" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
247
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<pre style="margin: 0;">+<span id="LC247" class="line" lang="mosel"> <span class="n" style="color: #333;">segments</span><span class="p">.</span></span>
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225
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248
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<pre style="margin: 0;"> <span id="LC248" class="line" lang="mosel"> </span>
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226
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<td class="diff-line-num new_line" data-linenumber="249" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
249
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="mosel"> <span class="n" style="color: #333;">Several</span> <span class="n" style="color: #333;">TIFF</span><span class="p">-</span><span class="n" style="color: #333;">like</span> <span class="n" style="color: #333;">formats</span> <span class="k" style="font-weight: 600;">do</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">strictly</span> <span class="n" style="color: #333;">adhere</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">TIFF6</span> <span class="n" style="color: #333;">specification</span><span class="p">,</span></span>
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227
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250
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<pre style="margin: 0;"> <span id="LC250" class="line" lang="mosel"> <span class="n" style="color: #333;">some</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">which</span> <span class="n" style="color: #333;">allow</span> <span class="n" style="color: #333;">file</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">data</span> <span class="n" style="color: #333;">sizes</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">exceed</span> <span class="n" style="color: #333;">the</span> <span class="m" style="color: #099;">4</span> <span class="n" style="color: #333;">GB</span> <span class="n" style="color: #333;">limit</span><span class="p">:</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="238" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="261" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -238,21 +261,23 @@ Description: Read and write TIFF(r) files</td>
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238
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<td class="diff-line-num new_line" data-linenumber="261" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
261
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<pre style="margin: 0;"> <span id="LC261" class="line" lang="mosel"> <span class="n" style="color: #333;">files</span><span class="p">.</span> <span class="n" style="color: #333;">The</span> <span class="m" style="color: #099;">8</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">UTF</span><span class="p">-</span><span class="m" style="color: #099;">8</span> <span class="n" style="color: #333;">encoded</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">XML</span> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">found</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">ImageDescription</span></span>
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<td class="diff-line-num old_line" data-linenumber="239" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
239
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<td class="diff-line-num new_line" data-linenumber="262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
262
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<pre style="margin: 0;"> <span id="LC262" class="line" lang="mosel"> <span class="n" style="color: #333;">tag</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">first</span> <span class="n" style="color: #333;">IFD</span> <span class="n" style="color: #333;">defines</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">position</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">IFDs</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">high</span></span>
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<td class="diff-line-num old_line" data-linenumber="240" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
240
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<td class="diff-line-num new_line" data-linenumber="263" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
263
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<pre style="margin: 0;"> <span id="LC263" class="line" lang="mosel"> <span class="n" style="color: #333;">dimensional</span> <span class="n" style="color: #333;">data</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">files</span><span class="p">,</span> <span class="n" style="color: #333;">except</span> <span class="n" style="color: #333;">when</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">XML</span></span>
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<td class="diff-line-num old old_line" data-linenumber="241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
241
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<td class="diff-line-num new_line old" data-linenumber="264" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC241" class="line" lang="mosel"> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">stored</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">separate</span> <span class="n" style="color: #333;">file</span><span class="p">.</span></span>
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<td class="diff-line-num new old_line" data-linenumber="242" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="264" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
264
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<pre style="margin: 0;">+<span id="LC264" class="line" lang="mosel"> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">stored</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">separate</span> <span class="n" style="color: #333;">file</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">numpy</span> <span class="n" style="color: #333;">arrays</span></span>
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<td class="diff-line-num new old_line" data-linenumber="242" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="265" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
265
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<pre style="margin: 0;">+<span id="LC265" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">single</span><span class="p">-</span><span class="n" style="color: #333;">file</span><span class="p">,</span> <span class="n" style="color: #333;">non</span><span class="p">-</span><span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span><span class="p">.</span></span>
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242
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<td class="diff-line-num new_line" data-linenumber="266" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
266
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<pre style="margin: 0;"> <span id="LC266" class="line" lang="mosel"> <span class="p">*</span> <span class="p">*</span><span class="n" style="color: #333;">LSM</span><span class="p">*</span> <span class="n" style="color: #333;">stores</span> <span class="n" style="color: #333;">all</span> <span class="n" style="color: #333;">IFDs</span> <span class="n" style="color: #333;">below</span> <span class="m" style="color: #099;">4</span> <span class="n" style="color: #333;">GB</span> <span class="n" style="color: #333;">but</span> <span class="n" style="color: #333;">wraps</span> <span class="n" style="color: #333;">around</span> <span class="m" style="color: #099;">32</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">StripOffsets</span><span class="p">.</span></span>
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<td class="diff-line-num old_line" data-linenumber="243" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
243
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<td class="diff-line-num new_line" data-linenumber="267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
267
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<pre style="margin: 0;"> <span id="LC267" class="line" lang="mosel"> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">StripOffsets</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">each</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">position</span> <span class="n" style="color: #333;">require</span> <span class="n" style="color: #333;">separate</span> <span class="n" style="color: #333;">unwrapping</span><span class="p">.</span></span>
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<td class="diff-line-num old_line" data-linenumber="244" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
244
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<td class="diff-line-num new_line" data-linenumber="268" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
268
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<pre style="margin: 0;"> <span id="LC268" class="line" lang="mosel"> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">StripByteCounts</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">contains</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">number</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">bytes</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">uncompressed</span></span>
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<td class="diff-line-num old_line" data-linenumber="245" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
245
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<td class="diff-line-num new_line" data-linenumber="269" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
269
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<pre style="margin: 0;"> <span id="LC269" class="line" lang="mosel"> <span class="n" style="color: #333;">data</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">large</span> <span class="n" style="color: #333;">LSM</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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<td class="diff-line-num old_line" data-linenumber="246" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
246
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<td class="diff-line-num new_line" data-linenumber="270" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
270
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<pre style="margin: 0;"> <span id="LC270" class="line" lang="mosel"> <span class="p">*</span> <span class="p">*</span><span class="n" style="color: #333;">NDPI</span><span class="p">*</span> <span class="k" style="font-weight: 600;">uses</span> <span class="n" style="color: #333;">some</span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">offsets</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">header</span><span class="p">,</span> <span class="n" style="color: #333;">IFD</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">structures</span><span class="p">.</span></span>
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<td class="diff-line-num old_line" data-linenumber="247" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
247
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<td class="diff-line-num new_line" data-linenumber="271" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
271
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<pre style="margin: 0;"> <span id="LC271" class="line" lang="mosel"> <span class="n" style="color: #333;">Tag</span> <span class="n" style="color: #333;">values</span><span class="p">/</span><span class="n" style="color: #333;">offsets</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">corrected</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">high</span> <span class="n" style="color: #333;">bits</span> <span class="n" style="color: #333;">stored</span> <span class="n" style="color: #333;">after</span> <span class="n" style="color: #333;">IFD</span></span>
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248
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<td class="diff-line-num new_line old" data-linenumber="272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC248" class="line" lang="mosel"> <span class="n" style="color: #333;">structures</span><span class="p">.</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">tiles</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">dimensions</span> <span class="p">></span> <span class="m" style="color: #099;">65536</span> <span class="n" style="color: #333;">are</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">readable</span></span>
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249
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<td class="diff-line-num new_line old" data-linenumber="272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC249" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">libjpeg</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">NDPI</span> <span class="n" style="color: #333;">files</span> <span class="p"><</span> <span class="m" style="color: #099;">4</span> <span class="n" style="color: #333;">GB</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">decompress</span> <span class="n" style="color: #333;">large</span> <span class="n" style="color: #333;">JPEG</span></span>
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250
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<td class="diff-line-num new_line old" data-linenumber="272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC250" class="line" lang="mosel"> <span class="n" style="color: #333;">tiles</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">imagecodecs</span> <span class="n" style="color: #333;">library</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">Windows</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
272
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<pre style="margin: 0;">+<span id="LC272" class="line" lang="mosel"> <span class="n" style="color: #333;">structures</span><span class="p">.</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">segments</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">dimensions</span> <span class="p">></span><span class="m" style="color: #099;">65536</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">missing</span></span>
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<td class="diff-line-num new old_line" data-linenumber="251" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="273" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
273
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<pre style="margin: 0;">+<span id="LC273" class="line" lang="mosel"> <span class="n" style="color: #333;">restart</span> <span class="n" style="color: #333;">markers</span> <span class="n" style="color: #333;">are</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">readable</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">libjpeg</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">NDPI</span></span>
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<td class="diff-line-num new new_line" data-linenumber="274" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
274
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<pre style="margin: 0;">+<span id="LC274" class="line" lang="mosel"> <span class="n" style="color: #333;">files</span> <span class="p">></span> <span class="m" style="color: #099;">4</span> <span class="n" style="color: #333;">GB</span><span class="p">.</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">segments</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">restart</span> <span class="n" style="color: #333;">markers</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">dimensions</span> <span class="p">></span><span class="m" style="color: #099;">65536</span> <span class="n" style="color: #333;">can</span></span>
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<td class="diff-line-num new new_line" data-linenumber="275" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
275
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<pre style="margin: 0;">+<span id="LC275" class="line" lang="mosel"> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">decoded</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">imagecodecs</span> <span class="n" style="color: #333;">library</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">Windows</span><span class="p">.</span></span>
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251
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<td class="diff-line-num new_line" data-linenumber="276" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
276
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<pre style="margin: 0;"> <span id="LC276" class="line" lang="mosel"> <span class="p">*</span> <span class="p">*</span><span class="n" style="color: #333;">ScanImage</span><span class="p">*</span> <span class="n" style="color: #333;">optionally</span> <span class="n" style="color: #333;">allows</span> <span class="n" style="color: #333;">corrupt</span> <span class="n" style="color: #333;">non</span><span class="p">-</span><span class="n" style="color: #333;">BigTIFF</span> <span class="n" style="color: #333;">files</span> <span class="p">></span> <span class="m" style="color: #099;">2</span> <span class="n" style="color: #333;">GB</span><span class="p">.</span> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">values</span></span>
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252
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<td class="diff-line-num new_line" data-linenumber="277" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
277
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<pre style="margin: 0;"> <span id="LC277" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">StripOffsets</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">StripByteCounts</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">recovered</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">constant</span></span>
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253
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<td class="diff-line-num new_line" data-linenumber="278" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
278
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<pre style="margin: 0;"> <span id="LC278" class="line" lang="mosel"> <span class="n" style="color: #333;">differences</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">offsets</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">IFD</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">values</span> <span class="n" style="color: #333;">throughout</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">file</span><span class="p">.</span></span>
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254
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<td class="diff-line-num new_line old" data-linenumber="279" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC254" class="line" lang="mosel"> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">such</span> <span class="n" style="color: #333;">files</span> <span class="n" style="color: #333;"><span class="idiff left">on</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">Python</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">3</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">if</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">the</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">image</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">data</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">are</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">stored</span></span></span>
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255
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<td class="diff-line-num new_line old" data-linenumber="279" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC255" class="line" lang="mosel"> <span class="n" style="color: #333;"><span class="idiff left">contiguously</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">in</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">each</span> <span class="n" style="color: #333;">page</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="279" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
279
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<pre style="margin: 0;">+<span id="LC279" class="line" lang="mosel"> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">such</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;"><span class="idiff left">if</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">the</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">image</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">data</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">are</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">stored</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">contiguously</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff right">in</span></span></span>
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<td class="diff-line-num new new_line" data-linenumber="280" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
280
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<pre style="margin: 0;">+<span id="LC280" class="line" lang="mosel"> <span class="n" style="color: #333;">each</span> <span class="n" style="color: #333;">page</span><span class="p">.</span></span>
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256
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<td class="diff-line-num new_line" data-linenumber="281" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
281
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<pre style="margin: 0;"> <span id="LC281" class="line" lang="mosel"> <span class="p">*</span> <span class="p">*</span><span class="n" style="color: #333;">GeoTIFF</span><span class="p">*</span> <span class="n" style="color: #333;">sparse</span> <span class="n" style="color: #333;">files</span> <span class="n" style="color: #333;">allow</span> <span class="n" style="color: #333;">strip</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">tile</span> <span class="n" style="color: #333;">offsets</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">byte</span> <span class="n" style="color: #333;">counts</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">be</span> <span class="m" style="color: #099;">0.</span></span>
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257
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<td class="diff-line-num new_line" data-linenumber="282" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
282
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<pre style="margin: 0;"> <span id="LC282" class="line" lang="mosel"> <span class="n" style="color: #333;">Such</span> <span class="n" style="color: #333;">segments</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">implicitly</span> <span class="k" style="font-weight: 600;">set</span> <span class="k" style="font-weight: 600;">to</span> <span class="m" style="color: #099;">0</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">NODATA</span> <span class="n" style="color: #333;">value</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">reading</span><span class="p">.</span></span>
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258
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<td class="diff-line-num new_line" data-linenumber="283" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC283" class="line" lang="mosel"> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">GeoTIFF</span> <span class="n" style="color: #333;">sparse</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -285,29 +310,33 @@ Description: Read and write TIFF(r) files</td>
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<pre style="margin: 0;"> <span id="LC310" class="line" lang="mosel"> </span>
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<pre style="margin: 0;"> <span id="LC311" class="line" lang="mosel"> <span class="n" style="color: #333;">References</span></span>
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<pre style="margin: 0;"> <span id="LC312" class="line" lang="mosel"> <span class="p">----------</span></span>
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<pre style="margin: 0;">-<span id="LC288" class="line" lang="mosel"> <span class="m" style="color: #099;">1.</span> <span class="n" style="color: #333;">TIFF</span> <span class="m" style="color: #099;">6.0</span> <span class="n" style="color: #333;">Specification</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">Supplements</span><span class="p">.</span> <span class="n" style="color: #333;">Adobe</span> <span class="n" style="color: #333;">Systems</span> <span class="n" style="color: #333;">Incorporated</span><span class="p">.</span></span>
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<pre style="margin: 0;">-<span id="LC289" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">adobe</span><span class="p">.</span><span class="n" style="color: #333;">io</span><span class="p">/</span><span class="n" style="color: #333;">open</span><span class="p">/</span><span class="n" style="color: #333;">standards</span><span class="p">/</span><span class="n" style="color: #333;">TIFF</span><span class="p">.</span><span class="n" style="color: #333;">html</span></span>
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290
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<pre style="margin: 0;">-<span id="LC290" class="line" lang="mosel"> <span class="m" style="color: #099;">2.</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span> <span class="n" style="color: #333;">FAQ</span><span class="p">.</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">awaresystems</span><span class="p">.</span><span class="n" style="color: #333;">be</span><span class="p">/</span><span class="n" style="color: #333;">imaging</span><span class="p">/</span><span class="n" style="color: #333;">tiff</span><span class="p">/</span><span class="n" style="color: #333;">faq</span><span class="p">.</span><span class="n" style="color: #333;">html</span></span>
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<pre style="margin: 0;">-<span id="LC291" class="line" lang="mosel"> <span class="m" style="color: #099;">3.</span> <span class="n" style="color: #333;">MetaMorph</span> <span class="n" style="color: #333;">Stack</span> <span class="p">(</span><span class="n" style="color: #333;">STK</span><span class="p">)</span> <span class="n" style="color: #333;">Image</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span><span class="p">.</span></span>
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292
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<pre style="margin: 0;">-<span id="LC292" class="line" lang="mosel"> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">mdc</span><span class="p">.</span><span class="n" style="color: #333;">custhelp</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">app</span><span class="p">/</span><span class="n" style="color: #333;">answers</span><span class="p">/</span><span class="n" style="color: #333;">detail</span><span class="p">/</span><span class="n" style="color: #333;">a_id</span><span class="p">/</span><span class="m" style="color: #099;">18862</span></span>
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<pre style="margin: 0;">-<span id="LC293" class="line" lang="mosel"> <span class="m" style="color: #099;">4.</span> <span class="n" style="color: #333;">Image</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span> <span class="n" style="color: #333;">Description</span> <span class="n" style="color: #333;">LSM</span> <span class="m" style="color: #099;">5</span><span class="p">/</span><span class="m" style="color: #099;">7</span> <span class="n" style="color: #333;">Release</span> <span class="m" style="color: #099;">6.0</span> <span class="p">(</span><span class="n" style="color: #333;">ZEN</span> <span class="m" style="color: #099;">2010</span><span class="p">).</span></span>
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<pre style="margin: 0;">-<span id="LC294" class="line" lang="mosel"> <span class="n" style="color: #333;">Carl</span> <span class="n" style="color: #333;">Zeiss</span> <span class="n" style="color: #333;">MicroImaging</span> <span class="n" style="color: #333;">GmbH</span><span class="p">.</span> <span class="n" style="color: #333;">BioSciences</span><span class="p">.</span> <span class="n" style="color: #333;">May</span> <span class="m" style="color: #099;">10</span><span class="p">,</span> <span class="m" style="color: #099;">2011</span></span>
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295
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<pre style="margin: 0;">-<span id="LC295" class="line" lang="mosel"> <span class="m" style="color: #099;">5.</span> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">format</span><span class="p">.</span></span>
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296
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<td class="diff-line-num new_line old" data-linenumber="313" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC296" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">docs</span><span class="p">.</span><span class="n" style="color: #333;">openmicroscopy</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">ome</span><span class="p">-</span><span class="k" style="font-weight: 600;">model</span><span class="p">/</span><span class="m" style="color: #099;">5.6.4</span><span class="p">/</span><span class="n" style="color: #333;">ome</span><span class="p">-</span><span class="n" style="color: #333;">tiff</span><span class="p">/</span></span>
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<td class="diff-line-num old old_line" data-linenumber="297" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
297
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<pre style="margin: 0;">-<span id="LC297" class="line" lang="mosel"> <span class="m" style="color: #099;">6.</span> <span class="n" style="color: #333;">UltraQuant</span><span class="p">(</span><span class="n" style="color: #333;">r</span><span class="p">)</span> <span class="k" style="font-weight: 600;">Version</span> <span class="m" style="color: #099;">6.0</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">Windows</span> <span class="n" style="color: #333;">Start</span><span class="p">-</span><span class="n" style="color: #333;">Up</span> <span class="n" style="color: #333;">Guide</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="298" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
298
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<pre style="margin: 0;">-<span id="LC298" class="line" lang="mosel"> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">ultralum</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">images</span><span class="p">%</span><span class="m" style="color: #099;">20ul</span><span class="n" style="color: #333;">tralum</span><span class="p">/</span><span class="n" style="color: #333;">pdf</span><span class="p">/</span><span class="n" style="color: #333;">UQStart</span><span class="p">%</span><span class="m" style="color: #099;">20U</span><span class="n" style="color: #333;">p</span><span class="p">%</span><span class="m" style="color: #099;">20</span><span class="n" style="color: #333;">Guide</span><span class="p">.</span><span class="n" style="color: #333;">pdf</span></span>
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<pre style="margin: 0;">-<span id="LC299" class="line" lang="mosel"> <span class="m" style="color: #099;">7.</span> <span class="n" style="color: #333;">Micro</span><span class="p">-</span><span class="n" style="color: #333;">Manager</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Formats</span><span class="p">.</span></span>
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300
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<pre style="margin: 0;">-<span id="LC300" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">micro</span><span class="p">-</span><span class="n" style="color: #333;">manager</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">wiki</span><span class="p">/</span><span class="n" style="color: #333;">Micro</span><span class="p">-</span><span class="n" style="color: #333;">Manager_File_Formats</span></span>
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<pre style="margin: 0;">-<span id="LC301" class="line" lang="mosel"> <span class="m" style="color: #099;">8.</span> <span class="n" style="color: #333;">Tags</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">TIFF</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">Related</span> <span class="n" style="color: #333;">Specifications</span><span class="p">.</span> <span class="n" style="color: #333;">Digital</span> <span class="n" style="color: #333;">Preservation</span><span class="p">.</span></span>
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<pre style="margin: 0;">-<span id="LC302" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">loc</span><span class="p">.</span><span class="n" style="color: #333;">gov</span><span class="p">/</span><span class="n" style="color: #333;">preservation</span><span class="p">/</span><span class="n" style="color: #333;">digital</span><span class="p">/</span><span class="n" style="color: #333;">formats</span><span class="p">/</span><span class="n" style="color: #333;">content</span><span class="p">/</span><span class="n" style="color: #333;">tiff_tags</span><span class="p">.</span><span class="n" style="color: #333;">shtml</span></span>
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<pre style="margin: 0;">-<span id="LC303" class="line" lang="mosel"> <span class="m" style="color: #099;">9.</span> <span class="n" style="color: #333;">ScanImage</span> <span class="n" style="color: #333;">BigTiff</span> <span class="n" style="color: #333;">Specification</span> <span class="p">-</span> <span class="n" style="color: #333;">ScanImage</span> <span class="m" style="color: #099;">2016.</span></span>
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<pre style="margin: 0;">-<span id="LC304" class="line" lang="mosel"> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">scanimage</span><span class="p">.</span><span class="n" style="color: #333;">vidriotechnologies</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">display</span><span class="p">/</span><span class="n" style="color: #333;">SI2016</span><span class="p">/</span></span>
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<pre style="margin: 0;">-<span id="LC305" class="line" lang="mosel"> <span class="n" style="color: #333;">ScanImage</span><span class="p">+</span><span class="n" style="color: #333;">BigTiff</span><span class="p">+</span><span class="n" style="color: #333;">Specification</span></span>
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<pre style="margin: 0;">-<span id="LC306" class="line" lang="mosel"> <span class="m" style="color: #099;">10.</span> <span class="n" style="color: #333;">CIPA</span> <span class="n" style="color: #333;">DC</span><span class="p">-</span><span class="m" style="color: #099;">008</span><span class="p">-</span><span class="m" style="color: #099;">2016</span><span class="p">:</span> <span class="n" style="color: #333;">Exchangeable</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">format</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">digital</span> <span class="n" style="color: #333;">still</span> <span class="n" style="color: #333;">cameras</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC307" class="line" lang="mosel"> <span class="n" style="color: #333;">Exif</span> <span class="k" style="font-weight: 600;">Version</span> <span class="m" style="color: #099;">2.31</span><span class="p">.</span></span>
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<pre style="margin: 0;">-<span id="LC308" class="line" lang="mosel"> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">cipa</span><span class="p">.</span><span class="n" style="color: #333;">jp</span><span class="p">/</span><span class="n" style="color: #333;">std</span><span class="p">/</span><span class="n" style="color: #333;">documents</span><span class="p">/</span><span class="n" style="color: #333;">e</span><span class="p">/</span><span class="n" style="color: #333;">DC</span><span class="p">-</span><span class="m" style="color: #099;">008</span><span class="p">-</span><span class="n" style="color: #333;">Translation</span><span class="p">-</span><span class="m" style="color: #099;">2016</span><span class="p">-</span><span class="n" style="color: #333;">E</span><span class="p">.</span><span class="n" style="color: #333;">pdf</span></span>
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<pre style="margin: 0;">-<span id="LC309" class="line" lang="mosel"> <span class="m" style="color: #099;">11.</span> <span class="n" style="color: #333;">ZIF</span><span class="p">,</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">Zoomable</span> <span class="n" style="color: #333;">Image</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">format</span><span class="p">.</span> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">zif</span><span class="p">.</span><span class="n" style="color: #333;">photo</span><span class="p">/</span></span>
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<pre style="margin: 0;">-<span id="LC310" class="line" lang="mosel"> <span class="m" style="color: #099;">12.</span> <span class="n" style="color: #333;">GeoTIFF</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">gdal</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">drivers</span><span class="p">/</span><span class="n" style="color: #333;">raster</span><span class="p">/</span><span class="n" style="color: #333;">gtiff</span><span class="p">.</span><span class="n" style="color: #333;">html</span></span>
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<pre style="margin: 0;">+<span id="LC313" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">TIFF</span> <span class="m" style="color: #099;">6.0</span> <span class="n" style="color: #333;">Specification</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">Supplements</span><span class="p">.</span> <span class="n" style="color: #333;">Adobe</span> <span class="n" style="color: #333;">Systems</span> <span class="n" style="color: #333;">Incorporated</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC314" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">adobe</span><span class="p">.</span><span class="n" style="color: #333;">io</span><span class="p">/</span><span class="n" style="color: #333;">open</span><span class="p">/</span><span class="n" style="color: #333;">standards</span><span class="p">/</span><span class="n" style="color: #333;">TIFF</span><span class="p">.</span><span class="n" style="color: #333;">html</span></span>
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<pre style="margin: 0;">+<span id="LC315" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span> <span class="n" style="color: #333;">FAQ</span><span class="p">.</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">awaresystems</span><span class="p">.</span><span class="n" style="color: #333;">be</span><span class="p">/</span><span class="n" style="color: #333;">imaging</span><span class="p">/</span><span class="n" style="color: #333;">tiff</span><span class="p">/</span><span class="n" style="color: #333;">faq</span><span class="p">.</span><span class="n" style="color: #333;">html</span></span>
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316
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<pre style="margin: 0;">+<span id="LC316" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">BigTIFF</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span><span class="p">.</span></span>
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317
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<pre style="margin: 0;">+<span id="LC317" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">awaresystems</span><span class="p">.</span><span class="n" style="color: #333;">be</span><span class="p">/</span><span class="n" style="color: #333;">imaging</span><span class="p">/</span><span class="n" style="color: #333;">tiff</span><span class="p">/</span><span class="n" style="color: #333;">bigtiff</span><span class="p">.</span><span class="n" style="color: #333;">html</span></span>
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<td class="diff-line-num new new_line" data-linenumber="318" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
318
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<pre style="margin: 0;">+<span id="LC318" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">MetaMorph</span> <span class="n" style="color: #333;">Stack</span> <span class="p">(</span><span class="n" style="color: #333;">STK</span><span class="p">)</span> <span class="n" style="color: #333;">Image</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span><span class="p">.</span></span>
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319
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<pre style="margin: 0;">+<span id="LC319" class="line" lang="mosel"> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">mdc</span><span class="p">.</span><span class="n" style="color: #333;">custhelp</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">app</span><span class="p">/</span><span class="n" style="color: #333;">answers</span><span class="p">/</span><span class="n" style="color: #333;">detail</span><span class="p">/</span><span class="n" style="color: #333;">a_id</span><span class="p">/</span><span class="m" style="color: #099;">18862</span></span>
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<pre style="margin: 0;">+<span id="LC320" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Image</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span> <span class="n" style="color: #333;">Description</span> <span class="n" style="color: #333;">LSM</span> <span class="m" style="color: #099;">5</span><span class="p">/</span><span class="m" style="color: #099;">7</span> <span class="n" style="color: #333;">Release</span> <span class="m" style="color: #099;">6.0</span> <span class="p">(</span><span class="n" style="color: #333;">ZEN</span> <span class="m" style="color: #099;">2010</span><span class="p">).</span></span>
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<pre style="margin: 0;">+<span id="LC321" class="line" lang="mosel"> <span class="n" style="color: #333;">Carl</span> <span class="n" style="color: #333;">Zeiss</span> <span class="n" style="color: #333;">MicroImaging</span> <span class="n" style="color: #333;">GmbH</span><span class="p">.</span> <span class="n" style="color: #333;">BioSciences</span><span class="p">.</span> <span class="n" style="color: #333;">May</span> <span class="m" style="color: #099;">10</span><span class="p">,</span> <span class="m" style="color: #099;">2011</span></span>
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<pre style="margin: 0;">+<span id="LC322" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">format</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC323" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">docs</span><span class="p">.</span><span class="n" style="color: #333;">openmicroscopy</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">ome</span><span class="p">-</span><span class="k" style="font-weight: 600;">model</span><span class="p">/</span><span class="n" style="color: #333;">latest</span><span class="p">/</span></span>
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<pre style="margin: 0;">+<span id="LC324" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">UltraQuant</span><span class="p">(</span><span class="n" style="color: #333;">r</span><span class="p">)</span> <span class="k" style="font-weight: 600;">Version</span> <span class="m" style="color: #099;">6.0</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">Windows</span> <span class="n" style="color: #333;">Start</span><span class="p">-</span><span class="n" style="color: #333;">Up</span> <span class="n" style="color: #333;">Guide</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC325" class="line" lang="mosel"> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">ultralum</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">images</span><span class="p">%</span><span class="m" style="color: #099;">20ul</span><span class="n" style="color: #333;">tralum</span><span class="p">/</span><span class="n" style="color: #333;">pdf</span><span class="p">/</span><span class="n" style="color: #333;">UQStart</span><span class="p">%</span><span class="m" style="color: #099;">20U</span><span class="n" style="color: #333;">p</span><span class="p">%</span><span class="m" style="color: #099;">20</span><span class="n" style="color: #333;">Guide</span><span class="p">.</span><span class="n" style="color: #333;">pdf</span></span>
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<pre style="margin: 0;">+<span id="LC326" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Micro</span><span class="p">-</span><span class="n" style="color: #333;">Manager</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Formats</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC327" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">micro</span><span class="p">-</span><span class="n" style="color: #333;">manager</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">wiki</span><span class="p">/</span><span class="n" style="color: #333;">Micro</span><span class="p">-</span><span class="n" style="color: #333;">Manager_File_Formats</span></span>
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<pre style="margin: 0;">+<span id="LC328" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">ScanImage</span> <span class="n" style="color: #333;">BigTiff</span> <span class="n" style="color: #333;">Specification</span> <span class="p">-</span> <span class="n" style="color: #333;">ScanImage</span> <span class="m" style="color: #099;">2016.</span></span>
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<pre style="margin: 0;">+<span id="LC329" class="line" lang="mosel"> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">scanimage</span><span class="p">.</span><span class="n" style="color: #333;">vidriotechnologies</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">display</span><span class="p">/</span><span class="n" style="color: #333;">SI2016</span><span class="p">/</span></span>
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<pre style="margin: 0;">+<span id="LC330" class="line" lang="mosel"> <span class="n" style="color: #333;">ScanImage</span><span class="p">+</span><span class="n" style="color: #333;">BigTiff</span><span class="p">+</span><span class="n" style="color: #333;">Specification</span></span>
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<pre style="margin: 0;">+<span id="LC331" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">ZIF</span><span class="p">,</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">Zoomable</span> <span class="n" style="color: #333;">Image</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">format</span><span class="p">.</span> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">zif</span><span class="p">.</span><span class="n" style="color: #333;">photo</span><span class="p">/</span></span>
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<pre style="margin: 0;">+<span id="LC332" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">GeoTIFF</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">gdal</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">drivers</span><span class="p">/</span><span class="n" style="color: #333;">raster</span><span class="p">/</span><span class="n" style="color: #333;">gtiff</span><span class="p">.</span><span class="n" style="color: #333;">html</span></span>
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<pre style="margin: 0;">+<span id="LC333" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Cloud</span> <span class="n" style="color: #333;">optimized</span> <span class="n" style="color: #333;">GeoTIFF</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC334" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">github</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">cogeotiff</span><span class="p">/</span><span class="n" style="color: #333;">cog</span><span class="p">-</span><span class="n" style="color: #333;">spec</span><span class="p">/</span><span class="n" style="color: #333;">blob</span><span class="p">/</span><span class="n" style="color: #333;">master</span><span class="p">/</span><span class="n" style="color: #333;">spec</span><span class="p">.</span><span class="n" style="color: #333;">md</span></span>
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<pre style="margin: 0;">+<span id="LC335" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Tags</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">TIFF</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">Related</span> <span class="n" style="color: #333;">Specifications</span><span class="p">.</span> <span class="n" style="color: #333;">Digital</span> <span class="n" style="color: #333;">Preservation</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC336" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">loc</span><span class="p">.</span><span class="n" style="color: #333;">gov</span><span class="p">/</span><span class="n" style="color: #333;">preservation</span><span class="p">/</span><span class="n" style="color: #333;">digital</span><span class="p">/</span><span class="n" style="color: #333;">formats</span><span class="p">/</span><span class="n" style="color: #333;">content</span><span class="p">/</span><span class="n" style="color: #333;">tiff_tags</span><span class="p">.</span><span class="n" style="color: #333;">shtml</span></span>
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<pre style="margin: 0;">+<span id="LC337" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">CIPA</span> <span class="n" style="color: #333;">DC</span><span class="p">-</span><span class="m" style="color: #099;">008</span><span class="p">-</span><span class="m" style="color: #099;">2016</span><span class="p">:</span> <span class="n" style="color: #333;">Exchangeable</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">format</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">digital</span> <span class="n" style="color: #333;">still</span> <span class="n" style="color: #333;">cameras</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC338" class="line" lang="mosel"> <span class="n" style="color: #333;">Exif</span> <span class="k" style="font-weight: 600;">Version</span> <span class="m" style="color: #099;">2.31</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC339" class="line" lang="mosel"> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">cipa</span><span class="p">.</span><span class="n" style="color: #333;">jp</span><span class="p">/</span><span class="n" style="color: #333;">std</span><span class="p">/</span><span class="n" style="color: #333;">documents</span><span class="p">/</span><span class="n" style="color: #333;">e</span><span class="p">/</span><span class="n" style="color: #333;">DC</span><span class="p">-</span><span class="m" style="color: #099;">008</span><span class="p">-</span><span class="n" style="color: #333;">Translation</span><span class="p">-</span><span class="m" style="color: #099;">2016</span><span class="p">-</span><span class="n" style="color: #333;">E</span><span class="p">.</span><span class="n" style="color: #333;">pdf</span></span>
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<pre style="margin: 0;"> <span id="LC340" class="line" lang="mosel"> </span>
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<pre style="margin: 0;"> <span id="LC341" class="line" lang="mosel"> <span class="n" style="color: #333;">Examples</span></span>
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<pre style="margin: 0;"> <span id="LC342" class="line" lang="mosel"> <span class="p">--------</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="469" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -440,19 +469,21 @@ Description: Read and write TIFF(r) files</td>
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469
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<pre style="margin: 0;"> <span id="LC469" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tag_name</span><span class="p">,</span> <span class="n" style="color: #333;">tag_value</span> <span class="p">=</span> <span class="n" style="color: #333;">tag</span><span class="p">.</span><span class="n" style="color: #333;">name</span><span class="p">,</span> <span class="n" style="color: #333;">tag</span><span class="p">.</span><span class="n" style="color: #333;">value</span></span>
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<pre style="margin: 0;"> <span id="LC470" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">image</span> <span class="p">=</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC471" class="line" lang="mosel"> </span>
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<pre style="margin: 0;">-<span id="LC443" class="line" lang="mosel"> <span class="n" style="color: #333;"><span class="idiff left">Save</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">two</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">image</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">series</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">to</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">a</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC472" class="line" lang="mosel"> <span class="n" style="color: #333;"><span class="idiff left">Write</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">two</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">numpy</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">arrays</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">to</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">a</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">multi</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">series</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">OME</span></span><span class="p"><span class="idiff right">-</span></span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC473" class="line" lang="mosel"> </span>
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<pre style="margin: 0;">-<span id="LC445" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data0</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">randint</span><span class="p">(</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="m" style="color: #099;">255</span><span class="p">,</span> <span class="p">(</span><span class="m" style="color: #099;">3<span class="idiff left">01</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff right">219</span></span><span class="p">,</span> <span class="m" style="color: #099;">3</span><span class="p">),</span> <span class="s1" style="color: #d14;">'uint8'</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC446" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data1</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">randint</span><span class="p">(</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="m" style="color: #099;"><span class="idiff left">255</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="p"><span class="idiff">(</span></span><span class="m" style="color: #099;"><span class="idiff">5</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">301</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff right">219</span></span><span class="p">),</span> <span class="s1" style="color: #d14;">'uint16'</span><span class="p">)</span></span>
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447
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<pre style="margin: 0;">-<span id="LC447" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.<span class="idiff left right">tif'</span></span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC474" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data0</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">randint</span><span class="p">(</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="m" style="color: #099;">255</span><span class="p">,</span> <span class="p">(</span><span class="m" style="color: #099;">3<span class="idiff left">2</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff right">32</span></span><span class="p">,</span> <span class="m" style="color: #099;">3</span><span class="p">),</span> <span class="s1" style="color: #d14;">'uint8'</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC475" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data1</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">randint</span><span class="p">(</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="m" style="color: #099;"><span class="idiff left">1023</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="p"><span class="idiff">(</span></span><span class="m" style="color: #099;"><span class="idiff">5</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">256</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff right">256</span></span><span class="p">),</span> <span class="s1" style="color: #d14;">'uint16'</span><span class="p">)</span></span>
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476
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<pre style="margin: 0;">+<span id="LC476" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.<span class="idiff left">ome.tif'</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">ome</span></span><span class="p"><span class="idiff">=</span></span><span class="nb" style="color: #0086b3;"><span class="idiff right">True</span></span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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448
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<td class="diff-line-num new_line" data-linenumber="477" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
477
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<pre style="margin: 0;"> <span id="LC477" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data0</span><span class="p">,</span> <span class="n" style="color: #333;">compress</span><span class="p">=</span><span class="m" style="color: #099;">6</span><span class="p">,</span> <span class="n" style="color: #333;">photometric</span><span class="p">=</span><span class="s1" style="color: #d14;">'rgb'</span><span class="p">)</span></span>
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449
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<td class="diff-line-num new_line old" data-linenumber="478" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC449" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data1</span><span class="p">,</span> <span class="n" style="color: #333;">compress</span><span class="p">=</span><span class="m" style="color: #099;">6</span><span class="p">,</span> <span class="n" style="color: #333;">photometric</span><span class="p">=</span><span class="s1" style="color: #d14;">'minisblack'</span><span class="p">,</span> <span class="n" style="color: #333;">contiguous</span><span class="p">=</span><span class="nb" style="color: #0086b3;">False</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="478" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
478
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<pre style="margin: 0;">+<span id="LC478" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data1</span><span class="p">,</span> <span class="n" style="color: #333;">photometric</span><span class="p">=</span><span class="s1" style="color: #d14;">'minisblack'</span><span class="p">,</span> <span class="n" style="color: #333;">contiguous</span><span class="p">=</span><span class="nb" style="color: #0086b3;">False</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="479" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
479
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<pre style="margin: 0;">+<span id="LC479" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">metadata</span><span class="p">=</span><span class="n" style="color: #333;">dict</span><span class="p">(</span><span class="n" style="color: #333;">axes</span><span class="p">=</span><span class="s1" style="color: #d14;">'ZYX'</span><span class="p">,</span> <span class="n" style="color: #333;">SignificantBits</span><span class="p">=</span><span class="m" style="color: #099;">10</span><span class="p">,</span></span>
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480
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<pre style="margin: 0;">+<span id="LC480" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">PositionZ</span><span class="p">=[</span><span class="m" style="color: #099;">0.0</span><span class="p">,</span> <span class="m" style="color: #099;">1.0</span><span class="p">,</span> <span class="m" style="color: #099;">2.0</span><span class="p">,</span> <span class="m" style="color: #099;">3.0</span><span class="p">,</span> <span class="m" style="color: #099;">4.0</span><span class="p">]))</span></span>
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450
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481
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<pre style="margin: 0;"> <span id="LC481" class="line" lang="mosel"> </span>
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451
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<pre style="margin: 0;">-<span id="LC451" class="line" lang="mosel"> <span class="n" style="color: #333;">Read</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">second</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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482
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<pre style="margin: 0;">+<span id="LC482" class="line" lang="mosel"> <span class="n" style="color: #333;">Read</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">second</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;"><span class="idiff left">OME</span></span><span class="p"><span class="idiff right">-</span></span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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452
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483
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<pre style="margin: 0;"> <span id="LC483" class="line" lang="mosel"> </span>
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453
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<pre style="margin: 0;">-<span id="LC453" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">series1</span> <span class="p">=</span> <span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">series</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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484
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<pre style="margin: 0;">+<span id="LC484" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">series1</span> <span class="p">=</span> <span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.<span class="idiff left right">ome.</span>tif'</span><span class="p">,</span> <span class="n" style="color: #333;">series</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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485
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<pre style="margin: 0;"> <span id="LC485" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">series1</span><span class="p">.</span><span class="n" style="color: #333;">shape</span></span>
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<pre style="margin: 0;">-<span id="LC455" class="line" lang="mosel"> <span class="p">(</span><span class="m" style="color: #099;">5</span><span class="p">,</span> <span class="m" style="color: #099;"><span class="idiff left">301</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff right">219</span></span><span class="p">)</span></span>
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486
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<pre style="margin: 0;">+<span id="LC486" class="line" lang="mosel"> <span class="p">(</span><span class="m" style="color: #099;">5</span><span class="p">,</span> <span class="m" style="color: #099;"><span class="idiff left">256</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff right">256</span></span><span class="p">)</span></span>
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456
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487
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<pre style="margin: 0;"> <span id="LC487" class="line" lang="mosel"> </span>
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457
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<pre style="margin: 0;"> <span id="LC488" class="line" lang="mosel"> <span class="n" style="color: #333;">Read</span> <span class="n" style="color: #333;">an</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">stack</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">name</span> <span class="n" style="color: #333;">pattern</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC489" class="line" lang="mosel"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -467,13 +498,46 @@ Description: Read and write TIFF(r) files</td>
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<pre style="margin: 0;"> <span id="LC498" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">shape</span></span>
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499
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<pre style="margin: 0;"> <span id="LC499" class="line" lang="mosel"> <span class="p">(</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">)</span></span>
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469
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<pre style="margin: 0;"> <span id="LC500" class="line" lang="mosel"> </span>
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470
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<pre style="margin: 0;">-<span id="LC470" class="line" lang="mosel"> <span class="n" style="color: #333;">Create</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">a<span class="idiff left">n</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">it</span>erator</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">tiles</span><span class="p">:</span></span>
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501
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<pre style="margin: 0;">+<span id="LC501" class="line" lang="mosel"> <span class="n" style="color: #333;">Create</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">a</span><span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff right">gen</span>erator</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">tiles</span><span class="p">:</span></span>
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471
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502
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<pre style="margin: 0;"> <span id="LC502" class="line" lang="mosel"> </span>
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472
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<pre style="margin: 0;"> <span id="LC503" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">def</span> <span class="n" style="color: #333;">tiles</span><span class="p">():</span></span>
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473
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<pre style="margin: 0;"> <span id="LC504" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">data</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="n" style="color: #333;">arange</span><span class="p">(</span><span class="m" style="color: #099;">3</span><span class="p">*</span><span class="m" style="color: #099;">4</span><span class="p">*</span><span class="m" style="color: #099;">16</span><span class="p">*</span><span class="m" style="color: #099;">16</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="p">=</span><span class="s1" style="color: #d14;">'uint16'</span><span class="p">).</span><span class="n" style="color: #333;">reshape</span><span class="p">((</span><span class="m" style="color: #099;">3</span><span class="p">*</span><span class="m" style="color: #099;">4</span><span class="p">,</span> <span class="m" style="color: #099;">16</span><span class="p">,</span> <span class="m" style="color: #099;">16</span><span class="p">))</span></span>
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474
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<pre style="margin: 0;"> <span id="LC505" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">i</span> <span class="k" style="font-weight: 600;">in</span> <span class="k" style="font-weight: 600;">range</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">shape</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">]):</span> <span class="n" style="color: #333;">yield</span> <span class="n" style="color: #333;">data</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span></span>
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475
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<pre style="margin: 0;"> <span id="LC506" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">tiles</span><span class="p">(),</span> <span class="n" style="color: #333;">dtype</span><span class="p">=</span><span class="s1" style="color: #d14;">'uint16'</span><span class="p">,</span> <span class="n" style="color: #333;">shape</span><span class="p">=(</span><span class="m" style="color: #099;">48</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">),</span> <span class="n" style="color: #333;">tile</span><span class="p">=(</span><span class="m" style="color: #099;">16</span><span class="p">,</span> <span class="m" style="color: #099;">16</span><span class="p">))</span></span>
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476
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507
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<pre style="margin: 0;"> <span id="LC507" class="line" lang="mosel"> </span>
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508
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<pre style="margin: 0;">+<span id="LC508" class="line" lang="mosel"> <span class="n" style="color: #333;">Write</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">tiled</span><span class="p">,</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">resolution</span><span class="p">,</span> <span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compression</span><span class="p">:</span></span>
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509
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<pre style="margin: 0;">+<span id="LC509" class="line" lang="mosel"> </span>
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<pre style="margin: 0;">+<span id="LC510" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="n" style="color: #333;">arange</span><span class="p">(</span><span class="m" style="color: #099;">1024</span><span class="p">*</span><span class="m" style="color: #099;">1024</span><span class="p">*</span><span class="m" style="color: #099;">3</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="p">=</span><span class="s1" style="color: #d14;">'uint8'</span><span class="p">).</span><span class="n" style="color: #333;">reshape</span><span class="p">((</span><span class="m" style="color: #099;">1024</span><span class="p">,</span> <span class="m" style="color: #099;">1024</span><span class="p">,</span> <span class="m" style="color: #099;">3</span><span class="p">))</span></span>
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<td class="diff-line-num new new_line" data-linenumber="511" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
511
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<pre style="margin: 0;">+<span id="LC511" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="512" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
512
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<pre style="margin: 0;">+<span id="LC512" class="line" lang="mosel"> <span class="p">...</span> <span class="k" style="font-weight: 600;">options</span> <span class="p">=</span> <span class="n" style="color: #333;">dict</span><span class="p">(</span><span class="n" style="color: #333;">tile</span><span class="p">=(</span><span class="m" style="color: #099;">256</span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">),</span> <span class="n" style="color: #333;">compress</span><span class="p">=</span><span class="s1" style="color: #d14;">'jpeg'</span><span class="p">,</span> <span class="n" style="color: #333;">metadata</span><span class="p">=</span><span class="n" style="color: #333;">None</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="513" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC513" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="p">**</span><span class="k" style="font-weight: 600;">options</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="514" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
514
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<pre style="margin: 0;">+<span id="LC514" class="line" lang="mosel"> <span class="p">...</span> <span class="p">#</span> <span class="n" style="color: #333;">save</span> <span class="n" style="color: #333;">pyramid</span> <span class="n" style="color: #333;">levels</span><span class="p">.</span> <span class="k" style="font-weight: 600;">In</span> <span class="n" style="color: #333;">production</span> <span class="n" style="color: #333;">use</span> <span class="n" style="color: #333;">resampling</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">generate</span> <span class="n" style="color: #333;">levels</span><span class="c1" style="color: #998; font-style: italic;">!</span></span>
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<td class="diff-line-num new new_line" data-linenumber="515" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
515
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<pre style="margin: 0;">+<span id="LC515" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">[::</span><span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="p">::</span><span class="m" style="color: #099;">2</span><span class="p">],</span> <span class="n" style="color: #333;">subfiletype</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="p">**</span><span class="k" style="font-weight: 600;">options</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="516" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
516
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<pre style="margin: 0;">+<span id="LC516" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">[::</span><span class="m" style="color: #099;">4</span><span class="p">,</span> <span class="p">::</span><span class="m" style="color: #099;">4</span><span class="p">],</span> <span class="n" style="color: #333;">subfiletype</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="p">**</span><span class="k" style="font-weight: 600;">options</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="517" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
517
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<pre style="margin: 0;">+<span id="LC517" class="line" lang="mosel"> </span>
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<td class="diff-line-num new new_line" data-linenumber="518" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
518
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<pre style="margin: 0;">+<span id="LC518" class="line" lang="mosel"> <span class="n" style="color: #333;">Access</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">levels</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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519
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<pre style="margin: 0;">+<span id="LC519" class="line" lang="mosel"> </span>
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<td class="diff-line-num new new_line" data-linenumber="520" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
520
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<pre style="margin: 0;">+<span id="LC520" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">baseimage</span> <span class="p">=</span> <span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="521" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
521
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<pre style="margin: 0;">+<span id="LC521" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">second_level</span> <span class="p">=</span> <span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">series</span><span class="p">=</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">level</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="522" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
522
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<pre style="margin: 0;">+<span id="LC522" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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523
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<pre style="margin: 0;">+<span id="LC523" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">baseimage</span> <span class="p">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">].</span><span class="n" style="color: #333;">asarray</span><span class="p">()</span></span>
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<td class="diff-line-num new new_line" data-linenumber="524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
524
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<pre style="margin: 0;">+<span id="LC524" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">second_level</span> <span class="p">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">].</span><span class="n" style="color: #333;">levels</span><span class="p">[</span><span class="m" style="color: #099;">1</span><span class="p">].</span><span class="n" style="color: #333;">asarray</span><span class="p">()</span></span>
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525
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<pre style="margin: 0;">+<span id="LC525" class="line" lang="mosel"> </span>
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<td class="diff-line-num new new_line" data-linenumber="526" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
526
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<pre style="margin: 0;">+<span id="LC526" class="line" lang="mosel"> <span class="n" style="color: #333;">Iterate</span> <span class="n" style="color: #333;">over</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">decode</span> <span class="n" style="color: #333;">single</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">tiles</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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527
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<pre style="margin: 0;">+<span id="LC527" class="line" lang="mosel"> </span>
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<td class="diff-line-num new new_line" data-linenumber="528" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
528
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<pre style="margin: 0;">+<span id="LC528" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="529" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
529
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<pre style="margin: 0;">+<span id="LC529" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">fh</span> <span class="p">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">filehandle</span></span>
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<td class="diff-line-num new new_line" data-linenumber="530" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
530
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<pre style="margin: 0;">+<span id="LC530" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">page</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="531" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
531
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<pre style="margin: 0;">+<span id="LC531" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">jpegtables</span> <span class="p">=</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">tags</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s1" style="color: #d14;">'JPEGTables'</span><span class="p">,</span> <span class="n" style="color: #333;">None</span><span class="p">)</span></span>
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532
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<pre style="margin: 0;">+<span id="LC532" class="line" lang="mosel"> <span class="p">...</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">jpegtables</span> <span class="n" style="color: #333;">is</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">None</span><span class="p">:</span></span>
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533
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<pre style="margin: 0;">+<span id="LC533" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">jpegtables</span> <span class="p">=</span> <span class="n" style="color: #333;">jpegtables</span><span class="p">.</span><span class="n" style="color: #333;">value</span></span>
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534
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<pre style="margin: 0;">+<span id="LC534" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">index</span><span class="p">,</span> <span class="p">(</span><span class="n" style="color: #333;">offset</span><span class="p">,</span> <span class="n" style="color: #333;">bytecount</span><span class="p">)</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">enumerate</span><span class="p">(</span></span>
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535
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<pre style="margin: 0;">+<span id="LC535" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">zip</span><span class="p">(</span><span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">dataoffsets</span><span class="p">,</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">databytecounts</span><span class="p">)</span></span>
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536
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<pre style="margin: 0;">+<span id="LC536" class="line" lang="mosel"> <span class="p">...</span> <span class="p">):</span></span>
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537
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<pre style="margin: 0;">+<span id="LC537" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="n" style="color: #333;">seek</span><span class="p">(</span><span class="n" style="color: #333;">offset</span><span class="p">)</span></span>
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538
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<pre style="margin: 0;">+<span id="LC538" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">data</span> <span class="p">=</span> <span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="nb" style="color: #0086b3;">read</span><span class="p">(</span><span class="n" style="color: #333;">bytecount</span><span class="p">)</span></span>
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539
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<pre style="margin: 0;">+<span id="LC539" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tile</span><span class="p">,</span> <span class="n" style="color: #333;">indices</span><span class="p">,</span> <span class="n" style="color: #333;">shape</span> <span class="p">=</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">decode</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">index</span><span class="p">,</span> <span class="n" style="color: #333;">jpegtables</span><span class="p">)</span></span>
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540
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<pre style="margin: 0;">+<span id="LC540" class="line" lang="mosel"> </span>
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477
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541
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<pre style="margin: 0;"> <span id="LC541" class="line" lang="mosel"><span class="n" style="color: #333;">Platform</span><span class="p">:</span> <span class="n" style="color: #333;">any</span></span>
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478
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542
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<pre style="margin: 0;"> <span id="LC542" class="line" lang="mosel"><span class="n" style="color: #333;">Classifier</span><span class="p">:</span> <span class="n" style="color: #333;">Development</span> <span class="n" style="color: #333;">Status</span> <span class="p">::</span> <span class="m" style="color: #099;">4</span> <span class="p">-</span> <span class="n" style="color: #333;">Beta</span></span>
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479
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543
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<pre style="margin: 0;"> <span id="LC543" class="line" lang="mosel"><span class="n" style="color: #333;">Classifier</span><span class="p">:</span> <span class="n" style="color: #333;">License</span> <span class="p">::</span> <span class="n" style="color: #333;">OSI</span> <span class="n" style="color: #333;">Approved</span> <span class="p">::</span> <span class="n" style="color: #333;">BSD</span> <span class="n" style="color: #333;">License</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="481" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="545" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -481,7 +545,6 @@ Classifier: Intended Audience :: Science/Research</td>
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481
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545
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<pre style="margin: 0;"> <span id="LC545" class="line" lang="mosel"><span class="n" style="color: #333;">Classifier</span><span class="p">:</span> <span class="n" style="color: #333;">Intended</span> <span class="n" style="color: #333;">Audience</span> <span class="p">::</span> <span class="n" style="color: #333;">Developers</span></span>
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482
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546
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<pre style="margin: 0;"> <span id="LC546" class="line" lang="mosel"><span class="n" style="color: #333;">Classifier</span><span class="p">:</span> <span class="n" style="color: #333;">Operating</span> <span class="nf" style="color: #900; font-weight: 600;">System</span> <span class="p">::</span> <span class="n" style="color: #333;">OS</span> <span class="n" style="color: #333;">Independent</span></span>
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483
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547
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<pre style="margin: 0;"> <span id="LC547" class="line" lang="mosel"><span class="n" style="color: #333;">Classifier</span><span class="p">:</span> <span class="n" style="color: #333;">Programming</span> <span class="n" style="color: #333;">Language</span> <span class="p">::</span> <span class="n" style="color: #333;">Python</span> <span class="p">::</span> <span class="m" style="color: #099;">3</span> <span class="p">::</span> <span class="n" style="color: #333;">Only</span></span>
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484
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<pre style="margin: 0;">-<span id="LC484" class="line" lang="mosel"><span class="n" style="color: #333;">Classifier</span><span class="p">:</span> <span class="n" style="color: #333;">Programming</span> <span class="n" style="color: #333;">Language</span> <span class="p">::</span> <span class="n" style="color: #333;">Python</span> <span class="p">::</span> <span class="m" style="color: #099;">3.6</span></span>
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485
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548
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<pre style="margin: 0;"> <span id="LC548" class="line" lang="mosel"><span class="n" style="color: #333;">Classifier</span><span class="p">:</span> <span class="n" style="color: #333;">Programming</span> <span class="n" style="color: #333;">Language</span> <span class="p">::</span> <span class="n" style="color: #333;">Python</span> <span class="p">::</span> <span class="m" style="color: #099;">3.7</span></span>
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486
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549
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<pre style="margin: 0;"> <span id="LC549" class="line" lang="mosel"><span class="n" style="color: #333;">Classifier</span><span class="p">:</span> <span class="n" style="color: #333;">Programming</span> <span class="n" style="color: #333;">Language</span> <span class="p">::</span> <span class="n" style="color: #333;">Python</span> <span class="p">::</span> <span class="m" style="color: #099;">3.8</span></span>
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487
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550
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<pre style="margin: 0;"> <span id="LC550" class="line" lang="mosel"><span class="n" style="color: #333;">Classifier</span><span class="p">:</span> <span class="n" style="color: #333;">Programming</span> <span class="n" style="color: #333;">Language</span> <span class="p">::</span> <span class="n" style="color: #333;">Python</span> <span class="p">::</span> <span class="m" style="color: #099;">3.9</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8,10 +8,11 @@ Tifffile is a Python library to</td>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="mosel"><span class="n" style="color: #333;">Image</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="nb" style="color: #0086b3;">read</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">TIFF</span><span class="p">,</span> <span class="n" style="color: #333;">BigTIFF</span><span class="p">,</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span><span class="p">,</span> <span class="n" style="color: #333;">STK</span><span class="p">,</span> <span class="n" style="color: #333;">LSM</span><span class="p">,</span> <span class="n" style="color: #333;">SGI</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="mosel"><span class="n" style="color: #333;">NIHImage</span><span class="p">,</span> <span class="n" style="color: #333;">ImageJ</span><span class="p">,</span> <span class="n" style="color: #333;">MicroManager</span><span class="p">,</span> <span class="n" style="color: #333;">FluoView</span><span class="p">,</span> <span class="n" style="color: #333;">ScanImage</span><span class="p">,</span> <span class="n" style="color: #333;">SEQ</span><span class="p">,</span> <span class="n" style="color: #333;">GEL</span><span class="p">,</span> <span class="n" style="color: #333;">SVS</span><span class="p">,</span> <span class="n" style="color: #333;">SCN</span><span class="p">,</span> <span class="n" style="color: #333;">SIS</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="mosel"><span class="n" style="color: #333;">ZIF</span><span class="p"><span class="idiff left">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">QPTIFF</span></span><span class="p">,</span> <span class="n" style="color: #333;">NDPI</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">GeoTIFF</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="mosel"><span class="n" style="color: #333;">ZIF</span><span class="idiff left"> </span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">Zoomable</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">Image</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">File</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">Format</span></span><span class="p"><span class="idiff">),</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">QPTIFF</span></span><span class="idiff"> </span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">QPI</span></span><span class="p"><span class="idiff right">)</span>,</span> <span class="n" style="color: #333;">NDPI</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">GeoTIFF</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="mosel"></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="mosel"><span class="n" style="color: #333;">Numpy</span> <span class="n" style="color: #333;">arrays</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">written</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">TIFF</span><span class="p">,</span> <span class="n" style="color: #333;">BigTIFF</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">ImageJ</span> <span class="n" style="color: #333;">hyperstack</span> <span class="n" style="color: #333;">compatible</span></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="mosel"><span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">page</span><span class="p">,</span> <span class="n" style="color: #333;">memory</span><span class="p">-</span><span class="n" style="color: #333;">mappable</span><span class="p">,</span> <span class="n" style="color: #333;">tiled</span><span class="p">,</span> <span class="n" style="color: #333;">predicted</span><span class="p">,</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">form</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="mosel"><span class="n" style="color: #333;">Numpy</span> <span class="n" style="color: #333;">arrays</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">written</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">TIFF</span><span class="p">,</span> <span class="n" style="color: #333;">BigTIFF</span><span class="p">,</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">ImageJ</span> <span class="n" style="color: #333;">hyperstack</span></span>
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="mosel"><span class="n" style="color: #333;">compatible</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">page</span><span class="p">,</span> <span class="n" style="color: #333;">memory</span><span class="p">-</span><span class="n" style="color: #333;">mappable</span><span class="p">,</span> <span class="n" style="color: #333;">tiled</span><span class="p">,</span> <span class="n" style="color: #333;">predicted</span><span class="p">,</span> <span class="k" style="font-weight: 600;">or</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="mosel"><span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">form</span><span class="p">.</span></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="mosel"><span class="n" style="color: #333;">A</span> <span class="n" style="color: #333;">subset</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">specification</span> <span class="n" style="color: #333;">is</span> <span class="n" style="color: #333;">supported</span><span class="p">,</span> <span class="n" style="color: #333;">mainly</span> <span class="n" style="color: #333;">uncompressed</span> <span class="k" style="font-weight: 600;">and</span></span>
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<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="mosel"><span class="n" style="color: #333;">losslessly</span> <span class="n" style="color: #333;">compressed</span> <span class="m" style="color: #099;">8</span><span class="p">,</span> <span class="m" style="color: #099;">16</span><span class="p">,</span> <span class="m" style="color: #099;">32</span> <span class="k" style="font-weight: 600;">and</span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="k" style="font-weight: 600;">integer</span><span class="p">,</span> <span class="m" style="color: #099;">16</span><span class="p">,</span> <span class="m" style="color: #099;">32</span> <span class="k" style="font-weight: 600;">and</span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">float</span><span class="p">,</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -26,7 +27,7 @@ STK, LSM, FluoView, SGI, SEQ, GEL, QPTIFF, NDPI, and OME-TIFF, are custom</td>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="mosel"><span class="n" style="color: #333;">extensions</span> <span class="n" style="color: #333;">defined</span> <span class="n" style="color: #333;">by</span> <span class="n" style="color: #333;">Molecular</span> <span class="n" style="color: #333;">Devices</span> <span class="p">(</span><span class="n" style="color: #333;">Universal</span> <span class="n" style="color: #333;">Imaging</span> <span class="n" style="color: #333;">Corporation</span><span class="p">),</span></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="mosel"><span class="n" style="color: #333;">Carl</span> <span class="n" style="color: #333;">Zeiss</span> <span class="n" style="color: #333;">MicroImaging</span><span class="p">,</span> <span class="n" style="color: #333;">Olympus</span><span class="p">,</span> <span class="n" style="color: #333;">Silicon</span> <span class="n" style="color: #333;">Graphics</span> <span class="n" style="color: #333;">International</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="mosel"><span class="n" style="color: #333;">Media</span> <span class="n" style="color: #333;">Cybernetics</span><span class="p">,</span> <span class="n" style="color: #333;">Molecular</span> <span class="n" style="color: #333;">Dynamics</span><span class="p">,</span> <span class="n" style="color: #333;">PerkinElmer</span><span class="p">,</span> <span class="n" style="color: #333;">Hamamatsu</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">the</span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="mosel"><span class="n" style="color: #333;">Open</span> <span class="n" style="color: #333;">Microscopy</span> <span class="n" style="color: #333;">Environment</span> <span class="n" style="color: #333;">consortium</span> <span class="n" style="color: #333;">respectively</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="mosel"><span class="n" style="color: #333;">Open</span> <span class="n" style="color: #333;">Microscopy</span> <span class="n" style="color: #333;">Environment</span> <span class="n" style="color: #333;">consortium</span><span class="p"><span class="idiff left right">,</span></span> <span class="n" style="color: #333;">respectively</span><span class="p">.</span></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="mosel"><span class="n" style="color: #333;">For</span> <span class="nf" style="color: #900; font-weight: 600;">command</span> <span class="n" style="color: #333;">line</span> <span class="n" style="color: #333;">usage</span> <span class="nf" style="color: #900; font-weight: 600;">run</span> <span class="p">``</span><span class="n" style="color: #333;">python</span> <span class="p">-</span><span class="n" style="color: #333;">m</span> <span class="n" style="color: #333;">tifffile</span> <span class="p">--</span><span class="n" style="color: #333;">help</span><span class="p">``</span></span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="mosel"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -38,23 +39,44 @@ For command line usage run ``python -m tifffile --help``</td>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="mosel"><span class="p">:</span><span class="n" style="color: #333;">License</span><span class="p">:</span> <span class="n" style="color: #333;">BSD</span> <span class="m" style="color: #099;">3</span><span class="p">-</span><span class="n" style="color: #333;">Clause</span></span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="mosel"></span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="mosel"><span class="p">:</span><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">2020.<span class="idiff left right">6.3</span></span></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="mosel"><span class="p">:</span><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">2020.<span class="idiff left right">7.17</span></span></span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="mosel"><span class="k" style="font-weight: 600;">Requirements</span></span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="mosel"><span class="p">------------</span></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="mosel"><span class="n" style="color: #333;">This</span> <span class="n" style="color: #333;">release</span> <span class="n" style="color: #333;">has</span> <span class="n" style="color: #333;">been</span> <span class="n" style="color: #333;">tested</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">following</span> <span class="k" style="font-weight: 600;">requirements</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">dependencies</span></span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">other</span> <span class="n" style="color: #333;">versions</span> <span class="n" style="color: #333;">may</span> <span class="n" style="color: #333;">work</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="mosel"></span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="mosel"><span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">CPython</span> <span class="m" style="color: #099;">3.<span class="idiff left">6.8</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">3.7.7</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff right">3.8.3</span></span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">python</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="mosel"><span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Numpy</span> <span class="m" style="color: #099;">1.1<span class="idiff left">6.6</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">1.18.4</span></span><span class="idiff"> </span><span class="p"><span class="idiff"><</span></span><span class="n" style="color: #333;"><span class="idiff">https</span></span><span class="p"><span class="idiff">://</span></span><span class="n" style="color: #333;"><span class="idiff">www</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">numpy</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff right">org</span></span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="mosel"><span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">CPython</span> <span class="m" style="color: #099;">3.<span class="idiff left">7.8</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">3.8.4</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">3.9.0</span></span><span class="n" style="color: #333;"><span class="idiff right">b4</span></span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">python</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="mosel"><span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Numpy</span> <span class="m" style="color: #099;">1.1<span class="idiff left">8.5</span></span><span class="idiff"> </span><span class="p"><span class="idiff"><</span></span><span class="n" style="color: #333;"><span class="idiff">https</span></span><span class="p"><span class="idiff">://</span></span><span class="n" style="color: #333;"><span class="idiff">pypi</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">org</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">project</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">numpy</span></span><span class="p"><span class="idiff right">/</span>>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="mosel"><span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Imagecodecs</span> <span class="m" style="color: #099;">2020.5.30</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">imagecodecs</span><span class="p">/>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="mosel"> <span class="p">(</span><span class="n" style="color: #333;">required</span> <span class="n" style="color: #333;">only</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">encoding</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">decoding</span> <span class="n" style="color: #333;">LZW</span><span class="p">,</span> <span class="n" style="color: #333;">JPEG</span><span class="p">,</span> <span class="n" style="color: #333;">etc</span><span class="p">.)</span></span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="mosel"><span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Matplotlib</span> <span class="m" style="color: #099;">3.1</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">matplotlib</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">>`</span><span class="n" style="color: #333;">_</span> <span class="p">(</span><span class="n" style="color: #333;">required</span> <span class="n" style="color: #333;">only</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">plotting</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="mosel"><span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Matplotlib</span> <span class="m" style="color: #099;">3.2.2</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">matplotlib</span><span class="p">/>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="mosel"> <span class="p">(</span><span class="n" style="color: #333;">required</span> <span class="n" style="color: #333;">only</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">plotting</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="mosel"><span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Lxml</span> <span class="m" style="color: #099;">4.5.2</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">github</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">lxml</span><span class="p">/</span><span class="n" style="color: #333;">lxml</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="mosel"> <span class="p">(</span><span class="n" style="color: #333;">required</span> <span class="n" style="color: #333;">only</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">validating</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">printing</span> <span class="n" style="color: #333;">XML</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="mosel"><span class="n" style="color: #333;">Revisions</span></span>
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55
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="mosel"><span class="p">---------</span></span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="mosel"><span class="m" style="color: #099;">2020.7.17</span></span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="mosel"> <span class="n" style="color: #333;">Pass</span> <span class="m" style="color: #099;">3022</span> <span class="n" style="color: #333;">tests</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="mosel"> <span class="n" style="color: #333;">Initial</span> <span class="n" style="color: #333;">support</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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63
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="mosel"> <span class="n" style="color: #333;">Return</span> <span class="n" style="color: #333;">samples</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">separate</span> <span class="n" style="color: #333;">dimension</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">OME</span> <span class="n" style="color: #333;">series</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">modulo</span> <span class="n" style="color: #333;">dimensions</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">multiple</span> <span class="n" style="color: #333;">OME</span> <span class="n" style="color: #333;">series</span><span class="p">.</span></span>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">some</span> <span class="n" style="color: #333;">test</span> <span class="n" style="color: #333;">errors</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">big</span> <span class="n" style="color: #333;">endian</span> <span class="n" style="color: #333;">systems</span> <span class="p">(#</span><span class="m" style="color: #099;">18</span><span class="p">).</span></span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">BytesWarning</span><span class="p">.</span></span>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">pass</span> <span class="n" style="color: #333;">TIFF</span><span class="p">.</span><span class="n" style="color: #333;">PREDICTOR</span> <span class="n" style="color: #333;">values</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="68" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="mosel"><span class="m" style="color: #099;">2020.7.4</span></span>
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<td class="diff-line-num new new_line" data-linenumber="69" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="mosel"> <span class="n" style="color: #333;">Deprecate</span> <span class="n" style="color: #333;">support</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">Python</span> <span class="m" style="color: #099;">3.6</span> <span class="p">(</span><span class="n" style="color: #333;">NEP</span> <span class="m" style="color: #099;">29</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="70" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="mosel"> <span class="n" style="color: #333;">Move</span> <span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">subresolution</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">TiffPageSeries</span><span class="p">.</span><span class="n" style="color: #333;">levels</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="71" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="mosel"> <span class="n" style="color: #333;">Add</span> <span class="n" style="color: #333;">parser</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">SVS</span><span class="p">,</span> <span class="n" style="color: #333;">SCN</span><span class="p">,</span> <span class="n" style="color: #333;">NDPI</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">QPI</span> <span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">series</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="72" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="mosel"> <span class="n" style="color: #333;">Read</span> <span class="n" style="color: #333;">single</span><span class="p">-</span><span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">pyramids</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="73" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="mosel"> <span class="n" style="color: #333;">Read</span> <span class="n" style="color: #333;">NDPI</span> <span class="n" style="color: #333;">files</span> <span class="p">></span> <span class="m" style="color: #099;">4</span> <span class="n" style="color: #333;">GB</span> <span class="p">(#</span><span class="m" style="color: #099;">15</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="74" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Include</span> <span class="n" style="color: #333;">SubIFDs</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">generic</span> <span class="n" style="color: #333;">series</span><span class="p">.</span></span>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="mosel"> <span class="n" style="color: #333;">Preliminary</span> <span class="n" style="color: #333;">support</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">packed</span> <span class="k" style="font-weight: 600;">integer</span> <span class="n" style="color: #333;">arrays</span> <span class="p">(#</span><span class="m" style="color: #099;">11</span><span class="p">,</span> <span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="76" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="mosel"> <span class="n" style="color: #333;">Read</span> <span class="n" style="color: #333;">more</span> <span class="n" style="color: #333;">LSM</span> <span class="n" style="color: #333;">info</span> <span class="n" style="color: #333;">subrecords</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="77" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">missing</span> <span class="n" style="color: #333;">ReferenceBlackWhite</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">YCbCr</span> <span class="n" style="color: #333;">photometrics</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="78" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">reading</span> <span class="n" style="color: #333;">lossless</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">DNG</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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56
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79
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="mosel"><span class="m" style="color: #099;">2020.6.3</span></span>
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57
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="mosel"> <span class="n" style="color: #333;">Pass</span> <span class="m" style="color: #099;">2908</span> <span class="n" style="color: #333;">tests</span><span class="p">.</span></span>
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58
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80
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="mosel"> <span class="n" style="color: #333;">Support</span> <span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">PathLike</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">names</span> <span class="p">(#</span><span class="m" style="color: #099;">9</span><span class="p">).</span></span>
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59
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81
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="mosel"><span class="m" style="color: #099;">2020.5.30</span></span>
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60
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82
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="mosel"> <span class="n" style="color: #333;">Re</span><span class="p">-</span><span class="n" style="color: #333;">add</span> <span class="n" style="color: #333;">pure</span> <span class="n" style="color: #333;">Python</span> <span class="n" style="color: #333;">PackBits</span> <span class="n" style="color: #333;">decoder</span><span class="p">.</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="208" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="230" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -208,10 +230,11 @@ The API is not stable yet and might change between revisions.</td>
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208
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230
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="mosel"></span>
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209
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<pre style="margin: 0;"> <span id="LC231" class="line" lang="mosel"><span class="n" style="color: #333;">Tested</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">little</span><span class="p">-</span><span class="n" style="color: #333;">endian</span> <span class="n" style="color: #333;">platforms</span> <span class="n" style="color: #333;">only</span><span class="p">.</span></span>
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210
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232
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<pre style="margin: 0;"> <span id="LC232" class="line" lang="mosel"></span>
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211
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<pre style="margin: 0;">-<span id="LC211" class="line" lang="mosel"><span class="n" style="color: #333;">Python</span> <span class="m" style="color: #099;">32</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">versions</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">deprecated</span><span class="p">.</span></span>
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233
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<pre style="margin: 0;">+<span id="LC233" class="line" lang="mosel"><span class="n" style="color: #333;">Python</span> <span class="m" style="color: #099;">32</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">versions</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">deprecated</span><span class="p">.</span><span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff">Python</span></span><span class="idiff"> </span><span class="p"><span class="idiff"><=</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">3.6</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">are</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">no</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">longer</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">supported</span></span><span class="p"><span class="idiff right">.</span></span></span>
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212
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234
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="mosel"></span>
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213
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<td class="diff-line-num new_line" data-linenumber="235" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
235
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<pre style="margin: 0;"> <span id="LC235" class="line" lang="mosel"><span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">relies</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">the</span> <span class="p">`</span><span class="n" style="color: #333;">imagecodecs</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">imagecodecs</span><span class="p">/>`</span><span class="n" style="color: #333;">_</span></span>
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214
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<td class="diff-line-num new_line old" data-linenumber="236" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC214" class="line" lang="mosel"><span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">encoding</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">decoding</span> <span class="n" style="color: #333;">LZW</span><span class="p">,</span> <span class="n" style="color: #333;">JPEG</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">other</span> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">images</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="236" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
236
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<pre style="margin: 0;">+<span id="LC236" class="line" lang="mosel"><span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">encoding</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">decoding</span> <span class="n" style="color: #333;">LZW</span><span class="p">,</span> <span class="n" style="color: #333;">JPEG</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">other</span> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">image</span></span>
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<td class="diff-line-num new new_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
237
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<pre style="margin: 0;">+<span id="LC237" class="line" lang="mosel"><span class="n" style="color: #333;">segments</span><span class="p">.</span></span>
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215
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238
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<pre style="margin: 0;"> <span id="LC238" class="line" lang="mosel"></span>
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216
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239
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<pre style="margin: 0;"> <span id="LC239" class="line" lang="mosel"><span class="n" style="color: #333;">Several</span> <span class="n" style="color: #333;">TIFF</span><span class="p">-</span><span class="n" style="color: #333;">like</span> <span class="n" style="color: #333;">formats</span> <span class="k" style="font-weight: 600;">do</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">strictly</span> <span class="n" style="color: #333;">adhere</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">TIFF6</span> <span class="n" style="color: #333;">specification</span><span class="p">,</span></span>
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217
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240
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="mosel"><span class="n" style="color: #333;">some</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">which</span> <span class="n" style="color: #333;">allow</span> <span class="n" style="color: #333;">file</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">data</span> <span class="n" style="color: #333;">sizes</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">exceed</span> <span class="n" style="color: #333;">the</span> <span class="m" style="color: #099;">4</span> <span class="n" style="color: #333;">GB</span> <span class="n" style="color: #333;">limit</span><span class="p">:</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="228" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="251" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -228,21 +251,23 @@ some of which allow file or data sizes to exceed the 4 GB limit:</td>
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228
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251
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<pre style="margin: 0;"> <span id="LC251" class="line" lang="mosel"> <span class="n" style="color: #333;">files</span><span class="p">.</span> <span class="n" style="color: #333;">The</span> <span class="m" style="color: #099;">8</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">UTF</span><span class="p">-</span><span class="m" style="color: #099;">8</span> <span class="n" style="color: #333;">encoded</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">XML</span> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">found</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">ImageDescription</span></span>
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<td class="diff-line-num old_line" data-linenumber="229" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
229
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<td class="diff-line-num new_line" data-linenumber="252" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
252
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<pre style="margin: 0;"> <span id="LC252" class="line" lang="mosel"> <span class="n" style="color: #333;">tag</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">first</span> <span class="n" style="color: #333;">IFD</span> <span class="n" style="color: #333;">defines</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">position</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">IFDs</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">high</span></span>
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230
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<td class="diff-line-num new_line" data-linenumber="253" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
253
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<pre style="margin: 0;"> <span id="LC253" class="line" lang="mosel"> <span class="n" style="color: #333;">dimensional</span> <span class="n" style="color: #333;">data</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">files</span><span class="p">,</span> <span class="n" style="color: #333;">except</span> <span class="n" style="color: #333;">when</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">XML</span></span>
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<td class="diff-line-num old old_line" data-linenumber="231" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
231
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<td class="diff-line-num new_line old" data-linenumber="254" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC231" class="line" lang="mosel"> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">stored</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">separate</span> <span class="n" style="color: #333;">file</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="254" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
254
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<pre style="margin: 0;">+<span id="LC254" class="line" lang="mosel"> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">stored</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">separate</span> <span class="n" style="color: #333;">file</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">numpy</span> <span class="n" style="color: #333;">arrays</span></span>
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<td class="diff-line-num new new_line" data-linenumber="255" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
255
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<pre style="margin: 0;">+<span id="LC255" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">single</span><span class="p">-</span><span class="n" style="color: #333;">file</span><span class="p">,</span> <span class="n" style="color: #333;">non</span><span class="p">-</span><span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span><span class="p">.</span></span>
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232
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<td class="diff-line-num new_line" data-linenumber="256" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
256
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<pre style="margin: 0;"> <span id="LC256" class="line" lang="mosel"><span class="p">*</span> <span class="p">*</span><span class="n" style="color: #333;">LSM</span><span class="p">*</span> <span class="n" style="color: #333;">stores</span> <span class="n" style="color: #333;">all</span> <span class="n" style="color: #333;">IFDs</span> <span class="n" style="color: #333;">below</span> <span class="m" style="color: #099;">4</span> <span class="n" style="color: #333;">GB</span> <span class="n" style="color: #333;">but</span> <span class="n" style="color: #333;">wraps</span> <span class="n" style="color: #333;">around</span> <span class="m" style="color: #099;">32</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">StripOffsets</span><span class="p">.</span></span>
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<td class="diff-line-num old_line" data-linenumber="233" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
233
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<td class="diff-line-num new_line" data-linenumber="257" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
257
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<pre style="margin: 0;"> <span id="LC257" class="line" lang="mosel"> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">StripOffsets</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">each</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">position</span> <span class="n" style="color: #333;">require</span> <span class="n" style="color: #333;">separate</span> <span class="n" style="color: #333;">unwrapping</span><span class="p">.</span></span>
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234
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<td class="diff-line-num new_line" data-linenumber="258" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
258
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<pre style="margin: 0;"> <span id="LC258" class="line" lang="mosel"> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">StripByteCounts</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">contains</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">number</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">bytes</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">uncompressed</span></span>
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<td class="diff-line-num old_line" data-linenumber="235" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
235
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<td class="diff-line-num new_line" data-linenumber="259" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
259
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<pre style="margin: 0;"> <span id="LC259" class="line" lang="mosel"> <span class="n" style="color: #333;">data</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">large</span> <span class="n" style="color: #333;">LSM</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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<td class="diff-line-num old_line" data-linenumber="236" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
236
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<td class="diff-line-num new_line" data-linenumber="260" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
260
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<pre style="margin: 0;"> <span id="LC260" class="line" lang="mosel"><span class="p">*</span> <span class="p">*</span><span class="n" style="color: #333;">NDPI</span><span class="p">*</span> <span class="k" style="font-weight: 600;">uses</span> <span class="n" style="color: #333;">some</span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">offsets</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">header</span><span class="p">,</span> <span class="n" style="color: #333;">IFD</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">structures</span><span class="p">.</span></span>
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<td class="diff-line-num old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
237
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<td class="diff-line-num new_line" data-linenumber="261" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
261
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<pre style="margin: 0;"> <span id="LC261" class="line" lang="mosel"> <span class="n" style="color: #333;">Tag</span> <span class="n" style="color: #333;">values</span><span class="p">/</span><span class="n" style="color: #333;">offsets</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">corrected</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">high</span> <span class="n" style="color: #333;">bits</span> <span class="n" style="color: #333;">stored</span> <span class="n" style="color: #333;">after</span> <span class="n" style="color: #333;">IFD</span></span>
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<td class="diff-line-num old old_line" data-linenumber="238" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
238
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<td class="diff-line-num new_line old" data-linenumber="262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC238" class="line" lang="mosel"> <span class="n" style="color: #333;">structures</span><span class="p">.</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">tiles</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">dimensions</span> <span class="p">></span> <span class="m" style="color: #099;">65536</span> <span class="n" style="color: #333;">are</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">readable</span></span>
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<td class="diff-line-num old old_line" data-linenumber="239" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
239
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<td class="diff-line-num new_line old" data-linenumber="262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC239" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">libjpeg</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">NDPI</span> <span class="n" style="color: #333;">files</span> <span class="p"><</span> <span class="m" style="color: #099;">4</span> <span class="n" style="color: #333;">GB</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">decompress</span> <span class="n" style="color: #333;">large</span> <span class="n" style="color: #333;">JPEG</span></span>
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<td class="diff-line-num old old_line" data-linenumber="240" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
240
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<td class="diff-line-num new_line old" data-linenumber="262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC240" class="line" lang="mosel"> <span class="n" style="color: #333;">tiles</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">imagecodecs</span> <span class="n" style="color: #333;">library</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">Windows</span><span class="p">.</span></span>
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<td class="diff-line-num new old_line" data-linenumber="241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
262
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<pre style="margin: 0;">+<span id="LC262" class="line" lang="mosel"> <span class="n" style="color: #333;">structures</span><span class="p">.</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">segments</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">dimensions</span> <span class="p">></span><span class="m" style="color: #099;">65536</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">missing</span></span>
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<td class="diff-line-num new old_line" data-linenumber="241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="263" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
263
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<pre style="margin: 0;">+<span id="LC263" class="line" lang="mosel"> <span class="n" style="color: #333;">restart</span> <span class="n" style="color: #333;">markers</span> <span class="n" style="color: #333;">are</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">readable</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">libjpeg</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">NDPI</span></span>
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<td class="diff-line-num new old_line" data-linenumber="241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="264" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
264
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<pre style="margin: 0;">+<span id="LC264" class="line" lang="mosel"> <span class="n" style="color: #333;">files</span> <span class="p">></span> <span class="m" style="color: #099;">4</span> <span class="n" style="color: #333;">GB</span><span class="p">.</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">segments</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">restart</span> <span class="n" style="color: #333;">markers</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">dimensions</span> <span class="p">></span><span class="m" style="color: #099;">65536</span> <span class="n" style="color: #333;">can</span></span>
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<td class="diff-line-num new old_line" data-linenumber="241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="265" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
265
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<pre style="margin: 0;">+<span id="LC265" class="line" lang="mosel"> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">decoded</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">imagecodecs</span> <span class="n" style="color: #333;">library</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">Windows</span><span class="p">.</span></span>
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<td class="diff-line-num old_line" data-linenumber="241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
241
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<td class="diff-line-num new_line" data-linenumber="266" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
266
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<pre style="margin: 0;"> <span id="LC266" class="line" lang="mosel"><span class="p">*</span> <span class="p">*</span><span class="n" style="color: #333;">ScanImage</span><span class="p">*</span> <span class="n" style="color: #333;">optionally</span> <span class="n" style="color: #333;">allows</span> <span class="n" style="color: #333;">corrupt</span> <span class="n" style="color: #333;">non</span><span class="p">-</span><span class="n" style="color: #333;">BigTIFF</span> <span class="n" style="color: #333;">files</span> <span class="p">></span> <span class="m" style="color: #099;">2</span> <span class="n" style="color: #333;">GB</span><span class="p">.</span> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">values</span></span>
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<td class="diff-line-num old_line" data-linenumber="242" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
242
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<td class="diff-line-num new_line" data-linenumber="267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
267
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<pre style="margin: 0;"> <span id="LC267" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">StripOffsets</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">StripByteCounts</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">recovered</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">constant</span></span>
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243
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268
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<pre style="margin: 0;"> <span id="LC268" class="line" lang="mosel"> <span class="n" style="color: #333;">differences</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">offsets</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">IFD</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">values</span> <span class="n" style="color: #333;">throughout</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">file</span><span class="p">.</span></span>
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244
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<pre style="margin: 0;">-<span id="LC244" class="line" lang="mosel"> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">such</span> <span class="n" style="color: #333;">files</span> <span class="n" style="color: #333;"><span class="idiff left">on</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">Python</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">3</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">if</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">the</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">image</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">data</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">are</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">stored</span></span></span>
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245
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<td class="diff-line-num new_line old" data-linenumber="269" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC245" class="line" lang="mosel"> <span class="n" style="color: #333;"><span class="idiff left">contiguously</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">in</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">each</span> <span class="n" style="color: #333;">page</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="269" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
269
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<pre style="margin: 0;">+<span id="LC269" class="line" lang="mosel"> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">such</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;"><span class="idiff left">if</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">the</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">image</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">data</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">are</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">stored</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">contiguously</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff right">in</span></span></span>
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<td class="diff-line-num new new_line" data-linenumber="270" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
270
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<pre style="margin: 0;">+<span id="LC270" class="line" lang="mosel"> <span class="n" style="color: #333;">each</span> <span class="n" style="color: #333;">page</span><span class="p">.</span></span>
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246
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<td class="diff-line-num new_line" data-linenumber="271" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
271
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<pre style="margin: 0;"> <span id="LC271" class="line" lang="mosel"><span class="p">*</span> <span class="p">*</span><span class="n" style="color: #333;">GeoTIFF</span><span class="p">*</span> <span class="n" style="color: #333;">sparse</span> <span class="n" style="color: #333;">files</span> <span class="n" style="color: #333;">allow</span> <span class="n" style="color: #333;">strip</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">tile</span> <span class="n" style="color: #333;">offsets</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">byte</span> <span class="n" style="color: #333;">counts</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">be</span> <span class="m" style="color: #099;">0.</span></span>
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247
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272
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<pre style="margin: 0;"> <span id="LC272" class="line" lang="mosel"> <span class="n" style="color: #333;">Such</span> <span class="n" style="color: #333;">segments</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">implicitly</span> <span class="k" style="font-weight: 600;">set</span> <span class="k" style="font-weight: 600;">to</span> <span class="m" style="color: #099;">0</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">NODATA</span> <span class="n" style="color: #333;">value</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">reading</span><span class="p">.</span></span>
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248
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273
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<pre style="margin: 0;"> <span id="LC273" class="line" lang="mosel"> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">GeoTIFF</span> <span class="n" style="color: #333;">sparse</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="275" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -275,29 +300,33 @@ Some libraries are using tifffile to write OME-TIFF files:</td>
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275
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300
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<pre style="margin: 0;"> <span id="LC300" class="line" lang="mosel"></span>
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276
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301
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<pre style="margin: 0;"> <span id="LC301" class="line" lang="mosel"><span class="n" style="color: #333;">References</span></span>
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277
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302
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<pre style="margin: 0;"> <span id="LC302" class="line" lang="mosel"><span class="p">----------</span></span>
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278
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<pre style="margin: 0;">-<span id="LC278" class="line" lang="mosel"><span class="m" style="color: #099;">1.</span> <span class="n" style="color: #333;">TIFF</span> <span class="m" style="color: #099;">6.0</span> <span class="n" style="color: #333;">Specification</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">Supplements</span><span class="p">.</span> <span class="n" style="color: #333;">Adobe</span> <span class="n" style="color: #333;">Systems</span> <span class="n" style="color: #333;">Incorporated</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="279" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
279
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<pre style="margin: 0;">-<span id="LC279" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">adobe</span><span class="p">.</span><span class="n" style="color: #333;">io</span><span class="p">/</span><span class="n" style="color: #333;">open</span><span class="p">/</span><span class="n" style="color: #333;">standards</span><span class="p">/</span><span class="n" style="color: #333;">TIFF</span><span class="p">.</span><span class="n" style="color: #333;">html</span></span>
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280
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<pre style="margin: 0;">-<span id="LC280" class="line" lang="mosel"><span class="m" style="color: #099;">2.</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span> <span class="n" style="color: #333;">FAQ</span><span class="p">.</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">awaresystems</span><span class="p">.</span><span class="n" style="color: #333;">be</span><span class="p">/</span><span class="n" style="color: #333;">imaging</span><span class="p">/</span><span class="n" style="color: #333;">tiff</span><span class="p">/</span><span class="n" style="color: #333;">faq</span><span class="p">.</span><span class="n" style="color: #333;">html</span></span>
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281
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<pre style="margin: 0;">-<span id="LC281" class="line" lang="mosel"><span class="m" style="color: #099;">3.</span> <span class="n" style="color: #333;">MetaMorph</span> <span class="n" style="color: #333;">Stack</span> <span class="p">(</span><span class="n" style="color: #333;">STK</span><span class="p">)</span> <span class="n" style="color: #333;">Image</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span><span class="p">.</span></span>
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282
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<pre style="margin: 0;">-<span id="LC282" class="line" lang="mosel"> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">mdc</span><span class="p">.</span><span class="n" style="color: #333;">custhelp</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">app</span><span class="p">/</span><span class="n" style="color: #333;">answers</span><span class="p">/</span><span class="n" style="color: #333;">detail</span><span class="p">/</span><span class="n" style="color: #333;">a_id</span><span class="p">/</span><span class="m" style="color: #099;">18862</span></span>
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<pre style="margin: 0;">-<span id="LC283" class="line" lang="mosel"><span class="m" style="color: #099;">4.</span> <span class="n" style="color: #333;">Image</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span> <span class="n" style="color: #333;">Description</span> <span class="n" style="color: #333;">LSM</span> <span class="m" style="color: #099;">5</span><span class="p">/</span><span class="m" style="color: #099;">7</span> <span class="n" style="color: #333;">Release</span> <span class="m" style="color: #099;">6.0</span> <span class="p">(</span><span class="n" style="color: #333;">ZEN</span> <span class="m" style="color: #099;">2010</span><span class="p">).</span></span>
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<pre style="margin: 0;">-<span id="LC284" class="line" lang="mosel"> <span class="n" style="color: #333;">Carl</span> <span class="n" style="color: #333;">Zeiss</span> <span class="n" style="color: #333;">MicroImaging</span> <span class="n" style="color: #333;">GmbH</span><span class="p">.</span> <span class="n" style="color: #333;">BioSciences</span><span class="p">.</span> <span class="n" style="color: #333;">May</span> <span class="m" style="color: #099;">10</span><span class="p">,</span> <span class="m" style="color: #099;">2011</span></span>
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285
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<pre style="margin: 0;">-<span id="LC285" class="line" lang="mosel"><span class="m" style="color: #099;">5.</span> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">format</span><span class="p">.</span></span>
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<pre style="margin: 0;">-<span id="LC286" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">docs</span><span class="p">.</span><span class="n" style="color: #333;">openmicroscopy</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">ome</span><span class="p">-</span><span class="k" style="font-weight: 600;">model</span><span class="p">/</span><span class="m" style="color: #099;">5.6.4</span><span class="p">/</span><span class="n" style="color: #333;">ome</span><span class="p">-</span><span class="n" style="color: #333;">tiff</span><span class="p">/</span></span>
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<pre style="margin: 0;">-<span id="LC287" class="line" lang="mosel"><span class="m" style="color: #099;">6.</span> <span class="n" style="color: #333;">UltraQuant</span><span class="p">(</span><span class="n" style="color: #333;">r</span><span class="p">)</span> <span class="k" style="font-weight: 600;">Version</span> <span class="m" style="color: #099;">6.0</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">Windows</span> <span class="n" style="color: #333;">Start</span><span class="p">-</span><span class="n" style="color: #333;">Up</span> <span class="n" style="color: #333;">Guide</span><span class="p">.</span></span>
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288
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<pre style="margin: 0;">-<span id="LC288" class="line" lang="mosel"> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">ultralum</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">images</span><span class="p">%</span><span class="m" style="color: #099;">20ul</span><span class="n" style="color: #333;">tralum</span><span class="p">/</span><span class="n" style="color: #333;">pdf</span><span class="p">/</span><span class="n" style="color: #333;">UQStart</span><span class="p">%</span><span class="m" style="color: #099;">20U</span><span class="n" style="color: #333;">p</span><span class="p">%</span><span class="m" style="color: #099;">20</span><span class="n" style="color: #333;">Guide</span><span class="p">.</span><span class="n" style="color: #333;">pdf</span></span>
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<pre style="margin: 0;">-<span id="LC289" class="line" lang="mosel"><span class="m" style="color: #099;">7.</span> <span class="n" style="color: #333;">Micro</span><span class="p">-</span><span class="n" style="color: #333;">Manager</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Formats</span><span class="p">.</span></span>
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290
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<pre style="margin: 0;">-<span id="LC290" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">micro</span><span class="p">-</span><span class="n" style="color: #333;">manager</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">wiki</span><span class="p">/</span><span class="n" style="color: #333;">Micro</span><span class="p">-</span><span class="n" style="color: #333;">Manager_File_Formats</span></span>
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291
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<pre style="margin: 0;">-<span id="LC291" class="line" lang="mosel"><span class="m" style="color: #099;">8.</span> <span class="n" style="color: #333;">Tags</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">TIFF</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">Related</span> <span class="n" style="color: #333;">Specifications</span><span class="p">.</span> <span class="n" style="color: #333;">Digital</span> <span class="n" style="color: #333;">Preservation</span><span class="p">.</span></span>
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292
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<pre style="margin: 0;">-<span id="LC292" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">loc</span><span class="p">.</span><span class="n" style="color: #333;">gov</span><span class="p">/</span><span class="n" style="color: #333;">preservation</span><span class="p">/</span><span class="n" style="color: #333;">digital</span><span class="p">/</span><span class="n" style="color: #333;">formats</span><span class="p">/</span><span class="n" style="color: #333;">content</span><span class="p">/</span><span class="n" style="color: #333;">tiff_tags</span><span class="p">.</span><span class="n" style="color: #333;">shtml</span></span>
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293
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<pre style="margin: 0;">-<span id="LC293" class="line" lang="mosel"><span class="m" style="color: #099;">9.</span> <span class="n" style="color: #333;">ScanImage</span> <span class="n" style="color: #333;">BigTiff</span> <span class="n" style="color: #333;">Specification</span> <span class="p">-</span> <span class="n" style="color: #333;">ScanImage</span> <span class="m" style="color: #099;">2016.</span></span>
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294
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<pre style="margin: 0;">-<span id="LC294" class="line" lang="mosel"> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">scanimage</span><span class="p">.</span><span class="n" style="color: #333;">vidriotechnologies</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">display</span><span class="p">/</span><span class="n" style="color: #333;">SI2016</span><span class="p">/</span></span>
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295
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<pre style="margin: 0;">-<span id="LC295" class="line" lang="mosel"> <span class="n" style="color: #333;">ScanImage</span><span class="p">+</span><span class="n" style="color: #333;">BigTiff</span><span class="p">+</span><span class="n" style="color: #333;">Specification</span></span>
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<td class="diff-line-num old old_line" data-linenumber="296" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
296
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<pre style="margin: 0;">-<span id="LC296" class="line" lang="mosel"><span class="m" style="color: #099;">10.</span> <span class="n" style="color: #333;">CIPA</span> <span class="n" style="color: #333;">DC</span><span class="p">-</span><span class="m" style="color: #099;">008</span><span class="p">-</span><span class="m" style="color: #099;">2016</span><span class="p">:</span> <span class="n" style="color: #333;">Exchangeable</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">format</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">digital</span> <span class="n" style="color: #333;">still</span> <span class="n" style="color: #333;">cameras</span><span class="p">:</span></span>
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297
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<pre style="margin: 0;">-<span id="LC297" class="line" lang="mosel"> <span class="n" style="color: #333;">Exif</span> <span class="k" style="font-weight: 600;">Version</span> <span class="m" style="color: #099;">2.31</span><span class="p">.</span></span>
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298
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<pre style="margin: 0;">-<span id="LC298" class="line" lang="mosel"> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">cipa</span><span class="p">.</span><span class="n" style="color: #333;">jp</span><span class="p">/</span><span class="n" style="color: #333;">std</span><span class="p">/</span><span class="n" style="color: #333;">documents</span><span class="p">/</span><span class="n" style="color: #333;">e</span><span class="p">/</span><span class="n" style="color: #333;">DC</span><span class="p">-</span><span class="m" style="color: #099;">008</span><span class="p">-</span><span class="n" style="color: #333;">Translation</span><span class="p">-</span><span class="m" style="color: #099;">2016</span><span class="p">-</span><span class="n" style="color: #333;">E</span><span class="p">.</span><span class="n" style="color: #333;">pdf</span></span>
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299
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<pre style="margin: 0;">-<span id="LC299" class="line" lang="mosel"><span class="m" style="color: #099;">11.</span> <span class="n" style="color: #333;">ZIF</span><span class="p">,</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">Zoomable</span> <span class="n" style="color: #333;">Image</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">format</span><span class="p">.</span> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">zif</span><span class="p">.</span><span class="n" style="color: #333;">photo</span><span class="p">/</span></span>
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<pre style="margin: 0;">-<span id="LC300" class="line" lang="mosel"><span class="m" style="color: #099;">12.</span> <span class="n" style="color: #333;">GeoTIFF</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">gdal</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">drivers</span><span class="p">/</span><span class="n" style="color: #333;">raster</span><span class="p">/</span><span class="n" style="color: #333;">gtiff</span><span class="p">.</span><span class="n" style="color: #333;">html</span></span>
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<pre style="margin: 0;">+<span id="LC303" class="line" lang="mosel"><span class="p">*</span> <span class="n" style="color: #333;">TIFF</span> <span class="m" style="color: #099;">6.0</span> <span class="n" style="color: #333;">Specification</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">Supplements</span><span class="p">.</span> <span class="n" style="color: #333;">Adobe</span> <span class="n" style="color: #333;">Systems</span> <span class="n" style="color: #333;">Incorporated</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC304" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">adobe</span><span class="p">.</span><span class="n" style="color: #333;">io</span><span class="p">/</span><span class="n" style="color: #333;">open</span><span class="p">/</span><span class="n" style="color: #333;">standards</span><span class="p">/</span><span class="n" style="color: #333;">TIFF</span><span class="p">.</span><span class="n" style="color: #333;">html</span></span>
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<pre style="margin: 0;">+<span id="LC305" class="line" lang="mosel"><span class="p">*</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span> <span class="n" style="color: #333;">FAQ</span><span class="p">.</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">awaresystems</span><span class="p">.</span><span class="n" style="color: #333;">be</span><span class="p">/</span><span class="n" style="color: #333;">imaging</span><span class="p">/</span><span class="n" style="color: #333;">tiff</span><span class="p">/</span><span class="n" style="color: #333;">faq</span><span class="p">.</span><span class="n" style="color: #333;">html</span></span>
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<pre style="margin: 0;">+<span id="LC306" class="line" lang="mosel"><span class="p">*</span> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">BigTIFF</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC307" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">awaresystems</span><span class="p">.</span><span class="n" style="color: #333;">be</span><span class="p">/</span><span class="n" style="color: #333;">imaging</span><span class="p">/</span><span class="n" style="color: #333;">tiff</span><span class="p">/</span><span class="n" style="color: #333;">bigtiff</span><span class="p">.</span><span class="n" style="color: #333;">html</span></span>
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308
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<pre style="margin: 0;">+<span id="LC308" class="line" lang="mosel"><span class="p">*</span> <span class="n" style="color: #333;">MetaMorph</span> <span class="n" style="color: #333;">Stack</span> <span class="p">(</span><span class="n" style="color: #333;">STK</span><span class="p">)</span> <span class="n" style="color: #333;">Image</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span><span class="p">.</span></span>
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309
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<pre style="margin: 0;">+<span id="LC309" class="line" lang="mosel"> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">mdc</span><span class="p">.</span><span class="n" style="color: #333;">custhelp</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">app</span><span class="p">/</span><span class="n" style="color: #333;">answers</span><span class="p">/</span><span class="n" style="color: #333;">detail</span><span class="p">/</span><span class="n" style="color: #333;">a_id</span><span class="p">/</span><span class="m" style="color: #099;">18862</span></span>
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310
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<pre style="margin: 0;">+<span id="LC310" class="line" lang="mosel"><span class="p">*</span> <span class="n" style="color: #333;">Image</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span> <span class="n" style="color: #333;">Description</span> <span class="n" style="color: #333;">LSM</span> <span class="m" style="color: #099;">5</span><span class="p">/</span><span class="m" style="color: #099;">7</span> <span class="n" style="color: #333;">Release</span> <span class="m" style="color: #099;">6.0</span> <span class="p">(</span><span class="n" style="color: #333;">ZEN</span> <span class="m" style="color: #099;">2010</span><span class="p">).</span></span>
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<pre style="margin: 0;">+<span id="LC311" class="line" lang="mosel"> <span class="n" style="color: #333;">Carl</span> <span class="n" style="color: #333;">Zeiss</span> <span class="n" style="color: #333;">MicroImaging</span> <span class="n" style="color: #333;">GmbH</span><span class="p">.</span> <span class="n" style="color: #333;">BioSciences</span><span class="p">.</span> <span class="n" style="color: #333;">May</span> <span class="m" style="color: #099;">10</span><span class="p">,</span> <span class="m" style="color: #099;">2011</span></span>
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312
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<pre style="margin: 0;">+<span id="LC312" class="line" lang="mosel"><span class="p">*</span> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">format</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC313" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">docs</span><span class="p">.</span><span class="n" style="color: #333;">openmicroscopy</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">ome</span><span class="p">-</span><span class="k" style="font-weight: 600;">model</span><span class="p">/</span><span class="n" style="color: #333;">latest</span><span class="p">/</span></span>
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<pre style="margin: 0;">+<span id="LC314" class="line" lang="mosel"><span class="p">*</span> <span class="n" style="color: #333;">UltraQuant</span><span class="p">(</span><span class="n" style="color: #333;">r</span><span class="p">)</span> <span class="k" style="font-weight: 600;">Version</span> <span class="m" style="color: #099;">6.0</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">Windows</span> <span class="n" style="color: #333;">Start</span><span class="p">-</span><span class="n" style="color: #333;">Up</span> <span class="n" style="color: #333;">Guide</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC315" class="line" lang="mosel"> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">ultralum</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">images</span><span class="p">%</span><span class="m" style="color: #099;">20ul</span><span class="n" style="color: #333;">tralum</span><span class="p">/</span><span class="n" style="color: #333;">pdf</span><span class="p">/</span><span class="n" style="color: #333;">UQStart</span><span class="p">%</span><span class="m" style="color: #099;">20U</span><span class="n" style="color: #333;">p</span><span class="p">%</span><span class="m" style="color: #099;">20</span><span class="n" style="color: #333;">Guide</span><span class="p">.</span><span class="n" style="color: #333;">pdf</span></span>
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316
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<pre style="margin: 0;">+<span id="LC316" class="line" lang="mosel"><span class="p">*</span> <span class="n" style="color: #333;">Micro</span><span class="p">-</span><span class="n" style="color: #333;">Manager</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Formats</span><span class="p">.</span></span>
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317
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<pre style="margin: 0;">+<span id="LC317" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">micro</span><span class="p">-</span><span class="n" style="color: #333;">manager</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">wiki</span><span class="p">/</span><span class="n" style="color: #333;">Micro</span><span class="p">-</span><span class="n" style="color: #333;">Manager_File_Formats</span></span>
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<td class="diff-line-num new new_line" data-linenumber="318" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
318
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<pre style="margin: 0;">+<span id="LC318" class="line" lang="mosel"><span class="p">*</span> <span class="n" style="color: #333;">ScanImage</span> <span class="n" style="color: #333;">BigTiff</span> <span class="n" style="color: #333;">Specification</span> <span class="p">-</span> <span class="n" style="color: #333;">ScanImage</span> <span class="m" style="color: #099;">2016.</span></span>
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<pre style="margin: 0;">+<span id="LC319" class="line" lang="mosel"> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">scanimage</span><span class="p">.</span><span class="n" style="color: #333;">vidriotechnologies</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">display</span><span class="p">/</span><span class="n" style="color: #333;">SI2016</span><span class="p">/</span></span>
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<pre style="margin: 0;">+<span id="LC320" class="line" lang="mosel"> <span class="n" style="color: #333;">ScanImage</span><span class="p">+</span><span class="n" style="color: #333;">BigTiff</span><span class="p">+</span><span class="n" style="color: #333;">Specification</span></span>
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<pre style="margin: 0;">+<span id="LC321" class="line" lang="mosel"><span class="p">*</span> <span class="n" style="color: #333;">ZIF</span><span class="p">,</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">Zoomable</span> <span class="n" style="color: #333;">Image</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">format</span><span class="p">.</span> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">zif</span><span class="p">.</span><span class="n" style="color: #333;">photo</span><span class="p">/</span></span>
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322
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<pre style="margin: 0;">+<span id="LC322" class="line" lang="mosel"><span class="p">*</span> <span class="n" style="color: #333;">GeoTIFF</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">gdal</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">drivers</span><span class="p">/</span><span class="n" style="color: #333;">raster</span><span class="p">/</span><span class="n" style="color: #333;">gtiff</span><span class="p">.</span><span class="n" style="color: #333;">html</span></span>
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<td class="diff-line-num new new_line" data-linenumber="323" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
323
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<pre style="margin: 0;">+<span id="LC323" class="line" lang="mosel"><span class="p">*</span> <span class="n" style="color: #333;">Cloud</span> <span class="n" style="color: #333;">optimized</span> <span class="n" style="color: #333;">GeoTIFF</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC324" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">github</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">cogeotiff</span><span class="p">/</span><span class="n" style="color: #333;">cog</span><span class="p">-</span><span class="n" style="color: #333;">spec</span><span class="p">/</span><span class="n" style="color: #333;">blob</span><span class="p">/</span><span class="n" style="color: #333;">master</span><span class="p">/</span><span class="n" style="color: #333;">spec</span><span class="p">.</span><span class="n" style="color: #333;">md</span></span>
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325
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<pre style="margin: 0;">+<span id="LC325" class="line" lang="mosel"><span class="p">*</span> <span class="n" style="color: #333;">Tags</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">TIFF</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">Related</span> <span class="n" style="color: #333;">Specifications</span><span class="p">.</span> <span class="n" style="color: #333;">Digital</span> <span class="n" style="color: #333;">Preservation</span><span class="p">.</span></span>
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326
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<pre style="margin: 0;">+<span id="LC326" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">loc</span><span class="p">.</span><span class="n" style="color: #333;">gov</span><span class="p">/</span><span class="n" style="color: #333;">preservation</span><span class="p">/</span><span class="n" style="color: #333;">digital</span><span class="p">/</span><span class="n" style="color: #333;">formats</span><span class="p">/</span><span class="n" style="color: #333;">content</span><span class="p">/</span><span class="n" style="color: #333;">tiff_tags</span><span class="p">.</span><span class="n" style="color: #333;">shtml</span></span>
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<pre style="margin: 0;">+<span id="LC327" class="line" lang="mosel"><span class="p">*</span> <span class="n" style="color: #333;">CIPA</span> <span class="n" style="color: #333;">DC</span><span class="p">-</span><span class="m" style="color: #099;">008</span><span class="p">-</span><span class="m" style="color: #099;">2016</span><span class="p">:</span> <span class="n" style="color: #333;">Exchangeable</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">format</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">digital</span> <span class="n" style="color: #333;">still</span> <span class="n" style="color: #333;">cameras</span><span class="p">:</span></span>
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328
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<pre style="margin: 0;">+<span id="LC328" class="line" lang="mosel"> <span class="n" style="color: #333;">Exif</span> <span class="k" style="font-weight: 600;">Version</span> <span class="m" style="color: #099;">2.31</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC329" class="line" lang="mosel"> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">cipa</span><span class="p">.</span><span class="n" style="color: #333;">jp</span><span class="p">/</span><span class="n" style="color: #333;">std</span><span class="p">/</span><span class="n" style="color: #333;">documents</span><span class="p">/</span><span class="n" style="color: #333;">e</span><span class="p">/</span><span class="n" style="color: #333;">DC</span><span class="p">-</span><span class="m" style="color: #099;">008</span><span class="p">-</span><span class="n" style="color: #333;">Translation</span><span class="p">-</span><span class="m" style="color: #099;">2016</span><span class="p">-</span><span class="n" style="color: #333;">E</span><span class="p">.</span><span class="n" style="color: #333;">pdf</span></span>
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301
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<pre style="margin: 0;"> <span id="LC330" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC331" class="line" lang="mosel"><span class="n" style="color: #333;">Examples</span></span>
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<pre style="margin: 0;"> <span id="LC332" class="line" lang="mosel"><span class="p">--------</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="430" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="459" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -430,19 +459,21 @@ Iterate over pages and tags in the TIFF file and successively read images:</td>
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459
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<pre style="margin: 0;"> <span id="LC459" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">tag_name</span><span class="p">,</span> <span class="n" style="color: #333;">tag_value</span> <span class="p">=</span> <span class="n" style="color: #333;">tag</span><span class="p">.</span><span class="n" style="color: #333;">name</span><span class="p">,</span> <span class="n" style="color: #333;">tag</span><span class="p">.</span><span class="n" style="color: #333;">value</span></span>
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431
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460
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<pre style="margin: 0;"> <span id="LC460" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">image</span> <span class="p">=</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">()</span></span>
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461
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<pre style="margin: 0;"> <span id="LC461" class="line" lang="mosel"></span>
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<pre style="margin: 0;">-<span id="LC433" class="line" lang="mosel"><span class="n" style="color: #333;"><span class="idiff left">Save</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">two</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">image</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">series</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">to</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">a</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC462" class="line" lang="mosel"><span class="n" style="color: #333;"><span class="idiff left">Write</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">two</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">numpy</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">arrays</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">to</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">a</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">multi</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">series</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">OME</span></span><span class="p"><span class="idiff right">-</span></span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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434
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463
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<pre style="margin: 0;"> <span id="LC463" class="line" lang="mosel"></span>
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435
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<pre style="margin: 0;">-<span id="LC435" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">data0</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">randint</span><span class="p">(</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="m" style="color: #099;">255</span><span class="p">,</span> <span class="p">(</span><span class="m" style="color: #099;">3<span class="idiff left">01</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff right">219</span></span><span class="p">,</span> <span class="m" style="color: #099;">3</span><span class="p">),</span> <span class="s1" style="color: #d14;">'uint8'</span><span class="p">)</span></span>
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436
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<td class="diff-line-num new_line old" data-linenumber="464" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC436" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">data1</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">randint</span><span class="p">(</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="m" style="color: #099;"><span class="idiff left">255</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="p"><span class="idiff">(</span></span><span class="m" style="color: #099;"><span class="idiff">5</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">301</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff right">219</span></span><span class="p">),</span> <span class="s1" style="color: #d14;">'uint16'</span><span class="p">)</span></span>
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437
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<td class="diff-line-num new_line old" data-linenumber="464" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC437" class="line" lang="mosel"><span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.<span class="idiff left right">tif'</span></span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="464" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
464
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<pre style="margin: 0;">+<span id="LC464" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">data0</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">randint</span><span class="p">(</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="m" style="color: #099;">255</span><span class="p">,</span> <span class="p">(</span><span class="m" style="color: #099;">3<span class="idiff left">2</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff right">32</span></span><span class="p">,</span> <span class="m" style="color: #099;">3</span><span class="p">),</span> <span class="s1" style="color: #d14;">'uint8'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
465
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<pre style="margin: 0;">+<span id="LC465" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">data1</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">randint</span><span class="p">(</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="m" style="color: #099;"><span class="idiff left">1023</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="p"><span class="idiff">(</span></span><span class="m" style="color: #099;"><span class="idiff">5</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">256</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff right">256</span></span><span class="p">),</span> <span class="s1" style="color: #d14;">'uint16'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="466" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
466
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<pre style="margin: 0;">+<span id="LC466" class="line" lang="mosel"><span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.<span class="idiff left">ome.tif'</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">ome</span></span><span class="p"><span class="idiff">=</span></span><span class="nb" style="color: #0086b3;"><span class="idiff right">True</span></span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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438
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<td class="diff-line-num new_line" data-linenumber="467" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
467
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<pre style="margin: 0;"> <span id="LC467" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data0</span><span class="p">,</span> <span class="n" style="color: #333;">compress</span><span class="p">=</span><span class="m" style="color: #099;">6</span><span class="p">,</span> <span class="n" style="color: #333;">photometric</span><span class="p">=</span><span class="s1" style="color: #d14;">'rgb'</span><span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="439" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
439
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<td class="diff-line-num new_line old" data-linenumber="468" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC439" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data1</span><span class="p">,</span> <span class="n" style="color: #333;">compress</span><span class="p">=</span><span class="m" style="color: #099;">6</span><span class="p">,</span> <span class="n" style="color: #333;">photometric</span><span class="p">=</span><span class="s1" style="color: #d14;">'minisblack'</span><span class="p">,</span> <span class="n" style="color: #333;">contiguous</span><span class="p">=</span><span class="nb" style="color: #0086b3;">False</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="468" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
468
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<pre style="margin: 0;">+<span id="LC468" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data1</span><span class="p">,</span> <span class="n" style="color: #333;">photometric</span><span class="p">=</span><span class="s1" style="color: #d14;">'minisblack'</span><span class="p">,</span> <span class="n" style="color: #333;">contiguous</span><span class="p">=</span><span class="nb" style="color: #0086b3;">False</span><span class="p">,</span></span>
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469
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<pre style="margin: 0;">+<span id="LC469" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">metadata</span><span class="p">=</span><span class="n" style="color: #333;">dict</span><span class="p">(</span><span class="n" style="color: #333;">axes</span><span class="p">=</span><span class="s1" style="color: #d14;">'ZYX'</span><span class="p">,</span> <span class="n" style="color: #333;">SignificantBits</span><span class="p">=</span><span class="m" style="color: #099;">10</span><span class="p">,</span></span>
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470
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<pre style="margin: 0;">+<span id="LC470" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">PositionZ</span><span class="p">=[</span><span class="m" style="color: #099;">0.0</span><span class="p">,</span> <span class="m" style="color: #099;">1.0</span><span class="p">,</span> <span class="m" style="color: #099;">2.0</span><span class="p">,</span> <span class="m" style="color: #099;">3.0</span><span class="p">,</span> <span class="m" style="color: #099;">4.0</span><span class="p">]))</span></span>
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440
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471
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<pre style="margin: 0;"> <span id="LC471" class="line" lang="mosel"></span>
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441
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<pre style="margin: 0;">-<span id="LC441" class="line" lang="mosel"><span class="n" style="color: #333;">Read</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">second</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC472" class="line" lang="mosel"><span class="n" style="color: #333;">Read</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">second</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;"><span class="idiff left">OME</span></span><span class="p"><span class="idiff right">-</span></span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC473" class="line" lang="mosel"></span>
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<pre style="margin: 0;">-<span id="LC443" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">series1</span> <span class="p">=</span> <span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">series</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC474" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">series1</span> <span class="p">=</span> <span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.<span class="idiff left right">ome.</span>tif'</span><span class="p">,</span> <span class="n" style="color: #333;">series</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC475" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">series1</span><span class="p">.</span><span class="n" style="color: #333;">shape</span></span>
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<pre style="margin: 0;">-<span id="LC445" class="line" lang="mosel"><span class="p">(</span><span class="m" style="color: #099;">5</span><span class="p">,</span> <span class="m" style="color: #099;"><span class="idiff left">301</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff right">219</span></span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC476" class="line" lang="mosel"><span class="p">(</span><span class="m" style="color: #099;">5</span><span class="p">,</span> <span class="m" style="color: #099;"><span class="idiff left">256</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff right">256</span></span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC477" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC478" class="line" lang="mosel"><span class="n" style="color: #333;">Read</span> <span class="n" style="color: #333;">an</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">stack</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">name</span> <span class="n" style="color: #333;">pattern</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC479" class="line" lang="mosel"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -457,9 +488,42 @@ Read an image stack from a series of TIFF files with a file name pattern:</td>
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<pre style="margin: 0;"> <span id="LC488" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">shape</span></span>
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<pre style="margin: 0;"> <span id="LC489" class="line" lang="mosel"><span class="p">(</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC490" class="line" lang="mosel"></span>
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<pre style="margin: 0;">-<span id="LC460" class="line" lang="mosel"><span class="n" style="color: #333;">Create</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">a<span class="idiff left">n</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">it</span>erator</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">tiles</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC491" class="line" lang="mosel"><span class="n" style="color: #333;">Create</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">a</span><span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff right">gen</span>erator</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">tiles</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC492" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC493" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">def</span> <span class="n" style="color: #333;">tiles</span><span class="p">():</span></span>
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<pre style="margin: 0;"> <span id="LC494" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">data</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="n" style="color: #333;">arange</span><span class="p">(</span><span class="m" style="color: #099;">3</span><span class="p">*</span><span class="m" style="color: #099;">4</span><span class="p">*</span><span class="m" style="color: #099;">16</span><span class="p">*</span><span class="m" style="color: #099;">16</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="p">=</span><span class="s1" style="color: #d14;">'uint16'</span><span class="p">).</span><span class="n" style="color: #333;">reshape</span><span class="p">((</span><span class="m" style="color: #099;">3</span><span class="p">*</span><span class="m" style="color: #099;">4</span><span class="p">,</span> <span class="m" style="color: #099;">16</span><span class="p">,</span> <span class="m" style="color: #099;">16</span><span class="p">))</span></span>
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<pre style="margin: 0;"> <span id="LC495" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">i</span> <span class="k" style="font-weight: 600;">in</span> <span class="k" style="font-weight: 600;">range</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">shape</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">]):</span> <span class="n" style="color: #333;">yield</span> <span class="n" style="color: #333;">data</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span></span>
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465
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496
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<pre style="margin: 0;"> <span id="LC496" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">tiles</span><span class="p">(),</span> <span class="n" style="color: #333;">dtype</span><span class="p">=</span><span class="s1" style="color: #d14;">'uint16'</span><span class="p">,</span> <span class="n" style="color: #333;">shape</span><span class="p">=(</span><span class="m" style="color: #099;">48</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">),</span> <span class="n" style="color: #333;">tile</span><span class="p">=(</span><span class="m" style="color: #099;">16</span><span class="p">,</span> <span class="m" style="color: #099;">16</span><span class="p">))</span></span>
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497
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<pre style="margin: 0;">+<span id="LC497" class="line" lang="mosel"></span>
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<td class="diff-line-num new new_line" data-linenumber="498" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
498
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<pre style="margin: 0;">+<span id="LC498" class="line" lang="mosel"><span class="n" style="color: #333;">Write</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">tiled</span><span class="p">,</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">resolution</span><span class="p">,</span> <span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compression</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="499" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
499
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<pre style="margin: 0;">+<span id="LC499" class="line" lang="mosel"></span>
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500
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<pre style="margin: 0;">+<span id="LC500" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">data</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="n" style="color: #333;">arange</span><span class="p">(</span><span class="m" style="color: #099;">1024</span><span class="p">*</span><span class="m" style="color: #099;">1024</span><span class="p">*</span><span class="m" style="color: #099;">3</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="p">=</span><span class="s1" style="color: #d14;">'uint8'</span><span class="p">).</span><span class="n" style="color: #333;">reshape</span><span class="p">((</span><span class="m" style="color: #099;">1024</span><span class="p">,</span> <span class="m" style="color: #099;">1024</span><span class="p">,</span> <span class="m" style="color: #099;">3</span><span class="p">))</span></span>
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<td class="diff-line-num new new_line" data-linenumber="501" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
501
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<pre style="margin: 0;">+<span id="LC501" class="line" lang="mosel"><span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="502" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
502
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<pre style="margin: 0;">+<span id="LC502" class="line" lang="mosel"><span class="p">...</span> <span class="k" style="font-weight: 600;">options</span> <span class="p">=</span> <span class="n" style="color: #333;">dict</span><span class="p">(</span><span class="n" style="color: #333;">tile</span><span class="p">=(</span><span class="m" style="color: #099;">256</span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">),</span> <span class="n" style="color: #333;">compress</span><span class="p">=</span><span class="s1" style="color: #d14;">'jpeg'</span><span class="p">,</span> <span class="n" style="color: #333;">metadata</span><span class="p">=</span><span class="n" style="color: #333;">None</span><span class="p">)</span></span>
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503
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<pre style="margin: 0;">+<span id="LC503" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="p">**</span><span class="k" style="font-weight: 600;">options</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="504" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
504
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<pre style="margin: 0;">+<span id="LC504" class="line" lang="mosel"><span class="p">...</span> <span class="p">#</span> <span class="n" style="color: #333;">save</span> <span class="n" style="color: #333;">pyramid</span> <span class="n" style="color: #333;">levels</span><span class="p">.</span> <span class="k" style="font-weight: 600;">In</span> <span class="n" style="color: #333;">production</span> <span class="n" style="color: #333;">use</span> <span class="n" style="color: #333;">resampling</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">generate</span> <span class="n" style="color: #333;">levels</span><span class="c1" style="color: #998; font-style: italic;">!</span></span>
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505
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<pre style="margin: 0;">+<span id="LC505" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">[::</span><span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="p">::</span><span class="m" style="color: #099;">2</span><span class="p">],</span> <span class="n" style="color: #333;">subfiletype</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="p">**</span><span class="k" style="font-weight: 600;">options</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="506" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
506
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<pre style="margin: 0;">+<span id="LC506" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">[::</span><span class="m" style="color: #099;">4</span><span class="p">,</span> <span class="p">::</span><span class="m" style="color: #099;">4</span><span class="p">],</span> <span class="n" style="color: #333;">subfiletype</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="p">**</span><span class="k" style="font-weight: 600;">options</span><span class="p">)</span></span>
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507
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<pre style="margin: 0;">+<span id="LC507" class="line" lang="mosel"></span>
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<td class="diff-line-num new new_line" data-linenumber="508" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
508
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<pre style="margin: 0;">+<span id="LC508" class="line" lang="mosel"><span class="n" style="color: #333;">Access</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">levels</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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509
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<pre style="margin: 0;">+<span id="LC509" class="line" lang="mosel"></span>
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510
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<pre style="margin: 0;">+<span id="LC510" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">baseimage</span> <span class="p">=</span> <span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="511" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
511
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<pre style="margin: 0;">+<span id="LC511" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">second_level</span> <span class="p">=</span> <span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">series</span><span class="p">=</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">level</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="512" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
512
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<pre style="margin: 0;">+<span id="LC512" class="line" lang="mosel"><span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC513" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">baseimage</span> <span class="p">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">].</span><span class="n" style="color: #333;">asarray</span><span class="p">()</span></span>
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514
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<pre style="margin: 0;">+<span id="LC514" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">second_level</span> <span class="p">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">].</span><span class="n" style="color: #333;">levels</span><span class="p">[</span><span class="m" style="color: #099;">1</span><span class="p">].</span><span class="n" style="color: #333;">asarray</span><span class="p">()</span></span>
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515
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<pre style="margin: 0;">+<span id="LC515" class="line" lang="mosel"></span>
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516
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<pre style="margin: 0;">+<span id="LC516" class="line" lang="mosel"><span class="n" style="color: #333;">Iterate</span> <span class="n" style="color: #333;">over</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">decode</span> <span class="n" style="color: #333;">single</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">tiles</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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517
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<pre style="margin: 0;">+<span id="LC517" class="line" lang="mosel"></span>
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518
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<pre style="margin: 0;">+<span id="LC518" class="line" lang="mosel"><span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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519
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<pre style="margin: 0;">+<span id="LC519" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">fh</span> <span class="p">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">filehandle</span></span>
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520
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<pre style="margin: 0;">+<span id="LC520" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">page</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">:</span></span>
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521
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<pre style="margin: 0;">+<span id="LC521" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">jpegtables</span> <span class="p">=</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">tags</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s1" style="color: #d14;">'JPEGTables'</span><span class="p">,</span> <span class="n" style="color: #333;">None</span><span class="p">)</span></span>
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522
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<pre style="margin: 0;">+<span id="LC522" class="line" lang="mosel"><span class="p">...</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">jpegtables</span> <span class="n" style="color: #333;">is</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">None</span><span class="p">:</span></span>
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523
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<pre style="margin: 0;">+<span id="LC523" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">jpegtables</span> <span class="p">=</span> <span class="n" style="color: #333;">jpegtables</span><span class="p">.</span><span class="n" style="color: #333;">value</span></span>
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524
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<pre style="margin: 0;">+<span id="LC524" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">index</span><span class="p">,</span> <span class="p">(</span><span class="n" style="color: #333;">offset</span><span class="p">,</span> <span class="n" style="color: #333;">bytecount</span><span class="p">)</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">enumerate</span><span class="p">(</span></span>
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525
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<pre style="margin: 0;">+<span id="LC525" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">zip</span><span class="p">(</span><span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">dataoffsets</span><span class="p">,</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">databytecounts</span><span class="p">)</span></span>
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526
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<pre style="margin: 0;">+<span id="LC526" class="line" lang="mosel"><span class="p">...</span> <span class="p">):</span></span>
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527
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<pre style="margin: 0;">+<span id="LC527" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="n" style="color: #333;">seek</span><span class="p">(</span><span class="n" style="color: #333;">offset</span><span class="p">)</span></span>
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528
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<pre style="margin: 0;">+<span id="LC528" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">data</span> <span class="p">=</span> <span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="nb" style="color: #0086b3;">read</span><span class="p">(</span><span class="n" style="color: #333;">bytecount</span><span class="p">)</span></span>
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529
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<pre style="margin: 0;">+<span id="LC529" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">tile</span><span class="p">,</span> <span class="n" style="color: #333;">indices</span><span class="p">,</span> <span class="n" style="color: #333;">shape</span> <span class="p">=</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">decode</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">index</span><span class="p">,</span> <span class="n" style="color: #333;">jpegtables</span><span class="p">)</span></span></pre>
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<a href="https://salsa.debian.org/python-team/modules/tifffile/-/commit/2a5bc8b5fe528ce2d93f5d400258cbe8f2088e3a#8e2edce0d507e1297474f25c00cae94258db38d8"><strong>setup.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -71,11 +71,11 @@ setup(</td>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># 'imagecodecs>=2020.2.18',</span></span>
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72
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72
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="python"> <span class="p">],</span></span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="python"> <span class="n" style="color: #333;">extras_require</span><span class="o" style="font-weight: 600;">=</span><span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC74" class="line" lang="python"> <span class="s" style="color: #d14;">'all'</span><span class="p">:</span> <span class="p">[</span><span class="s" style="color: #d14;">'imagecodecs>=2020.2.18'</span><span class="p">,</span> <span class="s" style="color: #d14;">'matplotlib>=3.1'</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="python"> <span class="s" style="color: #d14;">'all'</span><span class="p">:</span> <span class="p">[</span><span class="s" style="color: #d14;">'imagecodecs>=2020.2.18'</span><span class="p">,</span> <span class="s" style="color: #d14;">'matplotlib>=3.1'</span><span class="p"><span class="idiff left">,</span></span><span class="idiff"> </span><span class="s" style="color: #d14;"><span class="idiff right">'lxml'</span></span><span class="p">],</span></span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="python"> <span class="p">},</span></span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="python"> <span class="n" style="color: #333;">tests_require</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span></span>
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77
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="python"> <span class="s" style="color: #d14;">'pytest'</span><span class="p">,</span> <span class="s" style="color: #d14;">'imagecodecs'</span><span class="p">,</span> <span class="s" style="color: #d14;">'czifile'</span><span class="p">,</span> <span class="s" style="color: #d14;">'cmapfile'</span><span class="p">,</span> <span class="s" style="color: #d14;">'oiffile'</span><span class="p">,</span> <span class="s" style="color: #d14;">'lfdfiles'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="python"> <span class="s" style="color: #d14;">'roifile'</span></span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="python"> <span class="s" style="color: #d14;">'roifile'</span><span class="p"><span class="idiff left">,</span></span><span class="idiff"> </span><span class="s" style="color: #d14;"><span class="idiff">'lxml'</span></span><span class="p"><span class="idiff right">,</span></span></span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="python"> <span class="p">],</span></span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="python"> <span class="n" style="color: #333;">entry_points</span><span class="o" style="font-weight: 600;">=</span><span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="python"> <span class="s" style="color: #d14;">'console_scripts'</span><span class="p">:</span> <span class="p">[</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -92,7 +92,6 @@ setup(</td>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="python"> <span class="s" style="color: #d14;">'Intended Audience :: Developers'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="python"> <span class="s" style="color: #d14;">'Operating System :: OS Independent'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="python"> <span class="s" style="color: #d14;">'Programming Language :: Python :: 3 :: Only'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC95" class="line" lang="python"> <span class="s" style="color: #d14;">'Programming Language :: Python :: 3.6'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="python"> <span class="s" style="color: #d14;">'Programming Language :: Python :: 3.7'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="python"> <span class="s" style="color: #d14;">'Programming Language :: Python :: 3.8'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="python"> <span class="s" style="color: #d14;">'Programming Language :: Python :: 3.9'</span><span class="p">,</span></span>
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<li id="0e68eb77c1fac130dbc2b1470ebea5146df3de0b">
<a href="https://salsa.debian.org/python-team/modules/tifffile/-/commit/2a5bc8b5fe528ce2d93f5d400258cbe8f2088e3a#0e68eb77c1fac130dbc2b1470ebea5146df3de0b"><strong>tests/test_tifffile.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -42,7 +42,7 @@ Private data files are not available due to size and copyright restrictions.</td>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="python"><span class="s" style="color: #d14;"></span></span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="python"><span class="s" style="color: #d14;">:License: BSD 3-Clause</span></span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="python"><span class="s" style="color: #d14;"></span></span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="python"><span class="s" style="color: #d14;">:Version: 2020.<span class="idiff left right">6.3</span></span></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="python"><span class="s" style="color: #d14;">:Version: 2020.<span class="idiff left right">7.17</span></span></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="python"><span class="s" style="color: #d14;"></span></span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="python"><span class="s" style="color: #d14;">"""</span></span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="python"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -66,6 +66,8 @@ from numpy.testing import (</td>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="python"> <span class="n" style="color: #333;">assert_allclose</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="python"><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">lxml</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">etree</span></span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">tifffile</span></span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="python"><span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -97,6 +99,7 @@ except NameError:</td>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="python"> <span class="n" style="color: #333;">STAR_IMPORTED</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span></span>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">tifffile.tifffile</span> <span class="kn" style="font-weight: 600;">import</span> <span class="p">(</span></span>
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="python"> <span class="n" style="color: #333;">imagecodecs</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="python"> <span class="n" style="color: #333;">TIFF</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="python"> <span class="n" style="color: #333;">imwrite</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="python"> <span class="n" style="color: #333;">imread</span><span class="p">,</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -112,6 +115,8 @@ from tifffile.tifffile import (</td>
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="python"> <span class="n" style="color: #333;">TiffPageSeries</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="python"> <span class="n" style="color: #333;">TiffTag</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="python"> <span class="n" style="color: #333;">TiffTags</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="python"> <span class="n" style="color: #333;">OmeXmlError</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="python"> <span class="n" style="color: #333;">OmeXml</span><span class="p">,</span></span>
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120
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="python"> <span class="n" style="color: #333;">lazyattr</span><span class="p">,</span></span>
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116
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121
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="python"> <span class="n" style="color: #333;">natural_sorted</span><span class="p">,</span></span>
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117
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122
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="python"> <span class="n" style="color: #333;">stripnull</span><span class="p">,</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="153" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="158" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -153,6 +158,8 @@ from tifffile.tifffile import (</td>
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153
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158
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="python"> <span class="n" style="color: #333;">hexdump</span><span class="p">,</span></span>
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154
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159
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<pre style="margin: 0;"> <span id="LC159" class="line" lang="python"> <span class="n" style="color: #333;">validate_jhove</span><span class="p">,</span></span>
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155
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160
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="python"> <span class="n" style="color: #333;">xml2dict</span><span class="p">,</span></span>
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161
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="python"> <span class="n" style="color: #333;">subresolution</span><span class="p">,</span></span>
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162
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="python"> <span class="n" style="color: #333;">asbool</span><span class="p">,</span></span>
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163
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<pre style="margin: 0;"> <span id="LC163" class="line" lang="python"><span class="p">)</span></span>
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157
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164
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="python"></span>
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158
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165
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># skip certain tests</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="161" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="168" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -161,7 +168,7 @@ SKIP_EXTENDED = False</td>
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161
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168
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="python"><span class="n" style="color: #333;">SKIP_ROUNDTRIPS</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">False</span></span>
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162
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="python"><span class="n" style="color: #333;">SKIP_PUBLIC</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">False</span> <span class="c1" style="color: #998; font-style: italic;"># skip public files</span></span>
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163
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="python"><span class="n" style="color: #333;">SKIP_PRIVATE</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">False</span> <span class="c1" style="color: #998; font-style: italic;"># skip private files</span></span>
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164
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<pre style="margin: 0;">-<span id="LC164" class="line" lang="python"><span class="n" style="color: #333;">SKIP_VALIDATE</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">True</span> <span class="c1" style="color: #998; font-style: italic;"># validate written files with jhove</span></span>
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171
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="python"><span class="n" style="color: #333;">SKIP_VALIDATE</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">True</span> <span class="c1" style="color: #998; font-style: italic;"># <span class="idiff left right">skip </span>validate written files with jhove</span></span>
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165
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172
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<pre style="margin: 0;"> <span id="LC172" class="line" lang="python"><span class="n" style="color: #333;">SKIP_CODECS</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">False</span></span>
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166
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173
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<pre style="margin: 0;"> <span id="LC173" class="line" lang="python"><span class="n" style="color: #333;">SKIP_32BIT</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sys</span><span class="p">.</span><span class="n" style="color: #333;">maxsize</span> <span class="o" style="font-weight: 600;"><</span> <span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">**</span><span class="mi" style="color: #099;">32</span></span>
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167
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174
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<pre style="margin: 0;"> <span id="LC174" class="line" lang="python"><span class="n" style="color: #333;">SKIP_BE</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sys</span><span class="p">.</span><span class="n" style="color: #333;">byteorder</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'big'</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -212,13 +219,7 @@ if not os.path.exists(PRIVATE_DIR):</td>
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="python"> <span class="n" style="color: #333;">SKIP_PRIVATE</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">True</span></span>
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="python"><span class="k" style="font-weight: 600;">if</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">SKIP_CODECS</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC215" class="line" lang="python"> <span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC216" class="line" lang="python"> <span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">imagecodecs</span> <span class="c1" style="color: #998; font-style: italic;"># noqa</span></span>
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<pre style="margin: 0;">-<span id="LC217" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span> <span class="nb" style="color: #0086b3;">ImportError</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC218" class="line" lang="python"> <span class="n" style="color: #333;">SKIP_CODECS</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">True</span></span>
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<pre style="margin: 0;">-<span id="LC219" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC220" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">imagecodecs</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC221" class="line" lang="python"> <span class="n" style="color: #333;">SKIP_CODECS</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">True</span></span>
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<pre style="margin: 0;">+<span id="LC222" class="line" lang="python"> <span class="n" style="color: #333;">SKIP_CODECS</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">imagecodecs</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span></span>
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">config</span><span class="p">():</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -274,6 +275,22 @@ def assert__str__(tif, detail=3):</td>
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<pre style="margin: 0;"> <span id="LC275" class="line" lang="python"> <span class="n" style="color: #333;">TiffFile</span><span class="p">.</span><span class="n" style="color: #333;">__str__</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">,</span> <span class="n" style="color: #333;">detail</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">i</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC276" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC277" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC278" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">assert_valid_omexml</span><span class="p">(</span><span class="n" style="color: #333;">omexml</span><span class="p">,</span> <span class="n" style="color: #333;">omexsd</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">_schema</span><span class="o" style="font-weight: 600;">=</span><span class="p">[]):</span></span>
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<pre style="margin: 0;">+<span id="LC279" class="line" lang="python"> <span class="s" style="color: #d14;">"""Validate OME-XML schema."""</span></span>
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<pre style="margin: 0;">+<span id="LC280" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">_schema</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC281" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">omexsd</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC282" class="line" lang="python"> <span class="n" style="color: #333;">omexsd</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">path</span><span class="p">.</span><span class="n" style="color: #333;">join</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">path</span><span class="p">.</span><span class="n" style="color: #333;">dirname</span><span class="p">(</span><span class="n" style="color: #333;">__file__</span><span class="p">),</span> <span class="s" style="color: #d14;">'ome.xsd'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="283" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
283
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<pre style="margin: 0;">+<span id="LC283" class="line" lang="python"> <span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="284" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
284
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<pre style="margin: 0;">+<span id="LC284" class="line" lang="python"> <span class="n" style="color: #333;">_schema</span><span class="p">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">etree</span><span class="p">.</span><span class="n" style="color: #333;">XMLSchema</span><span class="p">(</span><span class="n" style="color: #333;">etree</span><span class="p">.</span><span class="n" style="color: #333;">parse</span><span class="p">(</span><span class="n" style="color: #333;">omexsd</span><span class="p">)))</span></span>
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<td class="diff-line-num new new_line" data-linenumber="285" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
285
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<pre style="margin: 0;">+<span id="LC285" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span> <span class="nb" style="color: #0086b3;">Exception</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="286" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
286
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<pre style="margin: 0;">+<span id="LC286" class="line" lang="python"> <span class="n" style="color: #333;">_schema</span><span class="p">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="bp" style="color: #999;">None</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="287" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
287
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<pre style="margin: 0;">+<span id="LC287" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">_schema</span> <span class="ow" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">_schema</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="ow" style="font-weight: 600;">is</span> <span class="ow" style="font-weight: 600;">not</span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>
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288
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<pre style="margin: 0;">+<span id="LC288" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">omexml</span><span class="p">.</span><span class="n" style="color: #333;">startswith</span><span class="p">(</span><span class="s" style="color: #d14;">'<?xml'</span><span class="p">):</span></span>
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289
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<pre style="margin: 0;">+<span id="LC289" class="line" lang="python"> <span class="n" style="color: #333;">omexml</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">omexml</span><span class="p">.</span><span class="n" style="color: #333;">split</span><span class="p">(</span><span class="s" style="color: #d14;">'>'</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">)[</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">]</span></span>
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290
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<pre style="margin: 0;">+<span id="LC290" class="line" lang="python"> <span class="n" style="color: #333;">xml</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">etree</span><span class="p">.</span><span class="n" style="color: #333;">fromstring</span><span class="p">(</span><span class="n" style="color: #333;">omexml</span><span class="p">)</span></span>
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291
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<pre style="margin: 0;">+<span id="LC291" class="line" lang="python"> <span class="n" style="color: #333;">_schema</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">].</span><span class="n" style="color: #333;">assert_</span><span class="p">(</span><span class="n" style="color: #333;">xml</span><span class="p">)</span></span>
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292
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<pre style="margin: 0;">+<span id="LC292" class="line" lang="python"></span>
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293
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<pre style="margin: 0;">+<span id="LC293" class="line" lang="python"></span>
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277
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294
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<pre style="margin: 0;"> <span id="LC294" class="line" lang="python"><span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">SKIP_VALIDATE</span><span class="p">:</span></span>
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278
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295
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<pre style="margin: 0;"> <span id="LC295" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">assert_valid</span><span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">args</span><span class="p">,</span> <span class="o" style="font-weight: 600;">**</span><span class="n" style="color: #333;">kwargs</span><span class="p">):</span></span>
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279
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<td class="diff-line-num new_line" data-linenumber="296" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
296
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<pre style="margin: 0;"> <span id="LC296" class="line" lang="python"> <span class="s" style="color: #d14;">"""Do not validate TIFF file."""</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="384" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="401" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -384,6 +401,20 @@ def test_issue_infinite_loop():</td>
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384
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401
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<pre style="margin: 0;"> <span id="LC401" class="line" lang="python"> <span class="n" style="color: #333;">assert__str__</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">)</span></span>
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385
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402
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<pre style="margin: 0;"> <span id="LC402" class="line" lang="python"></span>
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386
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403
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<pre style="margin: 0;"> <span id="LC403" class="line" lang="python"></span>
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<td class="diff-line-num new new_line" data-linenumber="404" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
404
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<pre style="margin: 0;">+<span id="LC404" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">mark</span><span class="p">.</span><span class="n" style="color: #333;">skipif</span><span class="p">(</span><span class="n" style="color: #333;">SKIP_PRIVATE</span> <span class="ow" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">SKIP_CODECS</span><span class="p">,</span> <span class="n" style="color: #333;">reason</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">REASON</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="405" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
405
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<pre style="margin: 0;">+<span id="LC405" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_issue_jpeg_ia</span><span class="p">():</span></span>
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406
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<pre style="margin: 0;">+<span id="LC406" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test JPEG compressed intensity image with alpha channel."""</span></span>
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<pre style="margin: 0;">+<span id="LC407" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># no extrasamples!</span></span>
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408
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<pre style="margin: 0;">+<span id="LC408" class="line" lang="python"> <span class="n" style="color: #333;">fname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">private_file</span><span class="p">(</span><span class="s" style="color: #d14;">'issues/jpeg_ia.tiff'</span><span class="p">)</span></span>
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409
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<pre style="margin: 0;">+<span id="LC409" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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410
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<pre style="margin: 0;">+<span id="LC410" class="line" lang="python"> <span class="n" style="color: #333;">page</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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411
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<pre style="margin: 0;">+<span id="LC411" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">compression</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">JPEG</span></span>
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412
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<pre style="margin: 0;">+<span id="LC412" class="line" lang="python"> <span class="n" style="color: #333;">assert_array_equal</span><span class="p">(</span></span>
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413
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<pre style="margin: 0;">+<span id="LC413" class="line" lang="python"> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">(),</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="n" style="color: #333;">array</span><span class="p">([[[</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">],</span> <span class="p">[</span><span class="mi" style="color: #099;">255</span><span class="p">,</span> <span class="mi" style="color: #099;">255</span><span class="p">]]],</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'uint8'</span><span class="p">)</span></span>
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414
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<pre style="margin: 0;">+<span id="LC414" class="line" lang="python"> <span class="p">)</span></span>
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415
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<pre style="margin: 0;">+<span id="LC415" class="line" lang="python"> <span class="n" style="color: #333;">assert__str__</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">)</span></span>
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416
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<pre style="margin: 0;">+<span id="LC416" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC417" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC418" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_issue_specific_pages</span><span class="p">():</span></span>
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388
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419
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<pre style="margin: 0;"> <span id="LC419" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test read second page."""</span></span>
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389
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<pre style="margin: 0;"> <span id="LC420" class="line" lang="python"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">random_data</span><span class="p">(</span><span class="s" style="color: #d14;">'uint8'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">21</span><span class="p">,</span> <span class="mi" style="color: #099;">31</span><span class="p">))</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="634" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="665" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -634,14 +665,16 @@ def test_issue_valueoffset():</td>
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665
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<pre style="margin: 0;"> <span id="LC665" class="line" lang="python"> <span class="n" style="color: #333;">page</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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635
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666
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<pre style="margin: 0;"> <span id="LC666" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># inline value</span></span>
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636
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667
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<pre style="margin: 0;"> <span id="LC667" class="line" lang="python"> <span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="n" style="color: #333;">seek</span><span class="p">(</span><span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">tags</span><span class="p">[</span><span class="s" style="color: #d14;">'ImageLength'</span><span class="p">].</span><span class="n" style="color: #333;">valueoffset</span><span class="p">)</span></span>
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637
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<pre style="margin: 0;">-<span id="LC637" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">imagelength</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">unpack</span><span class="p">(</span><span class="s" style="color: #d14;">'H'</span><span class="p">,</span> <span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="n" style="color: #333;">read</span><span class="p">(</span><span class="mi" style="color: #099;">2</span><span class="p">))[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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668
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<pre style="margin: 0;">+<span id="LC668" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">imagelength</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">unpack</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">byteorder</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">'H'</span><span class="p">,</span></span>
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669
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<pre style="margin: 0;">+<span id="LC669" class="line" lang="python"> <span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="n" style="color: #333;">read</span><span class="p">(</span><span class="mi" style="color: #099;">2</span><span class="p">))[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC670" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># separate value</span></span>
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671
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<pre style="margin: 0;"> <span id="LC671" class="line" lang="python"> <span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="n" style="color: #333;">seek</span><span class="p">(</span><span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">tags</span><span class="p">[</span><span class="s" style="color: #d14;">'Software'</span><span class="p">].</span><span class="n" style="color: #333;">valueoffset</span><span class="p">)</span></span>
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672
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<pre style="margin: 0;"> <span id="LC672" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">software</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">bytes2str</span><span class="p">(</span><span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="n" style="color: #333;">read</span><span class="p">(</span><span class="mi" style="color: #099;">13</span><span class="p">))</span></span>
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<pre style="margin: 0;"> <span id="LC673" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># TiffFrame</span></span>
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674
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<pre style="margin: 0;"> <span id="LC674" class="line" lang="python"> <span class="n" style="color: #333;">page</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">].</span><span class="n" style="color: #333;">aspage</span><span class="p">()</span></span>
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675
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<pre style="margin: 0;"> <span id="LC675" class="line" lang="python"> <span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="n" style="color: #333;">seek</span><span class="p">(</span><span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">tags</span><span class="p">[</span><span class="s" style="color: #d14;">'StripOffsets'</span><span class="p">].</span><span class="n" style="color: #333;">valueoffset</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC644" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">dataoffsets</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">unpack</span><span class="p">(</span><span class="s" style="color: #d14;">'I'</span><span class="p">,</span> <span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="n" style="color: #333;">read</span><span class="p">(</span><span class="mi" style="color: #099;">4</span><span class="p">))[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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676
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<pre style="margin: 0;">+<span id="LC676" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">dataoffsets</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">unpack</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">byteorder</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">'I'</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC677" class="line" lang="python"> <span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="n" style="color: #333;">read</span><span class="p">(</span><span class="mi" style="color: #099;">4</span><span class="p">))[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC678" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC679" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC680" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">mark</span><span class="p">.</span><span class="n" style="color: #333;">skipif</span><span class="p">(</span><span class="n" style="color: #333;">SKIP_PUBLIC</span><span class="p">,</span> <span class="n" style="color: #333;">reason</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">REASON</span><span class="p">)</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="816" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="849" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -816,7 +849,7 @@ def test_class_tifftags():</td>
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849
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<pre style="margin: 0;"> <span id="LC849" class="line" lang="python"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">random_data</span><span class="p">(</span><span class="s" style="color: #d14;">'uint8'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">21</span><span class="p">,</span> <span class="mi" style="color: #099;">31</span><span class="p">))</span></span>
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817
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850
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<pre style="margin: 0;"> <span id="LC850" class="line" lang="python"></span>
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851
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<pre style="margin: 0;"> <span id="LC851" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TempFileName</span><span class="p">(</span><span class="s" style="color: #d14;">'class_tifftags'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">fname</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC819" class="line" lang="python"> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">,</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">description</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'test'</span><span class="p">,</span> <span class="n" style="color: #333;">software</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;"><span class="idiff left right">Non</span>e</span><span class="p">)</span></span>
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852
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<pre style="margin: 0;">+<span id="LC852" class="line" lang="python"> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">,</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">description</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'test'</span><span class="p">,</span> <span class="n" style="color: #333;">software</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;"><span class="idiff left right">Fals</span>e</span><span class="p">)</span></span>
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853
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<pre style="margin: 0;"> <span id="LC853" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC854" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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822
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855
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<pre style="margin: 0;"> <span id="LC855" class="line" lang="python"> <span class="n" style="color: #333;">tags</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">].</span><span class="n" style="color: #333;">tags</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="938" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -938,6 +971,200 @@ def test_class_tifftagregistry():</td>
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938
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971
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<pre style="margin: 0;"> <span id="LC971" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="s" style="color: #d14;">"41483, 'FlashEnergy'"</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">info</span></span>
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939
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972
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<pre style="margin: 0;"> <span id="LC972" class="line" lang="python"></span>
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940
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973
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<pre style="margin: 0;"> <span id="LC973" class="line" lang="python"></span>
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974
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<pre style="margin: 0;">+<span id="LC974" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">mark</span><span class="p">.</span><span class="n" style="color: #333;">parametrize</span><span class="p">(</span></span>
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975
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<pre style="margin: 0;">+<span id="LC975" class="line" lang="python"> <span class="s" style="color: #d14;">'shape, storedshape, dtype, axes, error'</span><span class="p">,</span></span>
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976
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<pre style="margin: 0;">+<span id="LC976" class="line" lang="python"> <span class="p">[</span></span>
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977
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<pre style="margin: 0;">+<span id="LC977" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># separate and contig</span></span>
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978
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<pre style="margin: 0;">+<span id="LC978" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">),</span> <span class="s" style="color: #d14;">'uint8'</span><span class="p">,</span> <span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">ValueError</span><span class="p">),</span></span>
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979
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<pre style="margin: 0;">+<span id="LC979" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># depth</span></span>
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980
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<pre style="margin: 0;">+<span id="LC980" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="s" style="color: #d14;">'uint8'</span><span class="p">,</span> <span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">OmeXmlError</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="981" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
981
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<pre style="margin: 0;">+<span id="LC981" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># dtype</span></span>
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982
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<pre style="margin: 0;">+<span id="LC982" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="s" style="color: #d14;">'float16'</span><span class="p">,</span> <span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">OmeXmlError</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="983" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
983
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<pre style="margin: 0;">+<span id="LC983" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># empty</span></span>
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<td class="diff-line-num new new_line" data-linenumber="984" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
984
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<pre style="margin: 0;">+<span id="LC984" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="s" style="color: #d14;">'uint8'</span><span class="p">,</span> <span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">OmeXmlError</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="985" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
985
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<pre style="margin: 0;">+<span id="LC985" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># not YX</span></span>
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986
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<pre style="margin: 0;">+<span id="LC986" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="s" style="color: #d14;">'uint8'</span><span class="p">,</span> <span class="s" style="color: #d14;">'XZ'</span><span class="p">,</span> <span class="n" style="color: #333;">OmeXmlError</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="987" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
987
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<pre style="margin: 0;">+<span id="LC987" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># unknown axis</span></span>
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<pre style="margin: 0;">+<span id="LC988" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="s" style="color: #d14;">'uint8'</span><span class="p">,</span> <span class="s" style="color: #d14;">'KYX'</span><span class="p">,</span> <span class="n" style="color: #333;">OmeXmlError</span><span class="p">),</span></span>
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989
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<pre style="margin: 0;">+<span id="LC989" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># double axis</span></span>
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990
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<pre style="margin: 0;">+<span id="LC990" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="s" style="color: #d14;">'uint8'</span><span class="p">,</span> <span class="s" style="color: #d14;">'YYX'</span><span class="p">,</span> <span class="n" style="color: #333;">OmeXmlError</span><span class="p">),</span></span>
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991
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<pre style="margin: 0;">+<span id="LC991" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># more than 5 dimensions</span></span>
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992
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<pre style="margin: 0;">+<span id="LC992" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="s" style="color: #d14;">'uint8'</span><span class="p">,</span> <span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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993
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<pre style="margin: 0;">+<span id="LC993" class="line" lang="python"> <span class="n" style="color: #333;">OmeXmlError</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="994" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
994
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<pre style="margin: 0;">+<span id="LC994" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># more than 6 dimensions</span></span>
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995
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<pre style="margin: 0;">+<span id="LC995" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">),</span> <span class="s" style="color: #d14;">'uint8'</span><span class="p">,</span> <span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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996
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<pre style="margin: 0;">+<span id="LC996" class="line" lang="python"> <span class="n" style="color: #333;">OmeXmlError</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="997" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
997
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<pre style="margin: 0;">+<span id="LC997" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># more than 8 dimensions</span></span>
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998
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<pre style="margin: 0;">+<span id="LC998" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="s" style="color: #d14;">'uint8'</span><span class="p">,</span></span>
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999
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<pre style="margin: 0;">+<span id="LC999" class="line" lang="python"> <span class="s" style="color: #d14;">'ARHETZCYX'</span><span class="p">,</span> <span class="n" style="color: #333;">OmeXmlError</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1000" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1000
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<pre style="margin: 0;">+<span id="LC1000" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># more than 9 dimensions</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1001" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1001
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<pre style="margin: 0;">+<span id="LC1001" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">),</span> <span class="s" style="color: #d14;">'uint8'</span><span class="p">,</span></span>
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1002
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<pre style="margin: 0;">+<span id="LC1002" class="line" lang="python"> <span class="s" style="color: #d14;">'ARHETZCYXS'</span><span class="p">,</span> <span class="n" style="color: #333;">OmeXmlError</span><span class="p">),</span></span>
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1003
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<pre style="margin: 0;">+<span id="LC1003" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># double axis</span></span>
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1004
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<pre style="margin: 0;">+<span id="LC1004" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="s" style="color: #d14;">'uint8'</span><span class="p">,</span> <span class="s" style="color: #d14;">'YYX'</span><span class="p">,</span> <span class="n" style="color: #333;">OmeXmlError</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1005" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1005
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<pre style="margin: 0;">+<span id="LC1005" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># planecount mismatch</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1006" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1006
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<pre style="margin: 0;">+<span id="LC1006" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="s" style="color: #d14;">'uint8'</span><span class="p">,</span> <span class="s" style="color: #d14;">'CYX'</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">ValueError</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1007" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1007
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<pre style="margin: 0;">+<span id="LC1007" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># stored shape mismatch</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1008" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1008
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<pre style="margin: 0;">+<span id="LC1008" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="s" style="color: #d14;">'uint8'</span><span class="p">,</span> <span class="s" style="color: #d14;">'SYX'</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">ValueError</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1009" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1009
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<pre style="margin: 0;">+<span id="LC1009" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">),</span> <span class="s" style="color: #d14;">'uint8'</span><span class="p">,</span> <span class="s" style="color: #d14;">'YXS'</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">ValueError</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1010" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1010
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<pre style="margin: 0;">+<span id="LC1010" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">31</span><span class="p">,</span> <span class="mi" style="color: #099;">31</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="s" style="color: #d14;">'uint8'</span><span class="p">,</span> <span class="s" style="color: #d14;">'SYX'</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">ValueError</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1011" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1011
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<pre style="margin: 0;">+<span id="LC1011" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">31</span><span class="p">,</span> <span class="mi" style="color: #099;">31</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">),</span> <span class="s" style="color: #d14;">'uint8'</span><span class="p">,</span> <span class="s" style="color: #d14;">'YXS'</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">ValueError</span><span class="p">),</span></span>
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1012
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<pre style="margin: 0;">+<span id="LC1012" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">31</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="s" style="color: #d14;">'uint8'</span><span class="p">,</span> <span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">ValueError</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1013" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1013
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<pre style="margin: 0;">+<span id="LC1013" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># too many modulo dimensions</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1014" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1014
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<pre style="margin: 0;">+<span id="LC1014" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">60</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="s" style="color: #d14;">'uint8'</span><span class="p">,</span> <span class="s" style="color: #d14;">'RHEQYX'</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1015" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1015
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<pre style="margin: 0;">+<span id="LC1015" class="line" lang="python"> <span class="n" style="color: #333;">OmeXmlError</span><span class="p">),</span></span>
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1016
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<pre style="margin: 0;">+<span id="LC1016" class="line" lang="python"> <span class="p">]</span></span>
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1017
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<pre style="margin: 0;">+<span id="LC1017" class="line" lang="python"><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1018" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1018
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<pre style="margin: 0;">+<span id="LC1018" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_class_omexml_fail</span><span class="p">(</span><span class="n" style="color: #333;">shape</span><span class="p">,</span> <span class="n" style="color: #333;">storedshape</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="p">,</span> <span class="n" style="color: #333;">axes</span><span class="p">,</span> <span class="n" style="color: #333;">error</span><span class="p">):</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1019" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1019
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<pre style="margin: 0;">+<span id="LC1019" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test OmeXml class failures."""</span></span>
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1020
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<pre style="margin: 0;">+<span id="LC1020" class="line" lang="python"> <span class="n" style="color: #333;">metadata</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{</span><span class="s" style="color: #d14;">'axes'</span><span class="p">:</span> <span class="n" style="color: #333;">axes</span><span class="p">}</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">axes</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{}</span></span>
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1021
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<pre style="margin: 0;">+<span id="LC1021" class="line" lang="python"> <span class="n" style="color: #333;">ox</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">OmeXml</span><span class="p">()</span></span>
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1022
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<pre style="margin: 0;">+<span id="LC1022" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">raises</span><span class="p">(</span><span class="n" style="color: #333;">error</span><span class="p">):</span></span>
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1023
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<pre style="margin: 0;">+<span id="LC1023" class="line" lang="python"> <span class="n" style="color: #333;">ox</span><span class="p">.</span><span class="n" style="color: #333;">addimage</span><span class="p">(</span><span class="n" style="color: #333;">dtype</span><span class="p">,</span> <span class="n" style="color: #333;">shape</span><span class="p">,</span> <span class="n" style="color: #333;">storedshape</span><span class="p">,</span> <span class="o" style="font-weight: 600;">**</span><span class="n" style="color: #333;">metadata</span><span class="p">)</span></span>
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1024
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<pre style="margin: 0;">+<span id="LC1024" class="line" lang="python"></span>
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1025
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<pre style="margin: 0;">+<span id="LC1025" class="line" lang="python"></span>
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1026
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<pre style="margin: 0;">+<span id="LC1026" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">mark</span><span class="p">.</span><span class="n" style="color: #333;">parametrize</span><span class="p">(</span></span>
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1027
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<pre style="margin: 0;">+<span id="LC1027" class="line" lang="python"> <span class="s" style="color: #d14;">'axes, autoaxes, shape, storedshape, dimorder'</span><span class="p">,</span></span>
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1028
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<pre style="margin: 0;">+<span id="LC1028" class="line" lang="python"> <span class="p">[</span></span>
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1029
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<pre style="margin: 0;">+<span id="LC1029" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">'YX'</span><span class="p">,</span> <span class="s" style="color: #d14;">'YX'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="s" style="color: #d14;">'XYCZT'</span><span class="p">),</span></span>
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1030
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<pre style="margin: 0;">+<span id="LC1030" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">'YXS'</span><span class="p">,</span> <span class="s" style="color: #d14;">'YXS'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="s" style="color: #d14;">'XYCZT'</span><span class="p">),</span></span>
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1031
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<pre style="margin: 0;">+<span id="LC1031" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">'SYX'</span><span class="p">,</span> <span class="s" style="color: #d14;">'SYX'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="s" style="color: #d14;">'XYCZT'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1032" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1032
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<pre style="margin: 0;">+<span id="LC1032" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">'YXS'</span><span class="p">,</span> <span class="s" style="color: #d14;">'YXS'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">),</span> <span class="s" style="color: #d14;">'XYCZT'</span><span class="p">),</span></span>
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1033
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<pre style="margin: 0;">+<span id="LC1033" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">'SYX'</span><span class="p">,</span> <span class="s" style="color: #d14;">'SYX'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="s" style="color: #d14;">'XYCZT'</span><span class="p">),</span></span>
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1034
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<pre style="margin: 0;">+<span id="LC1034" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">'CYX'</span><span class="p">,</span> <span class="s" style="color: #d14;">'CYX'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="s" style="color: #d14;">'XYCZT'</span><span class="p">),</span></span>
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1035
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<pre style="margin: 0;">+<span id="LC1035" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">'CYXS'</span><span class="p">,</span> <span class="s" style="color: #d14;">'CYXS'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="s" style="color: #d14;">'XYCZT'</span><span class="p">),</span></span>
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<pre style="margin: 0;">+<span id="LC1036" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">'CSYX'</span><span class="p">,</span> <span class="s" style="color: #d14;">'ZCYX'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="s" style="color: #d14;">'XYCZT'</span><span class="p">),</span> <span class="c1" style="color: #998; font-style: italic;"># !</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1037" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1037
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<pre style="margin: 0;">+<span id="LC1037" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">'CYXS'</span><span class="p">,</span> <span class="s" style="color: #d14;">'CYXS'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">),</span> <span class="s" style="color: #d14;">'XYCZT'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1038" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1038
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<pre style="margin: 0;">+<span id="LC1038" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">'CSYX'</span><span class="p">,</span> <span class="s" style="color: #d14;">'CSYX'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="s" style="color: #d14;">'XYCZT'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1039" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1039
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<pre style="margin: 0;">+<span id="LC1039" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">'TZCYX'</span><span class="p">,</span> <span class="s" style="color: #d14;">'TZCYX'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">60</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="s" style="color: #d14;">'XYCZT'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1040" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1040
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<pre style="margin: 0;">+<span id="LC1040" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">'TZCYXS'</span><span class="p">,</span> <span class="s" style="color: #d14;">'TZCYXS'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">60</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1041" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1041
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<pre style="margin: 0;">+<span id="LC1041" class="line" lang="python"> <span class="s" style="color: #d14;">'XYCZT'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1042" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1042
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<pre style="margin: 0;">+<span id="LC1042" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">'TZCSYX'</span><span class="p">,</span> <span class="s" style="color: #d14;">'TZCSYX'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">60</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1043" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1043
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<pre style="margin: 0;">+<span id="LC1043" class="line" lang="python"> <span class="s" style="color: #d14;">'XYCZT'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1044" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1044
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<pre style="margin: 0;">+<span id="LC1044" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">'TZCYXS'</span><span class="p">,</span> <span class="s" style="color: #d14;">'TZCYXS'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">60</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1045" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1045
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<pre style="margin: 0;">+<span id="LC1045" class="line" lang="python"> <span class="s" style="color: #d14;">'XYCZT'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1046" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1046
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<pre style="margin: 0;">+<span id="LC1046" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">'ZTCSYX'</span><span class="p">,</span> <span class="s" style="color: #d14;">''</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">60</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="s" style="color: #d14;">'XYCTZ'</span><span class="p">),</span></span>
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1047
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<pre style="margin: 0;">+<span id="LC1047" class="line" lang="python"> <span class="p">]</span></span>
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1048
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<pre style="margin: 0;">+<span id="LC1048" class="line" lang="python"><span class="p">)</span></span>
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1049
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<pre style="margin: 0;">+<span id="LC1049" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">mark</span><span class="p">.</span><span class="n" style="color: #333;">parametrize</span><span class="p">(</span><span class="s" style="color: #d14;">'metadata'</span><span class="p">,</span> <span class="p">(</span><span class="s" style="color: #d14;">'axes'</span><span class="p">,</span> <span class="bp" style="color: #999;">None</span><span class="p">))</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1050" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1050
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<pre style="margin: 0;">+<span id="LC1050" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_class_omexml</span><span class="p">(</span><span class="n" style="color: #333;">axes</span><span class="p">,</span> <span class="n" style="color: #333;">autoaxes</span><span class="p">,</span> <span class="n" style="color: #333;">shape</span><span class="p">,</span> <span class="n" style="color: #333;">storedshape</span><span class="p">,</span> <span class="n" style="color: #333;">dimorder</span><span class="p">,</span> <span class="n" style="color: #333;">metadata</span><span class="p">):</span></span>
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1051
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<pre style="margin: 0;">+<span id="LC1051" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test OmeXml class."""</span></span>
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1052
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<pre style="margin: 0;">+<span id="LC1052" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'uint8'</span></span>
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1053
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<pre style="margin: 0;">+<span id="LC1053" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">metadata</span> <span class="ow" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">dimorder</span> <span class="o" style="font-weight: 600;">!=</span> <span class="s" style="color: #d14;">'XYCZT'</span><span class="p">:</span></span>
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1054
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<pre style="margin: 0;">+<span id="LC1054" class="line" lang="python"> <span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">xfail</span><span class="p">(</span><span class="s" style="color: #d14;">''</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1055" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1055
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<pre style="margin: 0;">+<span id="LC1055" class="line" lang="python"> <span class="n" style="color: #333;">metadata</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">dict</span><span class="p">(</span><span class="n" style="color: #333;">axes</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">axes</span><span class="p">)</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">metadata</span> <span class="k" style="font-weight: 600;">else</span> <span class="nb" style="color: #0086b3;">dict</span><span class="p">()</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1056" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1056
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<pre style="margin: 0;">+<span id="LC1056" class="line" lang="python"> <span class="n" style="color: #333;">omexml</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">OmeXml</span><span class="p">()</span></span>
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1057
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<pre style="margin: 0;">+<span id="LC1057" class="line" lang="python"> <span class="n" style="color: #333;">omexml</span><span class="p">.</span><span class="n" style="color: #333;">addimage</span><span class="p">(</span><span class="n" style="color: #333;">dtype</span><span class="p">,</span> <span class="n" style="color: #333;">shape</span><span class="p">,</span> <span class="n" style="color: #333;">storedshape</span><span class="p">,</span> <span class="o" style="font-weight: 600;">**</span><span class="n" style="color: #333;">metadata</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1058" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1058
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<pre style="margin: 0;">+<span id="LC1058" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="s" style="color: #d14;">'</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;"> '</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">str</span><span class="p">(</span><span class="n" style="color: #333;">omexml</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1059" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1059
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<pre style="margin: 0;">+<span id="LC1059" class="line" lang="python"> <span class="n" style="color: #333;">omexml</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">omexml</span><span class="p">.</span><span class="n" style="color: #333;">tostring</span><span class="p">()</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1060" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1060
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<pre style="margin: 0;">+<span id="LC1060" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">dimorder</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">omexml</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1061" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1061
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<pre style="margin: 0;">+<span id="LC1061" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">metadata</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1062" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1062
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<pre style="margin: 0;">+<span id="LC1062" class="line" lang="python"> <span class="n" style="color: #333;">autoaxes</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">axes</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1063" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1063
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<pre style="margin: 0;">+<span id="LC1063" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">ax</span> <span class="ow" style="font-weight: 600;">in</span> <span class="s" style="color: #d14;">'XYCZT'</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1064" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1064
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<pre style="margin: 0;">+<span id="LC1064" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">ax</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">autoaxes</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1065" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1065
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<pre style="margin: 0;">+<span id="LC1065" class="line" lang="python"> <span class="n" style="color: #333;">size</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">shape</span><span class="p">[</span><span class="n" style="color: #333;">autoaxes</span><span class="p">.</span><span class="n" style="color: #333;">index</span><span class="p">(</span><span class="n" style="color: #333;">ax</span><span class="p">)]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1066" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1066
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<pre style="margin: 0;">+<span id="LC1066" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1067" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1067
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<pre style="margin: 0;">+<span id="LC1067" class="line" lang="python"> <span class="n" style="color: #333;">size</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1068" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1068
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<pre style="margin: 0;">+<span id="LC1068" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">ax</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'C'</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1069" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1069
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<pre style="margin: 0;">+<span id="LC1069" class="line" lang="python"> <span class="n" style="color: #333;">size</span> <span class="o" style="font-weight: 600;">*=</span> <span class="n" style="color: #333;">storedshape</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">]</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">storedshape</span><span class="p">[</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1070" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1070
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<pre style="margin: 0;">+<span id="LC1070" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="s" style="color: #d14;">f'Size</span><span class="si" style="color: #d14;">{</span><span class="n" style="color: #333;">ax</span><span class="si" style="color: #d14;">}</span><span class="s" style="color: #d14;">="</span><span class="si" style="color: #d14;">{</span><span class="n" style="color: #333;">size</span><span class="si" style="color: #d14;">}</span><span class="s" style="color: #d14;">"'</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">omexml</span></span>
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1071
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<pre style="margin: 0;">+<span id="LC1071" class="line" lang="python"> <span class="n" style="color: #333;">assert_valid_omexml</span><span class="p">(</span><span class="n" style="color: #333;">omexml</span><span class="p">)</span></span>
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1072
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<pre style="margin: 0;">+<span id="LC1072" class="line" lang="python"></span>
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1073
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<pre style="margin: 0;">+<span id="LC1073" class="line" lang="python"></span>
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1074
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<pre style="margin: 0;">+<span id="LC1074" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">mark</span><span class="p">.</span><span class="n" style="color: #333;">parametrize</span><span class="p">(</span></span>
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1075
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<pre style="margin: 0;">+<span id="LC1075" class="line" lang="python"> <span class="s" style="color: #d14;">'axes, shape, storedshape, sizetzc, dimorder'</span><span class="p">,</span></span>
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1076
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<pre style="margin: 0;">+<span id="LC1076" class="line" lang="python"> <span class="p">[</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1077" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1077
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<pre style="margin: 0;">+<span id="LC1077" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">'ZAYX'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">12</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">12</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span></span>
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1078
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<pre style="margin: 0;">+<span id="LC1078" class="line" lang="python"> <span class="s" style="color: #d14;">'XYCZT'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1079" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1079
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<pre style="margin: 0;">+<span id="LC1079" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">'AYX'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1080" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1080
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<pre style="margin: 0;">+<span id="LC1080" class="line" lang="python"> <span class="s" style="color: #d14;">'XYCZT'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1081" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1081
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<pre style="margin: 0;">+<span id="LC1081" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">'APYX'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">12</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1082" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1082
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<pre style="margin: 0;">+<span id="LC1082" class="line" lang="python"> <span class="s" style="color: #d14;">'XYCZT'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1083" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1083
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<pre style="margin: 0;">+<span id="LC1083" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">'TAYX'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">12</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">12</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1084" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1084
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<pre style="margin: 0;">+<span id="LC1084" class="line" lang="python"> <span class="s" style="color: #d14;">'XYCZT'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1085" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1085
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<pre style="margin: 0;">+<span id="LC1085" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">'CHYXS'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">12</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">36</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1086" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1086
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<pre style="margin: 0;">+<span id="LC1086" class="line" lang="python"> <span class="s" style="color: #d14;">'XYCZT'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1087" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1087
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<pre style="margin: 0;">+<span id="LC1087" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">'CHSYX'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">12</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">36</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1088" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1088
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<pre style="margin: 0;">+<span id="LC1088" class="line" lang="python"> <span class="s" style="color: #d14;">'XYCZT'</span><span class="p">),</span></span>
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1089
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<pre style="margin: 0;">+<span id="LC1089" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">'APRYX'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">60</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">5</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1090" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1090
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<pre style="margin: 0;">+<span id="LC1090" class="line" lang="python"> <span class="s" style="color: #d14;">'XYCZT'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1091" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1091
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<pre style="margin: 0;">+<span id="LC1091" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">'TAPYX'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">60</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">12</span><span class="p">,</span> <span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1092" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1092
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<pre style="margin: 0;">+<span id="LC1092" class="line" lang="python"> <span class="s" style="color: #d14;">'XYCZT'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1093" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1093
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<pre style="margin: 0;">+<span id="LC1093" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">'TZAYX'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">60</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">20</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1094" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1094
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<pre style="margin: 0;">+<span id="LC1094" class="line" lang="python"> <span class="s" style="color: #d14;">'XYCZT'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1095" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1095
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<pre style="margin: 0;">+<span id="LC1095" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">'ZCHYX'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">60</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">20</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1096" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1096
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<pre style="margin: 0;">+<span id="LC1096" class="line" lang="python"> <span class="s" style="color: #d14;">'XYCZT'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1097" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1097
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<pre style="margin: 0;">+<span id="LC1097" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">'EPYX'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">10</span><span class="p">,</span> <span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">200</span><span class="p">,</span> <span class="mi" style="color: #099;">200</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">50</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">200</span><span class="p">,</span> <span class="mi" style="color: #099;">200</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">10</span><span class="p">,</span> <span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1098" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1098
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<pre style="margin: 0;">+<span id="LC1098" class="line" lang="python"> <span class="s" style="color: #d14;">'XYCZT'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1099" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1099
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<pre style="margin: 0;">+<span id="LC1099" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">'TQCPZRYX'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">6</span><span class="p">,</span> <span class="mi" style="color: #099;">7</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">5040</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span></span>
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1100
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<pre style="margin: 0;">+<span id="LC1100" class="line" lang="python"> <span class="p">(</span><span class="mi" style="color: #099;">6</span><span class="p">,</span> <span class="mi" style="color: #099;">42</span><span class="p">,</span> <span class="mi" style="color: #099;">20</span><span class="p">),</span> <span class="s" style="color: #d14;">'XYZCT'</span><span class="p">),</span></span>
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1101
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<pre style="margin: 0;">+<span id="LC1101" class="line" lang="python"> <span class="p">]</span></span>
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1102
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<pre style="margin: 0;">+<span id="LC1102" class="line" lang="python"><span class="p">)</span></span>
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1103
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<pre style="margin: 0;">+<span id="LC1103" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_class_omexml_modulo</span><span class="p">(</span><span class="n" style="color: #333;">axes</span><span class="p">,</span> <span class="n" style="color: #333;">shape</span><span class="p">,</span> <span class="n" style="color: #333;">storedshape</span><span class="p">,</span> <span class="n" style="color: #333;">sizetzc</span><span class="p">,</span> <span class="n" style="color: #333;">dimorder</span><span class="p">):</span></span>
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1104
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<pre style="margin: 0;">+<span id="LC1104" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test OmeXml class with modulo dimensions."""</span></span>
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1105
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<pre style="margin: 0;">+<span id="LC1105" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'uint8'</span></span>
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1106
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<pre style="margin: 0;">+<span id="LC1106" class="line" lang="python"> <span class="n" style="color: #333;">omexml</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">OmeXml</span><span class="p">()</span></span>
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1107
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<pre style="margin: 0;">+<span id="LC1107" class="line" lang="python"> <span class="n" style="color: #333;">omexml</span><span class="p">.</span><span class="n" style="color: #333;">addimage</span><span class="p">(</span><span class="n" style="color: #333;">dtype</span><span class="p">,</span> <span class="n" style="color: #333;">shape</span><span class="p">,</span> <span class="n" style="color: #333;">storedshape</span><span class="p">,</span> <span class="n" style="color: #333;">axes</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">axes</span><span class="p">)</span></span>
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1108
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<pre style="margin: 0;">+<span id="LC1108" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="s" style="color: #d14;">'</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;"> '</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">str</span><span class="p">(</span><span class="n" style="color: #333;">omexml</span><span class="p">)</span></span>
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1109
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<pre style="margin: 0;">+<span id="LC1109" class="line" lang="python"> <span class="n" style="color: #333;">omexml</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">omexml</span><span class="p">.</span><span class="n" style="color: #333;">tostring</span><span class="p">()</span></span>
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1110
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<pre style="margin: 0;">+<span id="LC1110" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">dimorder</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">omexml</span></span>
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1111
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<pre style="margin: 0;">+<span id="LC1111" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">ax</span><span class="p">,</span> <span class="n" style="color: #333;">size</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">zip</span><span class="p">(</span><span class="s" style="color: #d14;">'TZC'</span><span class="p">,</span> <span class="n" style="color: #333;">sizetzc</span><span class="p">):</span></span>
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1112
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<pre style="margin: 0;">+<span id="LC1112" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="s" style="color: #d14;">f'Size</span><span class="si" style="color: #d14;">{</span><span class="n" style="color: #333;">ax</span><span class="si" style="color: #d14;">}</span><span class="s" style="color: #d14;">="</span><span class="si" style="color: #d14;">{</span><span class="n" style="color: #333;">size</span><span class="si" style="color: #d14;">}</span><span class="s" style="color: #d14;">"'</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">omexml</span></span>
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1113
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<pre style="margin: 0;">+<span id="LC1113" class="line" lang="python"> <span class="n" style="color: #333;">assert_valid_omexml</span><span class="p">(</span><span class="n" style="color: #333;">omexml</span><span class="p">)</span></span>
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1114
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<pre style="margin: 0;">+<span id="LC1114" class="line" lang="python"></span>
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1115
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<pre style="margin: 0;">+<span id="LC1115" class="line" lang="python"></span>
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1116
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<pre style="margin: 0;">+<span id="LC1116" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_class_omexml_attributes</span><span class="p">():</span></span>
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1117
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<pre style="margin: 0;">+<span id="LC1117" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test OmeXml class with attributes and elements."""</span></span>
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1118
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<pre style="margin: 0;">+<span id="LC1118" class="line" lang="python"> <span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">uuid</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">uuid1</span> <span class="c1" style="color: #998; font-style: italic;"># noqa: delayed import</span></span>
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1119
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<pre style="margin: 0;">+<span id="LC1119" class="line" lang="python"></span>
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1120
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<pre style="margin: 0;">+<span id="LC1120" class="line" lang="python"> <span class="n" style="color: #333;">uuid</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">str</span><span class="p">(</span><span class="n" style="color: #333;">uuid1</span><span class="p">())</span></span>
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1121
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<pre style="margin: 0;">+<span id="LC1121" class="line" lang="python"> <span class="n" style="color: #333;">metadata</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">dict</span><span class="p">(</span></span>
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1122
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<pre style="margin: 0;">+<span id="LC1122" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># document</span></span>
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1123
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<pre style="margin: 0;">+<span id="LC1123" class="line" lang="python"> <span class="n" style="color: #333;">uuid</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">uuid</span><span class="p">,</span></span>
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1124
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<pre style="margin: 0;">+<span id="LC1124" class="line" lang="python"> <span class="n" style="color: #333;">Creator</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">f'test_tifffile.py </span><span class="si" style="color: #d14;">{</span><span class="n" style="color: #333;">tifffile</span><span class="p">.</span><span class="n" style="color: #333;">__version__</span><span class="si" style="color: #d14;">}</span><span class="s" style="color: #d14;">'</span><span class="p">,</span></span>
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1125
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<pre style="margin: 0;">+<span id="LC1125" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># image</span></span>
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1126
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<pre style="margin: 0;">+<span id="LC1126" class="line" lang="python"> <span class="n" style="color: #333;">axes</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'ZYXS'</span><span class="p">,</span></span>
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1127
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<pre style="margin: 0;">+<span id="LC1127" class="line" lang="python"> <span class="n" style="color: #333;">Name</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'ImageName'</span><span class="p">,</span></span>
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1128
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<pre style="margin: 0;">+<span id="LC1128" class="line" lang="python"> <span class="n" style="color: #333;">Acquisitiondate</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'2011-09-16T10:45:48'</span><span class="p">,</span></span>
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1129
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<pre style="margin: 0;">+<span id="LC1129" class="line" lang="python"> <span class="n" style="color: #333;">Description</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'Image "Description" < & ></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">{test}'</span><span class="p">,</span></span>
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1130
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<pre style="margin: 0;">+<span id="LC1130" class="line" lang="python"> <span class="n" style="color: #333;">SignificantBits</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">12</span><span class="p">,</span></span>
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1131
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<pre style="margin: 0;">+<span id="LC1131" class="line" lang="python"> <span class="n" style="color: #333;">PhysicalSizeX</span><span class="o" style="font-weight: 600;">=</span><span class="mf" style="color: #099;">1.1</span><span class="p">,</span></span>
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1132
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<pre style="margin: 0;">+<span id="LC1132" class="line" lang="python"> <span class="n" style="color: #333;">PhysicalSizeXUnit</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'nm'</span><span class="p">,</span></span>
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1133
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<pre style="margin: 0;">+<span id="LC1133" class="line" lang="python"> <span class="n" style="color: #333;">PhysicalSizeY</span><span class="o" style="font-weight: 600;">=</span><span class="mf" style="color: #099;">1.2</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC1134" class="line" lang="python"> <span class="n" style="color: #333;">PhysicalSizeYUnit</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'</span><span class="se" style="color: #d14;">\xb5</span><span class="s" style="color: #d14;">m'</span><span class="p">,</span></span>
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1135
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<pre style="margin: 0;">+<span id="LC1135" class="line" lang="python"> <span class="n" style="color: #333;">PhysicalSizeZ</span><span class="o" style="font-weight: 600;">=</span><span class="mf" style="color: #099;">1.3</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC1136" class="line" lang="python"> <span class="n" style="color: #333;">PhysicalSizeZUnit</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'</span><span class="se" style="color: #d14;">\xc5</span><span class="s" style="color: #d14;">'</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC1137" class="line" lang="python"> <span class="n" style="color: #333;">TimeIncrement</span><span class="o" style="font-weight: 600;">=</span><span class="mf" style="color: #099;">1.4</span><span class="p">,</span></span>
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1138
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<pre style="margin: 0;">+<span id="LC1138" class="line" lang="python"> <span class="n" style="color: #333;">TimeIncrementUnit</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'</span><span class="se" style="color: #d14;">\xb5</span><span class="s" style="color: #d14;">s'</span><span class="p">,</span></span>
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1139
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<pre style="margin: 0;">+<span id="LC1139" class="line" lang="python"> <span class="n" style="color: #333;">Channel</span><span class="o" style="font-weight: 600;">=</span><span class="nb" style="color: #0086b3;">dict</span><span class="p">(</span><span class="n" style="color: #333;">Name</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="s" style="color: #d14;">'ChannelName'</span><span class="p">]),</span> <span class="c1" style="color: #998; font-style: italic;"># one channel with 3 samples</span></span>
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1140
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<pre style="margin: 0;">+<span id="LC1140" class="line" lang="python"> <span class="n" style="color: #333;">Plane</span><span class="o" style="font-weight: 600;">=</span><span class="nb" style="color: #0086b3;">dict</span><span class="p">(</span><span class="n" style="color: #333;">PositionZ</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="mf" style="color: #099;">0.0</span><span class="p">,</span> <span class="mf" style="color: #099;">2.0</span><span class="p">,</span> <span class="mf" style="color: #099;">4.0</span><span class="p">]),</span> <span class="c1" style="color: #998; font-style: italic;"># 3 Z-planes</span></span>
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1141
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<pre style="margin: 0;">+<span id="LC1141" class="line" lang="python"> <span class="p">)</span></span>
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1142
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<pre style="margin: 0;">+<span id="LC1142" class="line" lang="python"></span>
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1143
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<pre style="margin: 0;">+<span id="LC1143" class="line" lang="python"> <span class="n" style="color: #333;">omexml</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">OmeXml</span><span class="p">(</span><span class="o" style="font-weight: 600;">**</span><span class="n" style="color: #333;">metadata</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC1144" class="line" lang="python"> <span class="n" style="color: #333;">omexml</span><span class="p">.</span><span class="n" style="color: #333;">addimage</span><span class="p">(</span><span class="s" style="color: #d14;">'uint16'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">),</span> <span class="o" style="font-weight: 600;">**</span><span class="n" style="color: #333;">metadata</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC1145" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="s" style="color: #d14;">'</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;"> '</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">str</span><span class="p">(</span><span class="n" style="color: #333;">omexml</span><span class="p">)</span></span>
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1146
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<pre style="margin: 0;">+<span id="LC1146" class="line" lang="python"> <span class="n" style="color: #333;">omexml</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">omexml</span><span class="p">.</span><span class="n" style="color: #333;">tostring</span><span class="p">()</span></span>
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1147
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<pre style="margin: 0;">+<span id="LC1147" class="line" lang="python"> <span class="n" style="color: #333;">assert_valid_omexml</span><span class="p">(</span><span class="n" style="color: #333;">omexml</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1148
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<pre style="margin: 0;">+<span id="LC1148" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">uuid</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">omexml</span></span>
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1149
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<pre style="margin: 0;">+<span id="LC1149" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="s" style="color: #d14;">'SignificantBits="12"'</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">omexml</span></span>
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1150
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<pre style="margin: 0;">+<span id="LC1150" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="s" style="color: #d14;">'SamplesPerPixel="3" Name="ChannelName"'</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">omexml</span></span>
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1151
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<pre style="margin: 0;">+<span id="LC1151" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="s" style="color: #d14;">'TheC="0" TheZ="2" TheT="0" PositionZ="4.0"'</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">omexml</span></span>
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1152
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<pre style="margin: 0;">+<span id="LC1152" class="line" lang="python"></span>
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1153
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<pre style="margin: 0;">+<span id="LC1153" class="line" lang="python"></span>
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1154
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<pre style="margin: 0;">+<span id="LC1154" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_class_omexml_multiimage</span><span class="p">():</span></span>
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1155
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<pre style="margin: 0;">+<span id="LC1155" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test OmeXml class with multiple images."""</span></span>
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1156
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<pre style="margin: 0;">+<span id="LC1156" class="line" lang="python"> <span class="n" style="color: #333;">omexml</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">OmeXml</span><span class="p">(</span><span class="n" style="color: #333;">description</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'multiimage'</span><span class="p">)</span></span>
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1157
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<pre style="margin: 0;">+<span id="LC1157" class="line" lang="python"> <span class="n" style="color: #333;">omexml</span><span class="p">.</span><span class="n" style="color: #333;">addimage</span><span class="p">(</span><span class="s" style="color: #d14;">'uint8'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">),</span> <span class="n" style="color: #333;">name</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'preview'</span><span class="p">)</span></span>
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1158
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<pre style="margin: 0;">+<span id="LC1158" class="line" lang="python"> <span class="n" style="color: #333;">omexml</span><span class="p">.</span><span class="n" style="color: #333;">addimage</span><span class="p">(</span><span class="s" style="color: #d14;">'float32'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">256</span><span class="p">,</span> <span class="mi" style="color: #099;">256</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">256</span><span class="p">,</span> <span class="mi" style="color: #099;">256</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="n" style="color: #333;">name</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'1'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1159
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<pre style="margin: 0;">+<span id="LC1159" class="line" lang="python"> <span class="n" style="color: #333;">omexml</span><span class="p">.</span><span class="n" style="color: #333;">addimage</span><span class="p">(</span><span class="s" style="color: #d14;">'bool'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">256</span><span class="p">,</span> <span class="mi" style="color: #099;">256</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">256</span><span class="p">,</span> <span class="mi" style="color: #099;">256</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="n" style="color: #333;">name</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'mask'</span><span class="p">)</span></span>
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1160
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<pre style="margin: 0;">+<span id="LC1160" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="s" style="color: #d14;">'</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;"> '</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">str</span><span class="p">(</span><span class="n" style="color: #333;">omexml</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1161" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1161
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<pre style="margin: 0;">+<span id="LC1161" class="line" lang="python"> <span class="n" style="color: #333;">omexml</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">omexml</span><span class="p">.</span><span class="n" style="color: #333;">tostring</span><span class="p">()</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1162
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<pre style="margin: 0;">+<span id="LC1162" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="s" style="color: #d14;">'TiffData IFD="0" PlaneCount="1"'</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">omexml</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1163
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<pre style="margin: 0;">+<span id="LC1163" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="s" style="color: #d14;">'TiffData IFD="1" PlaneCount="4"'</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">omexml</span></span>
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1164
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<pre style="margin: 0;">+<span id="LC1164" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="s" style="color: #d14;">'TiffData IFD="5" PlaneCount="1"'</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">omexml</span></span>
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1165
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<pre style="margin: 0;">+<span id="LC1165" class="line" lang="python"> <span class="n" style="color: #333;">assert_valid_omexml</span><span class="p">(</span><span class="n" style="color: #333;">omexml</span><span class="p">)</span></span>
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1166
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<pre style="margin: 0;">+<span id="LC1166" class="line" lang="python"></span>
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1167
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<pre style="margin: 0;">+<span id="LC1167" class="line" lang="python"></span>
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941
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1168
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<pre style="margin: 0;"> <span id="LC1168" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_func_xml2dict</span><span class="p">():</span></span>
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942
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1169
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<pre style="margin: 0;"> <span id="LC1169" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test xml2dict function."""</span></span>
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943
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1170
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<pre style="margin: 0;"> <span id="LC1170" class="line" lang="python"> <span class="n" style="color: #333;">d</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">xml2dict</span><span class="p">(</span><span class="s" style="color: #d14;">"""<?xml version="1.0" ?></span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="996" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -996,7 +1223,8 @@ def test_func_memmap_fail():</td>
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996
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1223
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<pre style="margin: 0;"> <span id="LC1223" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test non-native byteorder can not be memory mapped."""</span></span>
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997
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1224
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<pre style="margin: 0;"> <span id="LC1224" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TempFileName</span><span class="p">(</span><span class="s" style="color: #d14;">'memmap_fail'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">fname</span><span class="p">:</span></span>
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998
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1225
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<pre style="margin: 0;"> <span id="LC1225" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">raises</span><span class="p">(</span><span class="nb" style="color: #0086b3;">ValueError</span><span class="p">):</span></span>
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999
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<pre style="margin: 0;">-<span id="LC999" class="line" lang="python"> <span class="n" style="color: #333;">memmap</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">,</span> <span class="n" style="color: #333;">shape</span><span class="o" style="font-weight: 600;">=</span><span class="p">(</span><span class="mi" style="color: #099;">16</span><span class="p">,</span> <span class="mi" style="color: #099;">16</span><span class="p">),</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'float32'</span><span class="p">,</span> <span class="n" style="color: #333;">byteorder</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'>'</span><span class="p">)</span></span>
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1226
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<pre style="margin: 0;">+<span id="LC1226" class="line" lang="python"> <span class="n" style="color: #333;">memmap</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">,</span> <span class="n" style="color: #333;">shape</span><span class="o" style="font-weight: 600;">=</span><span class="p">(</span><span class="mi" style="color: #099;">16</span><span class="p">,</span> <span class="mi" style="color: #099;">16</span><span class="p">),</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'float32'</span><span class="p">,</span></span>
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1227
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<pre style="margin: 0;">+<span id="LC1227" class="line" lang="python"> <span class="n" style="color: #333;">byteorder</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'>'</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">sys</span><span class="p">.</span><span class="n" style="color: #333;">byteorder</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'little'</span> <span class="k" style="font-weight: 600;">else</span> <span class="s" style="color: #d14;">'<'</span><span class="p">)</span></span>
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1000
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1228
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<pre style="margin: 0;"> <span id="LC1228" class="line" lang="python"></span>
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1001
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1229
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<pre style="margin: 0;"> <span id="LC1229" class="line" lang="python"></span>
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1002
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1230
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<pre style="margin: 0;"> <span id="LC1230" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_func_repeat_nd</span><span class="p">():</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1014" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1242" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1014,10 +1242,14 @@ def test_func_repeat_nd():</td>
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1014
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1242
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<pre style="margin: 0;"> <span id="LC1242" class="line" lang="python"></span>
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1015
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1243
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<pre style="margin: 0;"> <span id="LC1243" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_func_byteorder_isnative</span><span class="p">():</span></span>
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1016
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1244
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<pre style="margin: 0;"> <span id="LC1244" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test byteorder_isnative function."""</span></span>
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1017
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<pre style="margin: 0;">-<span id="LC1017" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">byteorder_isnative</span><span class="p">(</span><span class="s" style="color: #d14;">'>'</span><span class="p">)</span></span>
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1018
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<pre style="margin: 0;">-<span id="LC1018" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">byteorder_isnative</span><span class="p">(</span><span class="s" style="color: #d14;">'<'</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC1019" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">byteorder_isnative</span><span class="p">(</span><span class="s" style="color: #d14;">'='</span><span class="p">)</span></span>
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1245
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<pre style="margin: 0;"> <span id="LC1245" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">byteorder_isnative</span><span class="p">(</span><span class="n" style="color: #333;">sys</span><span class="p">.</span><span class="n" style="color: #333;">byteorder</span><span class="p">)</span></span>
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1246
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<pre style="margin: 0;">+<span id="LC1246" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">byteorder_isnative</span><span class="p">(</span><span class="s" style="color: #d14;">'='</span><span class="p">)</span></span>
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1247
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<pre style="margin: 0;">+<span id="LC1247" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">sys</span><span class="p">.</span><span class="n" style="color: #333;">byteorder</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'little'</span><span class="p">:</span></span>
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1248
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<pre style="margin: 0;">+<span id="LC1248" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">byteorder_isnative</span><span class="p">(</span><span class="s" style="color: #d14;">'<'</span><span class="p">)</span></span>
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1249
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<pre style="margin: 0;">+<span id="LC1249" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">byteorder_isnative</span><span class="p">(</span><span class="s" style="color: #d14;">'>'</span><span class="p">)</span></span>
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1250
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<pre style="margin: 0;">+<span id="LC1250" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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1251
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<pre style="margin: 0;">+<span id="LC1251" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">byteorder_isnative</span><span class="p">(</span><span class="s" style="color: #d14;">'>'</span><span class="p">)</span></span>
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1252
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<pre style="margin: 0;">+<span id="LC1252" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">byteorder_isnative</span><span class="p">(</span><span class="s" style="color: #d14;">'<'</span><span class="p">)</span></span>
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1021
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1253
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<pre style="margin: 0;"> <span id="LC1253" class="line" lang="python"></span>
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1254
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<pre style="margin: 0;"> <span id="LC1254" class="line" lang="python"></span>
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1255
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<pre style="margin: 0;"> <span id="LC1255" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_func_reshape_nd</span><span class="p">():</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1147,6 +1379,11 @@ def test_func_natural_sorted():</td>
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1379
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<pre style="margin: 0;"> <span id="LC1379" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_func_stripnull</span><span class="p">():</span></span>
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1148
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1380
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<pre style="margin: 0;"> <span id="LC1380" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test stripnull function."""</span></span>
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1381
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<pre style="margin: 0;"> <span id="LC1381" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">stripnull</span><span class="p">(</span><span class="s" style="color: #d14;">b'string</span><span class="se" style="color: #d14;">\x00</span><span class="s" style="color: #d14;">'</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">b'string'</span></span>
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1382
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<pre style="margin: 0;">+<span id="LC1382" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">stripnull</span><span class="p">(</span><span class="s" style="color: #d14;">'string</span><span class="se" style="color: #d14;">\x00</span><span class="s" style="color: #d14;">'</span><span class="p">,</span> <span class="n" style="color: #333;">null</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'</span><span class="se" style="color: #d14;">\0</span><span class="s" style="color: #d14;">'</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'string'</span></span>
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1383
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<pre style="margin: 0;">+<span id="LC1383" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">stripnull</span><span class="p">(</span><span class="s" style="color: #d14;">b'string</span><span class="se" style="color: #d14;">\x00</span><span class="s" style="color: #d14;">string</span><span class="se" style="color: #d14;">\x00\x00</span><span class="s" style="color: #d14;">'</span><span class="p">,</span> <span class="n" style="color: #333;">first</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span></span>
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1384
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<pre style="margin: 0;">+<span id="LC1384" class="line" lang="python"> <span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">b'string</span><span class="se" style="color: #d14;">\x00</span><span class="s" style="color: #d14;">string'</span></span>
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1385
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<pre style="margin: 0;">+<span id="LC1385" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">stripnull</span><span class="p">(</span><span class="s" style="color: #d14;">'string</span><span class="se" style="color: #d14;">\x00</span><span class="s" style="color: #d14;">string</span><span class="se" style="color: #d14;">\x00\x00</span><span class="s" style="color: #d14;">'</span><span class="p">,</span> <span class="n" style="color: #333;">null</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'</span><span class="se" style="color: #d14;">\0</span><span class="s" style="color: #d14;">'</span><span class="p">,</span> <span class="n" style="color: #333;">first</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span></span>
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1386
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<pre style="margin: 0;">+<span id="LC1386" class="line" lang="python"> <span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'string</span><span class="se" style="color: #d14;">\x00</span><span class="s" style="color: #d14;">string'</span></span>
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1387
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<pre style="margin: 0;"> <span id="LC1387" class="line" lang="python"></span>
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1151
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1388
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<pre style="margin: 0;"> <span id="LC1388" class="line" lang="python"></span>
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1389
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<pre style="margin: 0;"> <span id="LC1389" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_func_stripascii</span><span class="p">():</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1415" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1178,6 +1415,37 @@ def test_func_transpose_axes():</td>
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1178
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1415
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<pre style="margin: 0;"> <span id="LC1415" class="line" lang="python"> <span class="n" style="color: #333;">asaxes</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'CTZYX'</span><span class="p">).</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">)</span></span>
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1179
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1416
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<pre style="margin: 0;"> <span id="LC1416" class="line" lang="python"></span>
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1180
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1417
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<pre style="margin: 0;"> <span id="LC1417" class="line" lang="python"></span>
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<td class="diff-line-num new new_line" data-linenumber="1418" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1418
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<pre style="margin: 0;">+<span id="LC1418" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_func_subresolution</span><span class="p">():</span></span>
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1419
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<pre style="margin: 0;">+<span id="LC1419" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test subresolution function."""</span></span>
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1420
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<pre style="margin: 0;">+<span id="LC1420" class="line" lang="python"> <span class="k" style="font-weight: 600;">class</span> <span class="nc" style="color: #458; font-weight: 600;">a</span><span class="p">:</span></span>
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1421
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<pre style="margin: 0;">+<span id="LC1421" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'uint8'</span></span>
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1422
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<pre style="margin: 0;">+<span id="LC1422" class="line" lang="python"> <span class="n" style="color: #333;">axes</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'QzyxS'</span></span>
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1423
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<pre style="margin: 0;">+<span id="LC1423" class="line" lang="python"> <span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">256</span><span class="p">,</span> <span class="mi" style="color: #099;">512</span><span class="p">,</span> <span class="mi" style="color: #099;">1024</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">)</span></span>
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1424
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<pre style="margin: 0;">+<span id="LC1424" class="line" lang="python"></span>
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1425
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<pre style="margin: 0;">+<span id="LC1425" class="line" lang="python"> <span class="k" style="font-weight: 600;">class</span> <span class="nc" style="color: #458; font-weight: 600;">b</span><span class="p">:</span></span>
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1426
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<pre style="margin: 0;">+<span id="LC1426" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'uint8'</span></span>
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1427
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<pre style="margin: 0;">+<span id="LC1427" class="line" lang="python"> <span class="n" style="color: #333;">axes</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'QzyxS'</span></span>
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1428
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<pre style="margin: 0;">+<span id="LC1428" class="line" lang="python"> <span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">128</span><span class="p">,</span> <span class="mi" style="color: #099;">256</span><span class="p">,</span> <span class="mi" style="color: #099;">512</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">)</span></span>
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1429
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<pre style="margin: 0;">+<span id="LC1429" class="line" lang="python"></span>
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<td class="diff-line-num new new_line" data-linenumber="1430" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1430
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<pre style="margin: 0;">+<span id="LC1430" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">subresolution</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="p">,</span> <span class="n" style="color: #333;">a</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">0</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1431" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1431
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<pre style="margin: 0;">+<span id="LC1431" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">subresolution</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="p">,</span> <span class="n" style="color: #333;">b</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span></span>
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1432
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<pre style="margin: 0;">+<span id="LC1432" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">subresolution</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="p">,</span> <span class="n" style="color: #333;">b</span><span class="p">,</span> <span class="n" style="color: #333;">p</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="n" style="color: #333;">n</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">2</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1433" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1433
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<pre style="margin: 0;">+<span id="LC1433" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">subresolution</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="p">,</span> <span class="n" style="color: #333;">b</span><span class="p">,</span> <span class="n" style="color: #333;">p</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">3</span><span class="p">)</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1434" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1434
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<pre style="margin: 0;">+<span id="LC1434" class="line" lang="python"> <span class="n" style="color: #333;">b</span><span class="p">.</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">86</span><span class="p">,</span> <span class="mi" style="color: #099;">171</span><span class="p">,</span> <span class="mi" style="color: #099;">342</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1435" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1435
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<pre style="margin: 0;">+<span id="LC1435" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">subresolution</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="p">,</span> <span class="n" style="color: #333;">b</span><span class="p">,</span> <span class="n" style="color: #333;">p</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">3</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1436" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1436
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<pre style="margin: 0;">+<span id="LC1436" class="line" lang="python"> <span class="n" style="color: #333;">b</span><span class="p">.</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">128</span><span class="p">,</span> <span class="mi" style="color: #099;">256</span><span class="p">,</span> <span class="mi" style="color: #099;">512</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1437" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1437
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<pre style="margin: 0;">+<span id="LC1437" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">subresolution</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="p">,</span> <span class="n" style="color: #333;">b</span><span class="p">)</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span></span>
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1438
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<pre style="margin: 0;">+<span id="LC1438" class="line" lang="python"> <span class="n" style="color: #333;">b</span><span class="p">.</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">64</span><span class="p">,</span> <span class="mi" style="color: #099;">256</span><span class="p">,</span> <span class="mi" style="color: #099;">512</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1439" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1439
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<pre style="margin: 0;">+<span id="LC1439" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">subresolution</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="p">,</span> <span class="n" style="color: #333;">b</span><span class="p">)</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span></span>
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1440
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<pre style="margin: 0;">+<span id="LC1440" class="line" lang="python"> <span class="n" style="color: #333;">b</span><span class="p">.</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">128</span><span class="p">,</span> <span class="mi" style="color: #099;">64</span><span class="p">,</span> <span class="mi" style="color: #099;">512</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1441" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1441
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<pre style="margin: 0;">+<span id="LC1441" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">subresolution</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="p">,</span> <span class="n" style="color: #333;">b</span><span class="p">)</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span></span>
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1442
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<pre style="margin: 0;">+<span id="LC1442" class="line" lang="python"> <span class="n" style="color: #333;">b</span><span class="p">.</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">128</span><span class="p">,</span> <span class="mi" style="color: #099;">256</span><span class="p">,</span> <span class="mi" style="color: #099;">1024</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1443" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1443
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<pre style="margin: 0;">+<span id="LC1443" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">subresolution</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="p">,</span> <span class="n" style="color: #333;">b</span><span class="p">)</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1444" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1444
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<pre style="margin: 0;">+<span id="LC1444" class="line" lang="python"> <span class="n" style="color: #333;">b</span><span class="p">.</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">64</span><span class="p">,</span> <span class="mi" style="color: #099;">128</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1445" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1445
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<pre style="margin: 0;">+<span id="LC1445" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">subresolution</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="p">,</span> <span class="n" style="color: #333;">b</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">3</span></span>
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1446
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<pre style="margin: 0;">+<span id="LC1446" class="line" lang="python"></span>
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1447
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<pre style="margin: 0;">+<span id="LC1447" class="line" lang="python"></span>
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1448
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<pre style="margin: 0;">+<span id="LC1448" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">mark</span><span class="p">.</span><span class="n" style="color: #333;">skipif</span><span class="p">(</span><span class="n" style="color: #333;">SKIP_BE</span><span class="p">,</span> <span class="n" style="color: #333;">reason</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">REASON</span><span class="p">)</span></span>
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1181
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1449
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<pre style="margin: 0;"> <span id="LC1449" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_func_unpack_rgb</span><span class="p">():</span></span>
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1182
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1450
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<pre style="margin: 0;"> <span id="LC1450" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test unpack_rgb function."""</span></span>
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1183
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1451
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<pre style="margin: 0;"> <span id="LC1451" class="line" lang="python"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">struct</span><span class="p">.</span><span class="n" style="color: #333;">pack</span><span class="p">(</span><span class="s" style="color: #d14;">'BBBB'</span><span class="p">,</span> <span class="mh" style="color: #099;">0x21</span><span class="p">,</span> <span class="mh" style="color: #099;">0x08</span><span class="p">,</span> <span class="mh" style="color: #099;">0xFF</span><span class="p">,</span> <span class="mh" style="color: #099;">0xFF</span><span class="p">)</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1460" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1192,7 +1460,7 @@ def test_func_unpack_rgb():</td>
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1192
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1460
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<pre style="margin: 0;"> <span id="LC1460" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_func_json_description</span><span class="p">():</span></span>
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1193
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1461
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<pre style="margin: 0;"> <span id="LC1461" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test json_description function."""</span></span>
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1194
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1462
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<pre style="margin: 0;"> <span id="LC1462" class="line" lang="python"> <span class="n" style="color: #333;">descr</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">json_description</span><span class="p">((</span><span class="mi" style="color: #099;">256</span><span class="p">,</span> <span class="mi" style="color: #099;">256</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">),</span> <span class="n" style="color: #333;">axes</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'YXS'</span><span class="p">)</span></span>
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1195
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<pre style="margin: 0;">-<span id="LC1195" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">json</span><span class="p">.</span><span class="n" style="color: #333;">loads</span><span class="p">(</span><span class="n" style="color: #333;">descr</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">{</span><span class="s" style="color: #d14;"><span class="idiff left">"shape"</span></span><span class="p"><span class="idiff">:</span></span><span class="idiff"> </span><span class="p"><span class="idiff">[</span></span><span class="mi" style="color: #099;"><span class="idiff">256</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">256</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">3</span></span><span class="p"><span class="idiff">],</span></span><span class="idiff"> </span><span class="s" style="color: #d14;"><span class="idiff">"axes"</span></span><span class="p"><span class="idiff">:</span></span><span class="idiff"> </span><span class="s" style="color: #d14;"><span class="idiff right">"YXS"</span></span><span class="p">}</span></span>
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1463
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<pre style="margin: 0;">+<span id="LC1463" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">json</span><span class="p">.</span><span class="n" style="color: #333;">loads</span><span class="p">(</span><span class="n" style="color: #333;">descr</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">{</span><span class="s" style="color: #d14;"><span class="idiff left">'shape'</span></span><span class="p"><span class="idiff">:</span></span><span class="idiff"> </span><span class="p"><span class="idiff">[</span></span><span class="mi" style="color: #099;"><span class="idiff">256</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">256</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">3</span></span><span class="p"><span class="idiff">],</span></span><span class="idiff"> </span><span class="s" style="color: #d14;"><span class="idiff">'axes'</span></span><span class="p"><span class="idiff">:</span></span><span class="idiff"> </span><span class="s" style="color: #d14;"><span class="idiff right">'YXS'</span></span><span class="p">}</span></span>
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1196
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1464
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<pre style="margin: 0;"> <span id="LC1464" class="line" lang="python"></span>
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1197
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1465
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<pre style="margin: 0;"> <span id="LC1465" class="line" lang="python"></span>
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1198
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1466
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<pre style="margin: 0;"> <span id="LC1466" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_func_json_description_metadata</span><span class="p">():</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1668" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1400,6 +1668,22 @@ def test_func_hexdump():</td>
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1400
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1668
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<pre style="margin: 0;"> <span id="LC1668" class="line" lang="python"> <span class="s" style="color: #d14;">'................'</span><span class="p">)</span></span>
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1401
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1669
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<pre style="margin: 0;"> <span id="LC1669" class="line" lang="python"></span>
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1402
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1670
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<pre style="margin: 0;"> <span id="LC1670" class="line" lang="python"></span>
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1671
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<pre style="margin: 0;">+<span id="LC1671" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_func_asbool</span><span class="p">():</span></span>
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1672
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<pre style="margin: 0;">+<span id="LC1672" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test asbool function."""</span></span>
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1673
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<pre style="margin: 0;">+<span id="LC1673" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">true</span> <span class="ow" style="font-weight: 600;">in</span> <span class="p">(</span><span class="s" style="color: #d14;">'TRUE'</span><span class="p">,</span> <span class="s" style="color: #d14;">' True '</span><span class="p">,</span> <span class="s" style="color: #d14;">'true '</span><span class="p">):</span></span>
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1674
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<pre style="margin: 0;">+<span id="LC1674" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">asbool</span><span class="p">(</span><span class="n" style="color: #333;">true</span><span class="p">)</span></span>
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1675
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<pre style="margin: 0;">+<span id="LC1675" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">asbool</span><span class="p">(</span><span class="n" style="color: #333;">true</span><span class="p">.</span><span class="n" style="color: #333;">encode</span><span class="p">())</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1676" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1676
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<pre style="margin: 0;">+<span id="LC1676" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">false</span> <span class="ow" style="font-weight: 600;">in</span> <span class="p">(</span><span class="s" style="color: #d14;">'FALSE'</span><span class="p">,</span> <span class="s" style="color: #d14;">' False '</span><span class="p">,</span> <span class="s" style="color: #d14;">'false '</span><span class="p">):</span></span>
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1677
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<pre style="margin: 0;">+<span id="LC1677" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">asbool</span><span class="p">(</span><span class="n" style="color: #333;">false</span><span class="p">)</span></span>
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1678
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<pre style="margin: 0;">+<span id="LC1678" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">asbool</span><span class="p">(</span><span class="n" style="color: #333;">false</span><span class="p">.</span><span class="n" style="color: #333;">encode</span><span class="p">())</span></span>
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1679
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<pre style="margin: 0;">+<span id="LC1679" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">asbool</span><span class="p">(</span><span class="s" style="color: #d14;">'ON'</span><span class="p">,</span> <span class="p">[</span><span class="s" style="color: #d14;">'on'</span><span class="p">],</span> <span class="p">[</span><span class="s" style="color: #d14;">'off'</span><span class="p">])</span></span>
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1680
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<pre style="margin: 0;">+<span id="LC1680" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">asbool</span><span class="p">(</span><span class="s" style="color: #d14;">'ON'</span><span class="p">,</span> <span class="s" style="color: #d14;">'on'</span><span class="p">,</span> <span class="s" style="color: #d14;">'off'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1681" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1681
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<pre style="margin: 0;">+<span id="LC1681" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">raises</span><span class="p">(</span><span class="nb" style="color: #0086b3;">TypeError</span><span class="p">):</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1682" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1682
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<pre style="margin: 0;">+<span id="LC1682" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">asbool</span><span class="p">(</span><span class="s" style="color: #d14;">'Yes'</span><span class="p">)</span></span>
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1683
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<pre style="margin: 0;">+<span id="LC1683" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">raises</span><span class="p">(</span><span class="nb" style="color: #0086b3;">TypeError</span><span class="p">):</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1684" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1684
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<pre style="margin: 0;">+<span id="LC1684" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">asbool</span><span class="p">(</span><span class="s" style="color: #d14;">'True'</span><span class="p">,</span> <span class="p">[</span><span class="s" style="color: #d14;">'on'</span><span class="p">],</span> <span class="p">[</span><span class="s" style="color: #d14;">'off'</span><span class="p">])</span></span>
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1685
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<pre style="margin: 0;">+<span id="LC1685" class="line" lang="python"></span>
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1686
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<pre style="margin: 0;">+<span id="LC1686" class="line" lang="python"></span>
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1403
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1687
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<pre style="margin: 0;"> <span id="LC1687" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_func_snipstr</span><span class="p">():</span></span>
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1404
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1688
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<pre style="margin: 0;"> <span id="LC1688" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test snipstr function."""</span></span>
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1405
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1689
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<pre style="margin: 0;"> <span id="LC1689" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># cut middle</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1849" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1849,7 +2133,7 @@ def test_filehandle_bytesio():</td>
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1849
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2133
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<pre style="margin: 0;"> <span id="LC2133" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="nb" style="color: #0086b3;">open</span><span class="p">(</span><span class="n" style="color: #333;">FILEHANDLE_NAME</span><span class="p">,</span> <span class="s" style="color: #d14;">'rb'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">fh</span><span class="p">:</span></span>
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1850
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2134
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<pre style="margin: 0;"> <span id="LC2134" class="line" lang="python"> <span class="n" style="color: #333;">stream</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">BytesIO</span><span class="p">(</span><span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="n" style="color: #333;">read</span><span class="p">())</span></span>
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1851
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<td class="diff-line-num new_line" data-linenumber="2135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2135
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<pre style="margin: 0;"> <span id="LC2135" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">FileHandle</span><span class="p">(</span><span class="n" style="color: #333;">stream</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">fh</span><span class="p">:</span></span>
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1852
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<td class="diff-line-num new_line old" data-linenumber="2136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1852" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="n" style="color: #333;">name</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;"><span class="idiff left right">"Unnamed binary stream"</span></span></span>
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2136
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<pre style="margin: 0;">+<span id="LC2136" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="n" style="color: #333;">name</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;"><span class="idiff left right">'Unnamed binary stream'</span></span></span>
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1853
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2137
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<pre style="margin: 0;"> <span id="LC2137" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="n" style="color: #333;">is_file</span></span>
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1854
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2138
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<pre style="margin: 0;"> <span id="LC2138" class="line" lang="python"> <span class="n" style="color: #333;">assert_filehandle</span><span class="p">(</span><span class="n" style="color: #333;">fh</span><span class="p">)</span></span>
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1855
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2139
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<pre style="margin: 0;"> <span id="LC2139" class="line" lang="python"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1861" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1861,7 +2145,7 @@ def test_filehandle_bytesio_offset():</td>
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1861
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2145
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<pre style="margin: 0;"> <span id="LC2145" class="line" lang="python"> <span class="n" style="color: #333;">stream</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">BytesIO</span><span class="p">(</span><span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="n" style="color: #333;">read</span><span class="p">())</span></span>
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1862
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<td class="diff-line-num new_line" data-linenumber="2146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2146
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<pre style="margin: 0;"> <span id="LC2146" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">FileHandle</span><span class="p">(</span><span class="n" style="color: #333;">stream</span><span class="p">,</span> <span class="n" style="color: #333;">offset</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">FILEHANDLE_OFFSET</span><span class="p">,</span></span>
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1863
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<td class="diff-line-num new_line" data-linenumber="2147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2147
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<pre style="margin: 0;"> <span id="LC2147" class="line" lang="python"> <span class="n" style="color: #333;">size</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">FILEHANDLE_LENGTH</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">fh</span><span class="p">:</span></span>
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1864
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<td class="diff-line-num new_line old" data-linenumber="2148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1864" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="n" style="color: #333;">name</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;"><span class="idiff left right">"Unnamed binary stream"</span></span></span>
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2148
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<pre style="margin: 0;">+<span id="LC2148" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="n" style="color: #333;">name</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;"><span class="idiff left right">'Unnamed binary stream'</span></span></span>
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1865
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2149
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<pre style="margin: 0;"> <span id="LC2149" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="n" style="color: #333;">is_file</span></span>
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1866
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2150
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<pre style="margin: 0;"> <span id="LC2150" class="line" lang="python"> <span class="n" style="color: #333;">assert_filehandle</span><span class="p">(</span><span class="n" style="color: #333;">fh</span><span class="p">,</span> <span class="n" style="color: #333;">offset</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">FILEHANDLE_OFFSET</span><span class="p">)</span></span>
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1867
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2151
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<pre style="margin: 0;"> <span id="LC2151" class="line" lang="python"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2293" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2577" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2293,7 +2577,7 @@ def test_read_vips():</td>
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2293
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2577
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<pre style="margin: 0;"> <span id="LC2577" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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2294
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<td class="diff-line-num new_line" data-linenumber="2578" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2578
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<pre style="margin: 0;"> <span id="LC2578" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">byteorder</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'<'</span></span>
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<td class="diff-line-num old_line" data-linenumber="2295" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2295
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<td class="diff-line-num new_line" data-linenumber="2579" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2579
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<pre style="margin: 0;"> <span id="LC2579" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">4</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2296" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2296
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<td class="diff-line-num new_line old" data-linenumber="2580" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2296" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;"><span class="idiff left right">4</span></span></span>
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2580
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<pre style="margin: 0;">+<span id="LC2580" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;"><span class="idiff left right">1</span></span></span>
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2297
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2581
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<pre style="margin: 0;"> <span id="LC2581" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># assert page properties</span></span>
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2298
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2582
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<pre style="margin: 0;"> <span id="LC2582" class="line" lang="python"> <span class="n" style="color: #333;">page</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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2299
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2583
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<pre style="margin: 0;"> <span id="LC2583" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">is_reduced</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2305" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2589" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2305,10 +2589,13 @@ def test_read_vips():</td>
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2305
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2589
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<pre style="margin: 0;"> <span id="LC2589" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">samplesperpixel</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">3</span></span>
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2306
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2590
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<pre style="margin: 0;"> <span id="LC2590" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># assert series properties</span></span>
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2307
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2591
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<pre style="margin: 0;"> <span id="LC2591" class="line" lang="python"> <span class="n" style="color: #333;">series</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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2592
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<pre style="margin: 0;">+<span id="LC2592" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">is_pyramid</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2593" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2593
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<pre style="margin: 0;">+<span id="LC2593" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">levels</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">4</span></span>
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2308
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2594
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<pre style="margin: 0;"> <span id="LC2594" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">347</span><span class="p">,</span> <span class="mi" style="color: #099;">641</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">)</span></span>
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2309
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2595
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<pre style="margin: 0;"> <span id="LC2595" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">dtype</span><span class="p">.</span><span class="n" style="color: #333;">name</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'uint8'</span></span>
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2310
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2596
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<pre style="margin: 0;"> <span id="LC2596" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">axes</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'YXS'</span></span>
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2311
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<pre style="margin: 0;">-<span id="LC2311" class="line" lang="python"> <span class="n" style="color: #333;">series</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="mi" style="color: #099;">3</span><span class="p">]</span></span>
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2597
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<pre style="margin: 0;">+<span id="LC2597" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># level 3</span></span>
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2598
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<pre style="margin: 0;">+<span id="LC2598" class="line" lang="python"> <span class="n" style="color: #333;">series</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">levels</span><span class="p">[</span><span class="mi" style="color: #099;">3</span><span class="p">]</span></span>
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2312
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2599
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<pre style="margin: 0;"> <span id="LC2599" class="line" lang="python"> <span class="n" style="color: #333;">page</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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2313
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2600
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<pre style="margin: 0;"> <span id="LC2600" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">is_reduced</span></span>
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2314
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2601
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<pre style="margin: 0;"> <span id="LC2601" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">is_tiled</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3343" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3630" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3343,6 +3630,36 @@ def test_read_zstd():</td>
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3343
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3630
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<pre style="margin: 0;"> <span id="LC3630" class="line" lang="python"> <span class="n" style="color: #333;">assert__str__</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">)</span></span>
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3344
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3631
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<pre style="margin: 0;"> <span id="LC3631" class="line" lang="python"></span>
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3345
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3632
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<pre style="margin: 0;"> <span id="LC3632" class="line" lang="python"></span>
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3633
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<pre style="margin: 0;">+<span id="LC3633" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">mark</span><span class="p">.</span><span class="n" style="color: #333;">skipif</span><span class="p">(</span><span class="n" style="color: #333;">SKIP_PRIVATE</span> <span class="ow" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">SKIP_CODECS</span><span class="p">,</span> <span class="n" style="color: #333;">reason</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">REASON</span><span class="p">)</span></span>
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3634
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<pre style="margin: 0;">+<span id="LC3634" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_read_cfa</span><span class="p">():</span></span>
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3635
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<pre style="margin: 0;">+<span id="LC3635" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test read 14-bit uncompressed and JPEG compressed CFA image."""</span></span>
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3636
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<pre style="margin: 0;">+<span id="LC3636" class="line" lang="python"> <span class="n" style="color: #333;">fname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">private_file</span><span class="p">(</span><span class="s" style="color: #d14;">'DNG/cinemadng/M14-1451_000085_cDNG_uncompressed.dng'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="3637" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3637
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<pre style="margin: 0;">+<span id="LC3637" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="3638" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3638
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<pre style="margin: 0;">+<span id="LC3638" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span></span>
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<td class="diff-line-num new new_line" data-linenumber="3639" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3639
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<pre style="margin: 0;">+<span id="LC3639" class="line" lang="python"> <span class="n" style="color: #333;">page</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="3640" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3640
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<pre style="margin: 0;">+<span id="LC3640" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">compression</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span></span>
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<td class="diff-line-num new new_line" data-linenumber="3641" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3641
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<pre style="margin: 0;">+<span id="LC3641" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">photometric</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">CFA</span></span>
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<td class="diff-line-num new new_line" data-linenumber="3642" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3642
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<pre style="margin: 0;">+<span id="LC3642" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">imagewidth</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">960</span></span>
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<td class="diff-line-num new new_line" data-linenumber="3643" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3643
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<pre style="margin: 0;">+<span id="LC3643" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">imagelength</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">540</span></span>
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<td class="diff-line-num new new_line" data-linenumber="3644" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3644
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<pre style="margin: 0;">+<span id="LC3644" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">bitspersample</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">14</span></span>
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<td class="diff-line-num new new_line" data-linenumber="3645" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3645
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<pre style="margin: 0;">+<span id="LC3645" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">tags</span><span class="p">[</span><span class="s" style="color: #d14;">'CFARepeatPatternDim'</span><span class="p">].</span><span class="n" style="color: #333;">value</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="3646" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3646
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<pre style="margin: 0;">+<span id="LC3646" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">tags</span><span class="p">[</span><span class="s" style="color: #d14;">'CFAPattern'</span><span class="p">].</span><span class="n" style="color: #333;">value</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">b'</span><span class="se" style="color: #d14;">\x00\x01\x01\x02</span><span class="s" style="color: #d14;">'</span></span>
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<td class="diff-line-num new new_line" data-linenumber="3647" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3647
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<pre style="margin: 0;">+<span id="LC3647" class="line" lang="python"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">()</span></span>
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<td class="diff-line-num new new_line" data-linenumber="3648" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3648
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<pre style="margin: 0;">+<span id="LC3648" class="line" lang="python"></span>
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<td class="diff-line-num new new_line" data-linenumber="3649" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3649
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<pre style="margin: 0;">+<span id="LC3649" class="line" lang="python"> <span class="n" style="color: #333;">fname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">private_file</span><span class="p">(</span><span class="s" style="color: #d14;">'DNG/cinemadng/M14-1451_000085_cDNG_compressed.dng'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="3650" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3650
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<pre style="margin: 0;">+<span id="LC3650" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="3651" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3651
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<pre style="margin: 0;">+<span id="LC3651" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="3652" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3652
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<pre style="margin: 0;">+<span id="LC3652" class="line" lang="python"> <span class="n" style="color: #333;">page</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="3653" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3653
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<pre style="margin: 0;">+<span id="LC3653" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">compression</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">JPEG</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="3654" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3654
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<pre style="margin: 0;">+<span id="LC3654" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">photometric</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">CFA</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="3655" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3655
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<pre style="margin: 0;">+<span id="LC3655" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">imagewidth</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">960</span></span>
</pre>
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3656
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<pre style="margin: 0;">+<span id="LC3656" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">imagelength</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">540</span></span>
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3657
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<pre style="margin: 0;">+<span id="LC3657" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">bitspersample</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">14</span></span>
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<td class="diff-line-num new new_line" data-linenumber="3658" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3658
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<pre style="margin: 0;">+<span id="LC3658" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">tags</span><span class="p">[</span><span class="s" style="color: #d14;">'CFARepeatPatternDim'</span><span class="p">].</span><span class="n" style="color: #333;">value</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="3659" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3659
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<pre style="margin: 0;">+<span id="LC3659" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">tags</span><span class="p">[</span><span class="s" style="color: #d14;">'CFAPattern'</span><span class="p">].</span><span class="n" style="color: #333;">value</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">b'</span><span class="se" style="color: #d14;">\x00\x01\x01\x02</span><span class="s" style="color: #d14;">'</span></span>
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<td class="diff-line-num new new_line" data-linenumber="3660" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3660
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<pre style="margin: 0;">+<span id="LC3660" class="line" lang="python"> <span class="n" style="color: #333;">assert_array_equal</span><span class="p">(</span><span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">(),</span> <span class="n" style="color: #333;">data</span><span class="p">)</span></span>
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3661
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<pre style="margin: 0;">+<span id="LC3661" class="line" lang="python"></span>
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3662
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<pre style="margin: 0;">+<span id="LC3662" class="line" lang="python"></span>
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3346
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3663
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<pre style="margin: 0;"> <span id="LC3663" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">mark</span><span class="p">.</span><span class="n" style="color: #333;">skipif</span><span class="p">(</span><span class="n" style="color: #333;">SKIP_PRIVATE</span> <span class="ow" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">SKIP_CODECS</span><span class="p">,</span> <span class="n" style="color: #333;">reason</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">REASON</span><span class="p">)</span></span>
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3347
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3664
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<pre style="margin: 0;"> <span id="LC3664" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_read_lena_be_f16_contig</span><span class="p">():</span></span>
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3348
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3665
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<pre style="margin: 0;"> <span id="LC3665" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test read big endian float16 horizontal differencing."""</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3785" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3785,8 +4102,16 @@ def test_read_subifds_array():</td>
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3785
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4102
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<pre style="margin: 0;"> <span id="LC4102" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test read SubIFDs."""</span></span>
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3786
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<td class="diff-line-num new_line" data-linenumber="4103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4103
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<pre style="margin: 0;"> <span id="LC4103" class="line" lang="python"> <span class="n" style="color: #333;">fname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">public_file</span><span class="p">(</span><span class="s" style="color: #d14;">'Tiff-Library-4J/IFD struct/SubIFDs array E.tif'</span><span class="p">)</span></span>
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3787
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<td class="diff-line-num new_line" data-linenumber="4104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4104
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<pre style="margin: 0;"> <span id="LC4104" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num old old_line" data-linenumber="3788" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
3788
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<td class="diff-line-num new_line old" data-linenumber="4105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC3788" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span></span>
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<td class="diff-line-num old_line" data-linenumber="3789" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3789
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4105
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<pre style="margin: 0;"> <span id="LC4105" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span></span>
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<td class="diff-line-num new old_line" data-linenumber="3790" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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4106
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<pre style="margin: 0;">+<span id="LC4106" class="line" lang="python"></span>
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<td class="diff-line-num new new_line" data-linenumber="4107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4107
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<pre style="margin: 0;">+<span id="LC4107" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># make sure no pyramid was detected</span></span>
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<td class="diff-line-num new new_line" data-linenumber="4108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4108
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<pre style="margin: 0;">+<span id="LC4108" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">5</span></span>
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4109
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<pre style="margin: 0;">+<span id="LC4109" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">].</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">1500</span><span class="p">,</span> <span class="mi" style="color: #099;">2000</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">)</span></span>
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4110
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<pre style="margin: 0;">+<span id="LC4110" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">].</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">1200</span><span class="p">,</span> <span class="mi" style="color: #099;">1600</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">)</span></span>
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4111
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<pre style="margin: 0;">+<span id="LC4111" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">].</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">900</span><span class="p">,</span> <span class="mi" style="color: #099;">1200</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">)</span></span>
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4112
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<pre style="margin: 0;">+<span id="LC4112" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="mi" style="color: #099;">3</span><span class="p">].</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">600</span><span class="p">,</span> <span class="mi" style="color: #099;">800</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="4113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4113
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<pre style="margin: 0;">+<span id="LC4113" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="mi" style="color: #099;">4</span><span class="p">].</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">300</span><span class="p">,</span> <span class="mi" style="color: #099;">400</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">)</span></span>
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4114
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<pre style="margin: 0;">+<span id="LC4114" class="line" lang="python"></span>
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3790
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4115
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<pre style="margin: 0;"> <span id="LC4115" class="line" lang="python"> <span class="n" style="color: #333;">page</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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3791
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4116
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<pre style="margin: 0;"> <span id="LC4116" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">photometric</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">RGB</span></span>
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3792
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4117
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<pre style="margin: 0;"> <span id="LC4117" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">imagewidth</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">2000</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3884" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3884,6 +4209,30 @@ def test_read_subifd8():</td>
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3884
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4209
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<pre style="margin: 0;"> <span id="LC4209" class="line" lang="python"> <span class="n" style="color: #333;">assert__str__</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">)</span></span>
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3885
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4210
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<pre style="margin: 0;"> <span id="LC4210" class="line" lang="python"></span>
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3886
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4211
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<pre style="margin: 0;"> <span id="LC4211" class="line" lang="python"></span>
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4212
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<pre style="margin: 0;">+<span id="LC4212" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_read_tiles</span><span class="p">():</span></span>
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4213
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<pre style="margin: 0;">+<span id="LC4213" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test iteration over tiles, manually and via page.segments."""</span></span>
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4214
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<pre style="margin: 0;">+<span id="LC4214" class="line" lang="python"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="n" style="color: #333;">arange</span><span class="p">(</span><span class="mi" style="color: #099;">600</span><span class="o" style="font-weight: 600;">*</span><span class="mi" style="color: #099;">500</span><span class="o" style="font-weight: 600;">*</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'uint8'</span><span class="p">).</span><span class="n" style="color: #333;">reshape</span><span class="p">((</span><span class="mi" style="color: #099;">600</span><span class="p">,</span> <span class="mi" style="color: #099;">500</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">))</span></span>
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4215
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<pre style="margin: 0;">+<span id="LC4215" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TempFileName</span><span class="p">(</span><span class="s" style="color: #d14;">'read_tiles'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">fname</span><span class="p">:</span></span>
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4216
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<pre style="margin: 0;">+<span id="LC4216" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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4217
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<pre style="margin: 0;">+<span id="LC4217" class="line" lang="python"> <span class="n" style="color: #333;">options</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">dict</span><span class="p">(</span><span class="n" style="color: #333;">tile</span><span class="o" style="font-weight: 600;">=</span><span class="p">(</span><span class="mi" style="color: #099;">256</span><span class="p">,</span> <span class="mi" style="color: #099;">256</span><span class="p">),</span> <span class="n" style="color: #333;">compress</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'jpeg'</span><span class="p">,</span> <span class="n" style="color: #333;">metadata</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">)</span></span>
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4218
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<pre style="margin: 0;">+<span id="LC4218" class="line" lang="python"> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="o" style="font-weight: 600;">**</span><span class="n" style="color: #333;">options</span><span class="p">)</span></span>
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4219
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<pre style="margin: 0;">+<span id="LC4219" class="line" lang="python"> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">[::</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="p">::</span><span class="mi" style="color: #099;">2</span><span class="p">],</span> <span class="n" style="color: #333;">subfiletype</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="o" style="font-weight: 600;">**</span><span class="n" style="color: #333;">options</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="4220" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4220
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<pre style="margin: 0;">+<span id="LC4220" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="4221" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4221
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<pre style="margin: 0;">+<span id="LC4221" class="line" lang="python"> <span class="n" style="color: #333;">fh</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">filehandle</span></span>
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<td class="diff-line-num new new_line" data-linenumber="4222" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4222
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<pre style="margin: 0;">+<span id="LC4222" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">page</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="4223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4223
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<pre style="margin: 0;">+<span id="LC4223" class="line" lang="python"> <span class="n" style="color: #333;">segments</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">segments</span><span class="p">()</span></span>
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<td class="diff-line-num new new_line" data-linenumber="4224" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4224
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<pre style="margin: 0;">+<span id="LC4224" class="line" lang="python"> <span class="n" style="color: #333;">jpegtables</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">tags</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'JPEGTables'</span><span class="p">,</span> <span class="bp" style="color: #999;">None</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="4225" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4225
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<pre style="margin: 0;">+<span id="LC4225" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">jpegtables</span> <span class="ow" style="font-weight: 600;">is</span> <span class="ow" style="font-weight: 600;">not</span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="4226" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4226
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<pre style="margin: 0;">+<span id="LC4226" class="line" lang="python"> <span class="n" style="color: #333;">jpegtables</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">jpegtables</span><span class="p">.</span><span class="n" style="color: #333;">value</span></span>
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<td class="diff-line-num new new_line" data-linenumber="4227" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4227
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<pre style="margin: 0;">+<span id="LC4227" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">index</span><span class="p">,</span> <span class="p">(</span><span class="n" style="color: #333;">offset</span><span class="p">,</span> <span class="n" style="color: #333;">bytecount</span><span class="p">)</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">enumerate</span><span class="p">(</span></span>
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4228
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<pre style="margin: 0;">+<span id="LC4228" class="line" lang="python"> <span class="nb" style="color: #0086b3;">zip</span><span class="p">(</span><span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">dataoffsets</span><span class="p">,</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">databytecounts</span><span class="p">)</span></span>
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4229
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<pre style="margin: 0;">+<span id="LC4229" class="line" lang="python"> <span class="p">):</span></span>
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4230
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<pre style="margin: 0;">+<span id="LC4230" class="line" lang="python"> <span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="n" style="color: #333;">seek</span><span class="p">(</span><span class="n" style="color: #333;">offset</span><span class="p">)</span></span>
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4231
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<pre style="margin: 0;">+<span id="LC4231" class="line" lang="python"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="n" style="color: #333;">read</span><span class="p">(</span><span class="n" style="color: #333;">bytecount</span><span class="p">)</span></span>
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4232
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<pre style="margin: 0;">+<span id="LC4232" class="line" lang="python"> <span class="n" style="color: #333;">tile</span><span class="p">,</span> <span class="n" style="color: #333;">indices</span><span class="p">,</span> <span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">decode</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">index</span><span class="p">,</span> <span class="n" style="color: #333;">jpegtables</span><span class="p">)</span></span>
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4233
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<pre style="margin: 0;">+<span id="LC4233" class="line" lang="python"> <span class="n" style="color: #333;">assert_array_equal</span><span class="p">(</span><span class="n" style="color: #333;">tile</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">next</span><span class="p">(</span><span class="n" style="color: #333;">segments</span><span class="p">)[</span><span class="mi" style="color: #099;">0</span><span class="p">])</span></span>
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4234
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<pre style="margin: 0;">+<span id="LC4234" class="line" lang="python"></span>
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4235
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<pre style="margin: 0;">+<span id="LC4235" class="line" lang="python"></span>
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3887
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4236
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<pre style="margin: 0;"> <span id="LC4236" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">mark</span><span class="p">.</span><span class="n" style="color: #333;">skipif</span><span class="p">(</span><span class="n" style="color: #333;">SKIP_PRIVATE</span> <span class="ow" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">SKIP_32BIT</span><span class="p">,</span> <span class="n" style="color: #333;">reason</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">REASON</span><span class="p">)</span></span>
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3888
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4237
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<pre style="margin: 0;"> <span id="LC4237" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_read_lsm_mosaic</span><span class="p">():</span></span>
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3889
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4238
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<pre style="margin: 0;"> <span id="LC4238" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test read LSM: PTZCYX (Mosaic mode), two areas, 32 samples, >4 GB."""</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4567,13 +4916,13 @@ def test_read_stk_112508h100():</td>
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4567
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4916
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<pre style="margin: 0;"> <span id="LC4916" class="line" lang="python"></span>
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4568
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4917
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<pre style="margin: 0;"> <span id="LC4917" class="line" lang="python"></span>
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4569
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4918
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<pre style="margin: 0;"> <span id="LC4918" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">mark</span><span class="p">.</span><span class="n" style="color: #333;">skipif</span><span class="p">(</span><span class="n" style="color: #333;">SKIP_PRIVATE</span> <span class="ow" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">SKIP_CODECS</span><span class="p">,</span> <span class="n" style="color: #333;">reason</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">REASON</span><span class="p">)</span></span>
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4570
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<pre style="margin: 0;">-<span id="LC4570" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_read_ndpi_cmu<span class="idiff left right">_1_ndpi</span></span><span class="p">():</span></span>
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4919
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<pre style="margin: 0;">+<span id="LC4919" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_read_ndpi_cmu<span class="idiff left right">1</span></span><span class="p">():</span></span>
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4571
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4920
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<pre style="margin: 0;"> <span id="LC4920" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test read Hamamatsu NDPI slide, JPEG."""</span></span>
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4572
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<td class="diff-line-num new_line" data-linenumber="4921" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4921
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<pre style="margin: 0;"> <span id="LC4921" class="line" lang="python"> <span class="n" style="color: #333;">fname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">private_file</span><span class="p">(</span><span class="s" style="color: #d14;">'HamamatsuNDPI/CMU-1.ndpi'</span><span class="p">)</span></span>
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4573
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<td class="diff-line-num new_line" data-linenumber="4922" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4922
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<pre style="margin: 0;"> <span id="LC4922" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num old_line" data-linenumber="4574" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4574
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<td class="diff-line-num new_line" data-linenumber="4923" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4923
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<pre style="margin: 0;"> <span id="LC4923" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">is_ndpi</span></span>
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4575
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<td class="diff-line-num new_line" data-linenumber="4924" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4924
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<pre style="margin: 0;"> <span id="LC4924" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">5</span></span>
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4576
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<td class="diff-line-num new_line old" data-linenumber="4925" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC4576" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;"><span class="idiff left right">5</span></span></span>
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4925
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<pre style="margin: 0;">+<span id="LC4925" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;"><span class="idiff left right">2</span></span></span>
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4577
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4926
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<pre style="margin: 0;"> <span id="LC4926" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">page</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">:</span></span>
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4578
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4927
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<pre style="margin: 0;"> <span id="LC4927" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">ndpi_tags</span><span class="p">[</span><span class="s" style="color: #d14;">'Model'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'NanoZoomer'</span></span>
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4579
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4928
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<pre style="margin: 0;"> <span id="LC4928" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># first page</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="4596" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4945" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4596,14 +4945,14 @@ def test_read_ndpi_cmu_1_ndpi():</td>
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4596
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4945
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<pre style="margin: 0;"> <span id="LC4945" class="line" lang="python"></span>
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4597
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4946
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<pre style="margin: 0;"> <span id="LC4946" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">mark</span><span class="p">.</span><span class="n" style="color: #333;">skipif</span><span class="p">(</span></span>
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4598
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<td class="diff-line-num new_line" data-linenumber="4947" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4947
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<pre style="margin: 0;"> <span id="LC4947" class="line" lang="python"> <span class="n" style="color: #333;">SKIP_PRIVATE</span> <span class="ow" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">SKIP_CODECS</span> <span class="ow" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">SKIP_32BIT</span> <span class="ow" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">SKIP_EXTENDED</span><span class="p">,</span> <span class="n" style="color: #333;">reason</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">REASON</span><span class="p">)</span></span>
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4599
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<pre style="margin: 0;">-<span id="LC4599" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_read_ndpi_cmu<span class="idiff left right">_</span>2</span><span class="p">():</span></span>
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<td class="diff-line-num new new_line" data-linenumber="4948" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4948
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<pre style="margin: 0;">+<span id="LC4948" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_read_ndpi_cmu2</span><span class="p">():</span></span>
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4600
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4949
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<pre style="margin: 0;"> <span id="LC4949" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test read Hamamatsu NDPI slide, JPEG."""</span></span>
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<td class="diff-line-num old_line" data-linenumber="4601" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4601
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<td class="diff-line-num new_line" data-linenumber="4950" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4950
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<pre style="margin: 0;"> <span id="LC4950" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># JPEG stream too large to be opened with unpatched libjpeg</span></span>
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4602
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<td class="diff-line-num new_line" data-linenumber="4951" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4951
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<pre style="margin: 0;"> <span id="LC4951" class="line" lang="python"> <span class="n" style="color: #333;">fname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">private_file</span><span class="p">(</span><span class="s" style="color: #d14;">'HamamatsuNDPI/CMU-2.ndpi'</span><span class="p">)</span></span>
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<td class="diff-line-num old_line" data-linenumber="4603" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4603
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<td class="diff-line-num new_line" data-linenumber="4952" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4952
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<pre style="margin: 0;"> <span id="LC4952" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num old_line" data-linenumber="4604" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4604
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<td class="diff-line-num new_line" data-linenumber="4953" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4953
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<pre style="margin: 0;"> <span id="LC4953" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">is_ndpi</span></span>
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<td class="diff-line-num old_line" data-linenumber="4605" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4605
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<td class="diff-line-num new_line" data-linenumber="4954" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4954
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<pre style="margin: 0;"> <span id="LC4954" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">6</span></span>
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<td class="diff-line-num old old_line" data-linenumber="4606" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
4606
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<td class="diff-line-num new_line old" data-linenumber="4955" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC4606" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;"><span class="idiff left right">6</span></span></span>
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<td class="diff-line-num new old_line" data-linenumber="4607" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="4955" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4955
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<pre style="margin: 0;">+<span id="LC4955" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;"><span class="idiff left right">2</span></span></span>
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4607
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<td class="diff-line-num new_line" data-linenumber="4956" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4956
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<pre style="margin: 0;"> <span id="LC4956" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">page</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">:</span></span>
</pre>
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4608
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<td class="diff-line-num new_line" data-linenumber="4957" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4957
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<pre style="margin: 0;"> <span id="LC4957" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">ndpi_tags</span><span class="p">[</span><span class="s" style="color: #d14;">'Model'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'NanoZoomer'</span></span>
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<td class="diff-line-num old_line" data-linenumber="4609" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4609
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<td class="diff-line-num new_line" data-linenumber="4958" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4958
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<pre style="margin: 0;"> <span id="LC4958" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># first page</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="4618" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4967" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4618,7 +4967,7 @@ def test_read_ndpi_cmu_2():</td>
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4618
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<td class="diff-line-num new_line" data-linenumber="4967" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4967
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<pre style="margin: 0;"> <span id="LC4967" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">33792</span><span class="p">,</span> <span class="mi" style="color: #099;">79872</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">)</span></span>
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<td class="diff-line-num old_line" data-linenumber="4619" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4619
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<td class="diff-line-num new_line" data-linenumber="4968" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4968
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<pre style="margin: 0;"> <span id="LC4968" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">dtype</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'uint8'</span></span>
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<td class="diff-line-num old_line" data-linenumber="4620" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4620
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<td class="diff-line-num new_line" data-linenumber="4969" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4969
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<pre style="margin: 0;"> <span id="LC4969" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># page 5</span></span>
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<td class="diff-line-num old old_line" data-linenumber="4621" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
4621
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<td class="diff-line-num new_line old" data-linenumber="4970" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC4621" class="line" lang="python"> <span class="n" style="color: #333;">page</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">[</span><span class="o" style="font-weight: 600;"><span class="idiff left">-</span></span><span class="mi" style="color: #099;"><span class="idiff right">1</span></span><span class="p">]</span></span>
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<td class="diff-line-num new old_line" data-linenumber="4622" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="4970" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4970
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<pre style="margin: 0;">+<span id="LC4970" class="line" lang="python"> <span class="n" style="color: #333;">page</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">[</span><span class="mi" style="color: #099;"><span class="idiff left right">5</span></span><span class="p">]</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="4622" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4622
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<td class="diff-line-num new_line" data-linenumber="4971" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4971
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<pre style="margin: 0;"> <span id="LC4971" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">is_ndpi</span></span>
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<td class="diff-line-num old_line" data-linenumber="4623" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4623
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<td class="diff-line-num new_line" data-linenumber="4972" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4972
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<pre style="margin: 0;"> <span id="LC4972" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">photometric</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">YCBCR</span></span>
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<td class="diff-line-num old_line" data-linenumber="4624" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4624
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<td class="diff-line-num new_line" data-linenumber="4973" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4973
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<pre style="margin: 0;"> <span id="LC4973" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">compression</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">JPEG</span></span>
</pre>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4629,14 +4978,61 @@ def test_read_ndpi_cmu_2():</td>
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4978
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<pre style="margin: 0;"> <span id="LC4978" class="line" lang="python"></span>
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4630
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4979
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<pre style="margin: 0;"> <span id="LC4979" class="line" lang="python"></span>
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4631
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4980
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<pre style="margin: 0;"> <span id="LC4980" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">mark</span><span class="p">.</span><span class="n" style="color: #333;">skipif</span><span class="p">(</span><span class="n" style="color: #333;">SKIP_PRIVATE</span> <span class="ow" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">SKIP_CODECS</span><span class="p">,</span> <span class="n" style="color: #333;">reason</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">REASON</span><span class="p">)</span></span>
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4632
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<pre style="margin: 0;">-<span id="LC4632" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_read_svs_cmu_1</span><span class="p">():</span></span>
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4981
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<pre style="margin: 0;">+<span id="LC4981" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_read_ndpi_4gb</span><span class="p">():</span></span>
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4982
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<pre style="margin: 0;">+<span id="LC4982" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test read > 4GB Hamamatsu NDPI slide, JPEG 103680x188160."""</span></span>
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4983
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<pre style="margin: 0;">+<span id="LC4983" class="line" lang="python"> <span class="n" style="color: #333;">fname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">private_file</span><span class="p">(</span><span class="s" style="color: #d14;">'HamamatsuNDPI/103680x188160.ndpi'</span><span class="p">)</span></span>
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4984
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<pre style="margin: 0;">+<span id="LC4984" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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4985
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<pre style="margin: 0;">+<span id="LC4985" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">is_ndpi</span></span>
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4986
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<pre style="margin: 0;">+<span id="LC4986" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">8</span></span>
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4987
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<pre style="margin: 0;">+<span id="LC4987" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">3</span></span>
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4988
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<pre style="margin: 0;">+<span id="LC4988" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">page</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">:</span></span>
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4989
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<pre style="margin: 0;">+<span id="LC4989" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">ndpi_tags</span><span class="p">[</span><span class="s" style="color: #d14;">'Model'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'C13220'</span></span>
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4990
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<pre style="margin: 0;">+<span id="LC4990" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># first page</span></span>
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4991
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<pre style="margin: 0;">+<span id="LC4991" class="line" lang="python"> <span class="n" style="color: #333;">page</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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4992
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<pre style="margin: 0;">+<span id="LC4992" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">is_ndpi</span></span>
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4993
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<pre style="margin: 0;">+<span id="LC4993" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">databytecounts</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">4461521316</span><span class="p">,)</span></span>
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4994
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<pre style="margin: 0;">+<span id="LC4994" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">photometric</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">YCBCR</span></span>
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4995
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<pre style="margin: 0;">+<span id="LC4995" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">compression</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">JPEG</span></span>
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4996
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<pre style="margin: 0;">+<span id="LC4996" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">103680</span><span class="p">,</span> <span class="mi" style="color: #099;">188160</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="4997" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4997
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<pre style="margin: 0;">+<span id="LC4997" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">ndpi_tags</span><span class="p">[</span><span class="s" style="color: #d14;">'Magnification'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="mf" style="color: #099;">40.0</span></span>
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<td class="diff-line-num new new_line" data-linenumber="4998" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4998
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<pre style="margin: 0;">+<span id="LC4998" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">ndpi_tags</span><span class="p">[</span><span class="s" style="color: #d14;">'McuStarts'</span><span class="p">][</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">4461516507</span> <span class="c1" style="color: #998; font-style: italic;"># corrected</span></span>
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<td class="diff-line-num new new_line" data-linenumber="4999" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4999
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<pre style="margin: 0;">+<span id="LC4999" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># page 7</span></span>
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<td class="diff-line-num new new_line" data-linenumber="5000" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5000
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<pre style="margin: 0;">+<span id="LC5000" class="line" lang="python"> <span class="n" style="color: #333;">page</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">[</span><span class="mi" style="color: #099;">7</span><span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="5001" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5001
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<pre style="margin: 0;">+<span id="LC5001" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">is_ndpi</span></span>
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<td class="diff-line-num new new_line" data-linenumber="5002" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5002
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<pre style="margin: 0;">+<span id="LC5002" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">photometric</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">MINISBLACK</span></span>
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<td class="diff-line-num new new_line" data-linenumber="5003" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5003
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<pre style="margin: 0;">+<span id="LC5003" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">compression</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">NONE</span></span>
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<td class="diff-line-num new new_line" data-linenumber="5004" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5004
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<pre style="margin: 0;">+<span id="LC5004" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">200</span><span class="p">,</span> <span class="mi" style="color: #099;">600</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="5005" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5005
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<pre style="margin: 0;">+<span id="LC5005" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">ndpi_tags</span><span class="p">[</span><span class="s" style="color: #d14;">'Magnification'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="o" style="font-weight: 600;">-</span><span class="mf" style="color: #099;">2.0</span></span>
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5006
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<pre style="margin: 0;">+<span id="LC5006" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># assert page.asarray()[226, 629, 0] == 167</span></span>
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5007
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<pre style="margin: 0;">+<span id="LC5007" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># first series</span></span>
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5008
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<pre style="margin: 0;">+<span id="LC5008" class="line" lang="python"> <span class="n" style="color: #333;">series</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="5009" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5009
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<pre style="margin: 0;">+<span id="LC5009" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">kind</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'NDPI'</span></span>
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<td class="diff-line-num new new_line" data-linenumber="5010" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5010
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<pre style="margin: 0;">+<span id="LC5010" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">name</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'S10533009'</span></span>
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<td class="diff-line-num new new_line" data-linenumber="5011" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5011
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<pre style="margin: 0;">+<span id="LC5011" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">103680</span><span class="p">,</span> <span class="mi" style="color: #099;">188160</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="5012" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5012
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<pre style="margin: 0;">+<span id="LC5012" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">is_pyramid</span></span>
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<td class="diff-line-num new new_line" data-linenumber="5013" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5013
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<pre style="margin: 0;">+<span id="LC5013" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">levels</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">6</span></span>
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<td class="diff-line-num new new_line" data-linenumber="5014" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5014
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<pre style="margin: 0;">+<span id="LC5014" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span></span>
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<td class="diff-line-num new new_line" data-linenumber="5015" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5015
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<pre style="margin: 0;">+<span id="LC5015" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># pyramid levels</span></span>
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5016
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<pre style="margin: 0;">+<span id="LC5016" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">levels</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">].</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">51840</span><span class="p">,</span> <span class="mi" style="color: #099;">94080</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">)</span></span>
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5017
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<pre style="margin: 0;">+<span id="LC5017" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">levels</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">].</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">25920</span><span class="p">,</span> <span class="mi" style="color: #099;">47040</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">)</span></span>
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5018
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<pre style="margin: 0;">+<span id="LC5018" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">levels</span><span class="p">[</span><span class="mi" style="color: #099;">3</span><span class="p">].</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">12960</span><span class="p">,</span> <span class="mi" style="color: #099;">23520</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="5019" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5019
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<pre style="margin: 0;">+<span id="LC5019" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">levels</span><span class="p">[</span><span class="mi" style="color: #099;">4</span><span class="p">].</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">6480</span><span class="p">,</span> <span class="mi" style="color: #099;">11760</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="5020" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5020
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<pre style="margin: 0;">+<span id="LC5020" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">levels</span><span class="p">[</span><span class="mi" style="color: #099;">5</span><span class="p">].</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">3240</span><span class="p">,</span> <span class="mi" style="color: #099;">5880</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="5021" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5021
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<pre style="margin: 0;">+<span id="LC5021" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">tuple</span><span class="p">(</span><span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">levels</span><span class="p">[</span><span class="mi" style="color: #099;">5</span><span class="p">].</span><span class="n" style="color: #333;">asarray</span><span class="p">()[</span><span class="mi" style="color: #099;">1000</span><span class="p">,</span> <span class="mi" style="color: #099;">1000</span><span class="p">])</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">222</span><span class="p">,</span> <span class="mi" style="color: #099;">165</span><span class="p">,</span> <span class="mi" style="color: #099;">200</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="5022" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5022
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<pre style="margin: 0;">+<span id="LC5022" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># cannot decode base levels since JPEG compressed size > 2 GB</span></span>
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5023
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<pre style="margin: 0;">+<span id="LC5023" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># series.levels[0].asarray()</span></span>
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5024
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<pre style="margin: 0;">+<span id="LC5024" class="line" lang="python"> <span class="n" style="color: #333;">assert__str__</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">)</span></span>
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5025
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<pre style="margin: 0;">+<span id="LC5025" class="line" lang="python"></span>
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5026
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<pre style="margin: 0;">+<span id="LC5026" class="line" lang="python"></span>
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<td class="diff-line-num new new_line" data-linenumber="5027" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5027
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<pre style="margin: 0;">+<span id="LC5027" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">mark</span><span class="p">.</span><span class="n" style="color: #333;">skipif</span><span class="p">(</span><span class="n" style="color: #333;">SKIP_PRIVATE</span> <span class="ow" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">SKIP_CODECS</span><span class="p">,</span> <span class="n" style="color: #333;">reason</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">REASON</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="5028" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5028
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<pre style="margin: 0;">+<span id="LC5028" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_read_svs_cmu1</span><span class="p">():</span></span>
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4633
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<td class="diff-line-num new_line" data-linenumber="5029" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5029
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<pre style="margin: 0;"> <span id="LC5029" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test read Aperio SVS slide, JPEG and LZW."""</span></span>
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4634
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5030
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<pre style="margin: 0;"> <span id="LC5030" class="line" lang="python"> <span class="n" style="color: #333;">fname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">private_file</span><span class="p">(</span><span class="s" style="color: #d14;">'AperioSVS/CMU-1.svs'</span><span class="p">)</span></span>
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4635
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<td class="diff-line-num new_line" data-linenumber="5031" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5031
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<pre style="margin: 0;"> <span id="LC5031" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
</pre>
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4636
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5032
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<pre style="margin: 0;"> <span id="LC5032" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">is_svs</span></span>
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4637
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5033
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<pre style="margin: 0;"> <span id="LC5033" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">is_scanimage</span></span>
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4638
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<td class="diff-line-num new_line" data-linenumber="5034" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5034
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<pre style="margin: 0;"> <span id="LC5034" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">6</span></span>
</pre>
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4639
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<pre style="margin: 0;">-<span id="LC4639" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;"><span class="idiff left right">6</span></span></span>
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<td class="diff-line-num new new_line" data-linenumber="5035" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5035
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC5035" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;"><span class="idiff left right">4</span></span></span>
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4640
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<td class="diff-line-num new_line" data-linenumber="5036" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5036
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<pre style="margin: 0;"> <span id="LC5036" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">page</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">:</span></span>
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4641
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<td class="diff-line-num new_line" data-linenumber="5037" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5037
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<pre style="margin: 0;"> <span id="LC5037" class="line" lang="python"> <span class="n" style="color: #333;">svs_description_metadata</span><span class="p">(</span><span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">description</span><span class="p">)</span></span>
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4642
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<td class="diff-line-num new_line" data-linenumber="5038" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5038
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<pre style="margin: 0;"> <span id="LC5038" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># first page</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="4670" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="5066" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4670,7 +5066,7 @@ def test_read_svs_jp2k_33003_1():</td>
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4670
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<td class="diff-line-num new_line" data-linenumber="5066" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5066
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<pre style="margin: 0;"> <span id="LC5066" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">is_svs</span></span>
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<td class="diff-line-num old_line" data-linenumber="4671" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4671
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<td class="diff-line-num new_line" data-linenumber="5067" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5067
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<pre style="margin: 0;"> <span id="LC5067" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">is_scanimage</span></span>
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<td class="diff-line-num old_line" data-linenumber="4672" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4672
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<td class="diff-line-num new_line" data-linenumber="5068" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5068
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<pre style="margin: 0;"> <span id="LC5068" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">6</span></span>
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<td class="diff-line-num old old_line" data-linenumber="4673" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
4673
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<td class="diff-line-num new_line old" data-linenumber="5069" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC4673" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;"><span class="idiff left right">6</span></span></span>
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<td class="diff-line-num new old_line" data-linenumber="4674" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="5069" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5069
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<pre style="margin: 0;">+<span id="LC5069" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;"><span class="idiff left right">4</span></span></span>
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4674
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<td class="diff-line-num new_line" data-linenumber="5070" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5070
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<pre style="margin: 0;"> <span id="LC5070" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">page</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">:</span></span>
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<td class="diff-line-num old_line" data-linenumber="4675" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4675
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<td class="diff-line-num new_line" data-linenumber="5071" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5071
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<pre style="margin: 0;"> <span id="LC5071" class="line" lang="python"> <span class="n" style="color: #333;">svs_description_metadata</span><span class="p">(</span><span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">description</span><span class="p">)</span></span>
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4676
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5072
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<pre style="margin: 0;"> <span id="LC5072" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># first page</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="5420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="5816" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5420,7 +5816,7 @@ def test_read_ome_rgb():</td>
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5420
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5816
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<pre style="margin: 0;"> <span id="LC5816" class="line" lang="python"> <span class="n" style="color: #333;">series</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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<td class="diff-line-num old_line" data-linenumber="5421" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5421
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<td class="diff-line-num new_line" data-linenumber="5817" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5817
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<pre style="margin: 0;"> <span id="LC5817" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">720</span><span class="p">,</span> <span class="mi" style="color: #099;">1280</span><span class="p">)</span></span>
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<td class="diff-line-num old_line" data-linenumber="5422" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5422
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<td class="diff-line-num new_line" data-linenumber="5818" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5818
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<pre style="margin: 0;"> <span id="LC5818" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">dtype</span><span class="p">.</span><span class="n" style="color: #333;">name</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'uint8'</span></span>
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<td class="diff-line-num old old_line" data-linenumber="5423" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
5423
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<td class="diff-line-num new_line old" data-linenumber="5819" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC5423" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">axes</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'<span class="idiff left right">C</span>YX'</span></span>
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<td class="diff-line-num new old_line" data-linenumber="5424" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="5819" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5819
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<pre style="margin: 0;">+<span id="LC5819" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">axes</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'<span class="idiff left right">S</span>YX'</span></span>
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<td class="diff-line-num old_line" data-linenumber="5424" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5424
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<td class="diff-line-num new_line" data-linenumber="5820" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5820
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<pre style="margin: 0;"> <span id="LC5820" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">offset</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">17524</span></span>
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5425
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5821
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<pre style="margin: 0;"> <span id="LC5821" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># assert data</span></span>
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5426
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5822
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<pre style="margin: 0;"> <span id="LC5822" class="line" lang="python"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">()</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="5848" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5452,7 +5848,7 @@ def test_read_ome_samplesperpixel():</td>
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5452
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5848
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<pre style="margin: 0;"> <span id="LC5848" class="line" lang="python"> <span class="n" style="color: #333;">series</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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5453
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5849
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<pre style="margin: 0;"> <span id="LC5849" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">6</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">1024</span><span class="p">,</span> <span class="mi" style="color: #099;">1024</span><span class="p">)</span></span>
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5454
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5850
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<pre style="margin: 0;"> <span id="LC5850" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">dtype</span><span class="p">.</span><span class="n" style="color: #333;">name</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'uint8'</span></span>
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5455
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<td class="diff-line-num new_line old" data-linenumber="5851" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC5455" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">axes</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'Z<span class="idiff left right">C</span>YX'</span></span>
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5851
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<pre style="margin: 0;">+<span id="LC5851" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">axes</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'Z<span class="idiff left right">S</span>YX'</span></span>
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5456
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5852
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<pre style="margin: 0;"> <span id="LC5852" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># assert data</span></span>
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5457
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5853
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<pre style="margin: 0;"> <span id="LC5853" class="line" lang="python"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">()</span></span>
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5458
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5854
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<pre style="margin: 0;"> <span id="LC5854" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">6</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">1024</span><span class="p">,</span> <span class="mi" style="color: #099;">1024</span><span class="p">)</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="7009" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6613,7 +7009,7 @@ def test_read_geotiff_spaf27_markedcorrect():</td>
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6613
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7009
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<pre style="margin: 0;"> <span id="LC7009" class="line" lang="python"></span>
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6614
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7010
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<pre style="margin: 0;"> <span id="LC7010" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">mark</span><span class="p">.</span><span class="n" style="color: #333;">skipif</span><span class="p">(</span><span class="n" style="color: #333;">SKIP_PRIVATE</span> <span class="ow" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">SKIP_CODECS</span><span class="p">,</span> <span class="n" style="color: #333;">reason</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">REASON</span><span class="p">)</span></span>
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6615
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7011
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<pre style="margin: 0;"> <span id="LC7011" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_read_qpi</span><span class="p">():</span></span>
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<pre style="margin: 0;">-<span id="LC6616" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test read PerkinElmer-QPI."""</span></span>
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7012
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<pre style="margin: 0;">+<span id="LC7012" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test read PerkinElmer-QPI<span class="idiff left right">, non Pyramid</span>."""</span></span>
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6617
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7013
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<pre style="margin: 0;"> <span id="LC7013" class="line" lang="python"> <span class="n" style="color: #333;">fname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">private_file</span><span class="p">(</span></span>
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6618
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7014
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<pre style="margin: 0;"> <span id="LC7014" class="line" lang="python"> <span class="s" style="color: #d14;">'PerkinElmer-QPI/LuCa-7color_[13860,52919]_1x1component_data.tiff'</span><span class="p">)</span></span>
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6619
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7015
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<pre style="margin: 0;"> <span id="LC7015" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6629,6 +7025,14 @@ def test_read_qpi():</td>
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6629
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7025
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<pre style="margin: 0;"> <span id="LC7025" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">bitspersample</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">32</span></span>
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6630
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<td class="diff-line-num new_line" data-linenumber="7026" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7026
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<pre style="margin: 0;"> <span id="LC7026" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">samplesperpixel</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span></span>
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6631
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<td class="diff-line-num new_line" data-linenumber="7027" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7027
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<pre style="margin: 0;"> <span id="LC7027" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">tags</span><span class="p">[</span><span class="s" style="color: #d14;">'Software'</span><span class="p">].</span><span class="n" style="color: #333;">value</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'PerkinElmer-QPI'</span></span>
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<td class="diff-line-num new new_line" data-linenumber="7028" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7028
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<pre style="margin: 0;">+<span id="LC7028" class="line" lang="python"> <span class="n" style="color: #333;">series</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="7029" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7029
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<pre style="margin: 0;">+<span id="LC7029" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">8</span><span class="p">,</span> <span class="mi" style="color: #099;">1400</span><span class="p">,</span> <span class="mi" style="color: #099;">1868</span><span class="p">)</span></span>
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7030
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<pre style="margin: 0;">+<span id="LC7030" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">dtype</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'float32'</span></span>
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<td class="diff-line-num new new_line" data-linenumber="7031" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7031
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<pre style="margin: 0;">+<span id="LC7031" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">is_pyramid</span></span>
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7032
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<pre style="margin: 0;">+<span id="LC7032" class="line" lang="python"> <span class="n" style="color: #333;">series</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="7033" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7033
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<pre style="margin: 0;">+<span id="LC7033" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">350</span><span class="p">,</span> <span class="mi" style="color: #099;">467</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">)</span></span>
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7034
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<pre style="margin: 0;">+<span id="LC7034" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">dtype</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'uint8'</span></span>
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<td class="diff-line-num new new_line" data-linenumber="7035" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7035
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<pre style="margin: 0;">+<span id="LC7035" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">is_pyramid</span></span>
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6632
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<td class="diff-line-num new_line" data-linenumber="7036" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7036
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<pre style="margin: 0;"> <span id="LC7036" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># assert data</span></span>
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6633
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<td class="diff-line-num new_line" data-linenumber="7037" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7037
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<pre style="margin: 0;"> <span id="LC7037" class="line" lang="python"> <span class="n" style="color: #333;">image</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">()</span></span>
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6634
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7038
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<pre style="margin: 0;"> <span id="LC7038" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">image</span><span class="p">.</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">8</span><span class="p">,</span> <span class="mi" style="color: #099;">1400</span><span class="p">,</span> <span class="mi" style="color: #099;">1868</span><span class="p">)</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="6648" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="7052" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6648,7 +7052,7 @@ def test_read_zif():</td>
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6648
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7052
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<pre style="margin: 0;"> <span id="LC7052" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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6649
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7053
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<pre style="margin: 0;"> <span id="LC7053" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># assert tif.is_zif</span></span>
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6650
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<td class="diff-line-num new_line" data-linenumber="7054" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7054
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<pre style="margin: 0;"> <span id="LC7054" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">5</span></span>
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6651
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<pre style="margin: 0;">-<span id="LC6651" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;"><span class="idiff left right">5</span></span></span>
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7055
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<pre style="margin: 0;">+<span id="LC7055" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;"><span class="idiff left right">1</span></span></span>
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6652
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7056
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<pre style="margin: 0;"> <span id="LC7056" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">page</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">:</span></span>
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6653
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7057
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<pre style="margin: 0;"> <span id="LC7057" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">description</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="s" style="color: #d14;">'Created by Objective '</span></span>
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6654
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7058
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<pre style="margin: 0;"> <span id="LC7058" class="line" lang="python"> <span class="s" style="color: #d14;">'Pathology Services'</span><span class="p">)</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6664,6 +7068,14 @@ def test_read_zif():</td>
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6664
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7068
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<pre style="margin: 0;"> <span id="LC7068" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">compression</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">JPEG</span></span>
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6665
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7069
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<pre style="margin: 0;"> <span id="LC7069" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">195</span><span class="p">,</span> <span class="mi" style="color: #099;">130</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">)</span></span>
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6666
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7070
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<pre style="margin: 0;"> <span id="LC7070" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">tuple</span><span class="p">(</span><span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">()[</span><span class="mi" style="color: #099;">191</span><span class="p">,</span> <span class="mi" style="color: #099;">127</span><span class="p">,</span> <span class="p">:])</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">30</span><span class="p">,</span> <span class="mi" style="color: #099;">49</span><span class="p">,</span> <span class="mi" style="color: #099;">66</span><span class="p">)</span></span>
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7071
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<pre style="margin: 0;">+<span id="LC7071" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># series</span></span>
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7072
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<pre style="margin: 0;">+<span id="LC7072" class="line" lang="python"> <span class="n" style="color: #333;">series</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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7073
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<pre style="margin: 0;">+<span id="LC7073" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">is_pyramid</span></span>
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7074
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<pre style="margin: 0;">+<span id="LC7074" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">levels</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">5</span></span>
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7075
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<pre style="margin: 0;">+<span id="LC7075" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">3120</span><span class="p">,</span> <span class="mi" style="color: #099;">2080</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">)</span></span>
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7076
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<pre style="margin: 0;">+<span id="LC7076" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">tuple</span><span class="p">(</span><span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">()[</span><span class="mi" style="color: #099;">3110</span><span class="p">,</span> <span class="mi" style="color: #099;">2070</span><span class="p">,</span> <span class="p">:])</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">27</span><span class="p">,</span> <span class="mi" style="color: #099;">45</span><span class="p">,</span> <span class="mi" style="color: #099;">59</span><span class="p">)</span></span>
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7077
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<pre style="margin: 0;">+<span id="LC7077" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">levels</span><span class="p">[</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">].</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">195</span><span class="p">,</span> <span class="mi" style="color: #099;">130</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">)</span></span>
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7078
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<pre style="margin: 0;">+<span id="LC7078" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">tuple</span><span class="p">(</span><span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">(</span><span class="n" style="color: #333;">level</span><span class="o" style="font-weight: 600;">=-</span><span class="mi" style="color: #099;">1</span><span class="p">)[</span><span class="mi" style="color: #099;">191</span><span class="p">,</span> <span class="mi" style="color: #099;">127</span><span class="p">,</span> <span class="p">:])</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">30</span><span class="p">,</span> <span class="mi" style="color: #099;">49</span><span class="p">,</span> <span class="mi" style="color: #099;">66</span><span class="p">)</span></span>
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6667
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7079
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<pre style="margin: 0;"> <span id="LC7079" class="line" lang="python"> <span class="n" style="color: #333;">assert__str__</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">)</span></span>
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6668
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7080
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<pre style="margin: 0;"> <span id="LC7080" class="line" lang="python"></span>
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6669
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7081
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<pre style="margin: 0;"> <span id="LC7081" class="line" lang="python"></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="7677" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7265,18 +7677,33 @@ def test_write_is_shaped():</td>
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7265
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7677
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<pre style="margin: 0;"> <span id="LC7677" class="line" lang="python"> <span class="n" style="color: #333;">assert__str__</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">)</span></span>
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7266
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7678
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<pre style="margin: 0;"> <span id="LC7678" class="line" lang="python"></span>
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7267
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7679
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<pre style="margin: 0;"> <span id="LC7679" class="line" lang="python"></span>
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7680
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<pre style="margin: 0;">+<span id="LC7680" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_write_bytes_str</span><span class="p">():</span></span>
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7681
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<pre style="margin: 0;">+<span id="LC7681" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test write bytes in place of 7-bit ascii string."""</span></span>
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7682
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<pre style="margin: 0;">+<span id="LC7682" class="line" lang="python"> <span class="n" style="color: #333;">micron</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'micron </span><span class="se" style="color: #d14;">\xB5</span><span class="s" style="color: #d14;">'</span><span class="p">.</span><span class="n" style="color: #333;">encode</span><span class="p">(</span><span class="s" style="color: #d14;">'latin-1'</span><span class="p">)</span> <span class="c1" style="color: #998; font-style: italic;"># can't be encoded as 7-bit ascii</span></span>
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7683
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<pre style="margin: 0;">+<span id="LC7683" class="line" lang="python"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="n" style="color: #333;">arange</span><span class="p">(</span><span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'uint32'</span><span class="p">).</span><span class="n" style="color: #333;">reshape</span><span class="p">((</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">))</span></span>
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7684
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<pre style="margin: 0;">+<span id="LC7684" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TempFileName</span><span class="p">(</span><span class="s" style="color: #d14;">'write_bytes_str'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">fname</span><span class="p">:</span></span>
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7685
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<pre style="margin: 0;">+<span id="LC7685" class="line" lang="python"> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">,</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">description</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">micron</span><span class="p">,</span> <span class="n" style="color: #333;">software</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">micron</span><span class="p">,</span></span>
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7686
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<pre style="margin: 0;">+<span id="LC7686" class="line" lang="python"> <span class="n" style="color: #333;">extratags</span><span class="o" style="font-weight: 600;">=</span><span class="p">[(</span><span class="mi" style="color: #099;">50001</span><span class="p">,</span> <span class="s" style="color: #d14;">'s'</span><span class="p">,</span> <span class="mi" style="color: #099;">8</span><span class="p">,</span> <span class="n" style="color: #333;">micron</span><span class="p">,</span> <span class="bp" style="color: #999;">True</span><span class="p">)])</span></span>
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7687
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<pre style="margin: 0;">+<span id="LC7687" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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7688
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<pre style="margin: 0;">+<span id="LC7688" class="line" lang="python"> <span class="n" style="color: #333;">page</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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7689
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<pre style="margin: 0;">+<span id="LC7689" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">description</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'micron </span><span class="se" style="color: #d14;">\xB5</span><span class="s" style="color: #d14;">'</span></span>
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7690
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<pre style="margin: 0;">+<span id="LC7690" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">software</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'micron </span><span class="se" style="color: #d14;">\xB5</span><span class="s" style="color: #d14;">'</span></span>
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7691
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<pre style="margin: 0;">+<span id="LC7691" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">tags</span><span class="p">[</span><span class="mi" style="color: #099;">50001</span><span class="p">].</span><span class="n" style="color: #333;">value</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'micron </span><span class="se" style="color: #d14;">\xB5</span><span class="s" style="color: #d14;">'</span></span>
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7692
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<pre style="margin: 0;">+<span id="LC7692" class="line" lang="python"></span>
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7693
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<pre style="margin: 0;">+<span id="LC7693" class="line" lang="python"></span>
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7268
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7694
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<pre style="margin: 0;"> <span id="LC7694" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_write_extratags</span><span class="p">():</span></span>
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7269
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7695
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<pre style="margin: 0;"> <span id="LC7695" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test write extratags."""</span></span>
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7270
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7696
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<pre style="margin: 0;"> <span id="LC7696" class="line" lang="python"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">random_data</span><span class="p">(</span><span class="s" style="color: #d14;">'uint8'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mi" style="color: #099;">219</span><span class="p">,</span> <span class="mi" style="color: #099;">301</span><span class="p">))</span></span>
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7271
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<td class="diff-line-num new_line old" data-linenumber="7697" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC7271" class="line" lang="python"> <span class="n" style="color: #333;">description</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"Created by TestTiffWriter</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">Lorem ipsum dolor..."</span></span>
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7272
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<pre style="margin: 0;">-<span id="LC7272" class="line" lang="python"> <span class="n" style="color: #333;">pagename</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"Page name"</span></span>
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7273
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<pre style="margin: 0;">-<span id="LC7273" class="line" lang="python"> <span class="n" style="color: #333;">extratags</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[(</span><span class="mi" style="color: #099;">270</span><span class="p">,</span> <span class="s" style="color: #d14;">'s'</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">description</span><span class="p">,</span> <span class="bp" style="color: #999;">True</span><span class="p">),</span></span>
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7274
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<td class="diff-line-num new_line old" data-linenumber="7697" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC7274" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">'PageName'</span><span class="p">,</span> <span class="s" style="color: #d14;">'s'</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">pagename</span><span class="p">,</span> <span class="bp" style="color: #999;">False</span><span class="p">),</span></span>
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7275
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<td class="diff-line-num new_line old" data-linenumber="7697" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC7275" class="line" lang="python"> <span class="p">(</span><span class="mi" style="color: #099;">50001</span><span class="p">,</span> <span class="s" style="color: #d14;">'b'</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="s" style="color: #d14;">b'1'</span><span class="p">,</span> <span class="bp" style="color: #999;">True</span><span class="p">),</span></span>
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7276
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<td class="diff-line-num new_line old" data-linenumber="7697" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC7276" class="line" lang="python"> <span class="p">(</span><span class="mi" style="color: #099;">50002</span><span class="p">,</span> <span class="s" style="color: #d14;">'b'</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="s" style="color: #d14;">b'12'</span><span class="p">,</span> <span class="bp" style="color: #999;">True</span><span class="p">),</span></span>
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7277
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<td class="diff-line-num new_line old" data-linenumber="7697" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC7277" class="line" lang="python"> <span class="p">(</span><span class="mi" style="color: #099;">50004</span><span class="p">,</span> <span class="s" style="color: #d14;">'b'</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="s" style="color: #d14;">b'1234'</span><span class="p">,</span> <span class="bp" style="color: #999;">True</span><span class="p">),</span></span>
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7278
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<td class="diff-line-num new_line old" data-linenumber="7697" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC7278" class="line" lang="python"> <span class="p">(</span><span class="mi" style="color: #099;">50008</span><span class="p">,</span> <span class="s" style="color: #d14;">'B'</span><span class="p">,</span> <span class="mi" style="color: #099;">8</span><span class="p">,</span> <span class="s" style="color: #d14;">b'12345678'</span><span class="p">,</span> <span class="bp" style="color: #999;">True</span><span class="p">),</span></span>
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7279
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<pre style="margin: 0;">-<span id="LC7279" class="line" lang="python"> <span class="p">]</span></span>
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7697
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<pre style="margin: 0;">+<span id="LC7697" class="line" lang="python"> <span class="n" style="color: #333;">description</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'Created by TestTiffWriter</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">Lorem ipsum dolor...'</span></span>
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7698
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<pre style="margin: 0;">+<span id="LC7698" class="line" lang="python"> <span class="n" style="color: #333;">pagename</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'Page name'</span></span>
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7699
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<pre style="margin: 0;">+<span id="LC7699" class="line" lang="python"> <span class="n" style="color: #333;">extratags</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span></span>
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7700
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<pre style="margin: 0;">+<span id="LC7700" class="line" lang="python"> <span class="p">(</span><span class="mi" style="color: #099;">270</span><span class="p">,</span> <span class="s" style="color: #d14;">'s'</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">description</span><span class="p">,</span> <span class="bp" style="color: #999;">True</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="7701" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7701
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<pre style="margin: 0;">+<span id="LC7701" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">'PageName'</span><span class="p">,</span> <span class="s" style="color: #d14;">'s'</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">pagename</span><span class="p">,</span> <span class="bp" style="color: #999;">False</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="7702" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7702
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<pre style="margin: 0;">+<span id="LC7702" class="line" lang="python"> <span class="p">(</span><span class="mi" style="color: #099;">50001</span><span class="p">,</span> <span class="s" style="color: #d14;">'b'</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="s" style="color: #d14;">b'1'</span><span class="p">,</span> <span class="bp" style="color: #999;">True</span><span class="p">),</span></span>
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7703
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<pre style="margin: 0;">+<span id="LC7703" class="line" lang="python"> <span class="p">(</span><span class="mi" style="color: #099;">50002</span><span class="p">,</span> <span class="s" style="color: #d14;">'b'</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="s" style="color: #d14;">b'12'</span><span class="p">,</span> <span class="bp" style="color: #999;">True</span><span class="p">),</span></span>
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7704
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<pre style="margin: 0;">+<span id="LC7704" class="line" lang="python"> <span class="p">(</span><span class="mi" style="color: #099;">50004</span><span class="p">,</span> <span class="s" style="color: #d14;">'b'</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="s" style="color: #d14;">b'1234'</span><span class="p">,</span> <span class="bp" style="color: #999;">True</span><span class="p">),</span></span>
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7705
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<pre style="margin: 0;">+<span id="LC7705" class="line" lang="python"> <span class="p">(</span><span class="mi" style="color: #099;">50008</span><span class="p">,</span> <span class="s" style="color: #d14;">'B'</span><span class="p">,</span> <span class="mi" style="color: #099;">8</span><span class="p">,</span> <span class="s" style="color: #d14;">b'12345678'</span><span class="p">,</span> <span class="bp" style="color: #999;">True</span><span class="p">),</span></span>
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7706
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<pre style="margin: 0;">+<span id="LC7706" class="line" lang="python"> <span class="p">]</span></span>
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7280
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7707
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<pre style="margin: 0;"> <span id="LC7707" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TempFileName</span><span class="p">(</span><span class="s" style="color: #d14;">'extratags'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">fname</span><span class="p">:</span></span>
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7281
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7708
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<pre style="margin: 0;"> <span id="LC7708" class="line" lang="python"> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">,</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">extratags</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">extratags</span><span class="p">)</span></span>
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7282
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7709
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<pre style="margin: 0;"> <span id="LC7709" class="line" lang="python"> <span class="n" style="color: #333;">assert_valid</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7490,6 +7917,49 @@ def test_write_resolution_unit():</td>
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7490
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7917
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<pre style="margin: 0;"> <span id="LC7917" class="line" lang="python"> <span class="n" style="color: #333;">assert__str__</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">)</span></span>
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7491
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7918
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<pre style="margin: 0;"> <span id="LC7918" class="line" lang="python"></span>
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7492
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7919
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<pre style="margin: 0;"> <span id="LC7919" class="line" lang="python"></span>
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7920
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<pre style="margin: 0;">+<span id="LC7920" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">mark</span><span class="p">.</span><span class="n" style="color: #333;">skipif</span><span class="p">(</span><span class="n" style="color: #333;">SKIP_CODECS</span><span class="p">,</span> <span class="n" style="color: #333;">reason</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">REASON</span><span class="p">)</span></span>
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7921
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<pre style="margin: 0;">+<span id="LC7921" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">mark</span><span class="p">.</span><span class="n" style="color: #333;">parametrize</span><span class="p">(</span><span class="s" style="color: #d14;">'bps'</span><span class="p">,</span> <span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mi" style="color: #099;">7</span><span class="p">,</span> <span class="mi" style="color: #099;">8</span><span class="p">])</span></span>
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7922
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<pre style="margin: 0;">+<span id="LC7922" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">mark</span><span class="p">.</span><span class="n" style="color: #333;">parametrize</span><span class="p">(</span><span class="s" style="color: #d14;">'dtype'</span><span class="p">,</span> <span class="p">[</span><span class="s" style="color: #d14;">'u1'</span><span class="p">,</span> <span class="s" style="color: #d14;">'u2'</span><span class="p">,</span> <span class="s" style="color: #d14;">'u4'</span><span class="p">])</span></span>
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7923
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<pre style="margin: 0;">+<span id="LC7923" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_write_bitspersample</span><span class="p">(</span><span class="n" style="color: #333;">bps</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="p">):</span></span>
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7924
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<pre style="margin: 0;">+<span id="LC7924" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test write with packints."""</span></span>
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7925
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<pre style="margin: 0;">+<span id="LC7925" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="n" style="color: #333;">dtype</span><span class="p">(</span><span class="n" style="color: #333;">dtype</span><span class="p">)</span></span>
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7926
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<pre style="margin: 0;">+<span id="LC7926" class="line" lang="python"> <span class="n" style="color: #333;">bps</span> <span class="o" style="font-weight: 600;">+=</span> <span class="p">(</span><span class="n" style="color: #333;">dtype</span><span class="p">.</span><span class="n" style="color: #333;">itemsize</span> <span class="o" style="font-weight: 600;">//</span> <span class="mi" style="color: #099;">2</span><span class="p">)</span> <span class="o" style="font-weight: 600;">*</span> <span class="mi" style="color: #099;">8</span></span>
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<td class="diff-line-num new new_line" data-linenumber="7927" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7927
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<pre style="margin: 0;">+<span id="LC7927" class="line" lang="python"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="n" style="color: #333;">arange</span><span class="p">(</span><span class="mi" style="color: #099;">256</span><span class="o" style="font-weight: 600;">*</span><span class="mi" style="color: #099;">256</span><span class="o" style="font-weight: 600;">*</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">dtype</span><span class="p">).</span><span class="n" style="color: #333;">reshape</span><span class="p">((</span><span class="mi" style="color: #099;">256</span><span class="p">,</span> <span class="mi" style="color: #099;">256</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">))</span></span>
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<td class="diff-line-num new new_line" data-linenumber="7928" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7928
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<pre style="margin: 0;">+<span id="LC7928" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TempFileName</span><span class="p">(</span><span class="s" style="color: #d14;">f'write_bitspersample_</span><span class="si" style="color: #d14;">{</span><span class="n" style="color: #333;">dtype</span><span class="p">.</span><span class="n" style="color: #333;">char</span><span class="si" style="color: #d14;">}{</span><span class="n" style="color: #333;">bps</span><span class="si" style="color: #d14;">}</span><span class="s" style="color: #d14;">'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">fname</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="7929" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7929
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<pre style="margin: 0;">+<span id="LC7929" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># TODO: enable all cases once imagecodecs.packints_encode works</span></span>
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7930
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<pre style="margin: 0;">+<span id="LC7930" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">bps</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">dtype</span><span class="p">.</span><span class="n" style="color: #333;">itemsize</span> <span class="o" style="font-weight: 600;">*</span> <span class="mi" style="color: #099;">8</span><span class="p">:</span></span>
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7931
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<pre style="margin: 0;">+<span id="LC7931" class="line" lang="python"> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">,</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">bitspersample</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">bps</span><span class="p">)</span></span>
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7932
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<pre style="margin: 0;">+<span id="LC7932" class="line" lang="python"> <span class="n" style="color: #333;">assert_array_equal</span><span class="p">(</span><span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">),</span> <span class="n" style="color: #333;">data</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="7933" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7933
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<pre style="margin: 0;">+<span id="LC7933" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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7934
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<pre style="margin: 0;">+<span id="LC7934" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">raises</span><span class="p">(</span><span class="nb" style="color: #0086b3;">NotImplementedError</span><span class="p">):</span></span>
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7935
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<pre style="margin: 0;">+<span id="LC7935" class="line" lang="python"> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">,</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">bitspersample</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">bps</span><span class="p">)</span></span>
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7936
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<pre style="margin: 0;">+<span id="LC7936" class="line" lang="python"> <span class="n" style="color: #333;">assert_array_equal</span><span class="p">(</span><span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">),</span> <span class="n" style="color: #333;">data</span><span class="p">)</span></span>
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7937
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<pre style="margin: 0;">+<span id="LC7937" class="line" lang="python"></span>
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7938
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<pre style="margin: 0;">+<span id="LC7938" class="line" lang="python"></span>
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7939
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<pre style="margin: 0;">+<span id="LC7939" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_write_bitspersample_fail</span><span class="p">():</span></span>
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7940
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<pre style="margin: 0;">+<span id="LC7940" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test write with packints fails."""</span></span>
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7941
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<pre style="margin: 0;">+<span id="LC7941" class="line" lang="python"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="n" style="color: #333;">arange</span><span class="p">(</span><span class="mi" style="color: #099;">32</span><span class="o" style="font-weight: 600;">*</span><span class="mi" style="color: #099;">32</span><span class="o" style="font-weight: 600;">*</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'uint32'</span><span class="p">).</span><span class="n" style="color: #333;">reshape</span><span class="p">((</span><span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">))</span></span>
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7942
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<pre style="margin: 0;">+<span id="LC7942" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TempFileName</span><span class="p">(</span><span class="s" style="color: #d14;">'write_bitspersample_fail'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">fname</span><span class="p">:</span></span>
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7943
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<pre style="margin: 0;">+<span id="LC7943" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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7944
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<pre style="margin: 0;">+<span id="LC7944" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># not working with compression</span></span>
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7945
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<pre style="margin: 0;">+<span id="LC7945" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">raises</span><span class="p">(</span><span class="nb" style="color: #0086b3;">ValueError</span><span class="p">):</span></span>
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<td class="diff-line-num new new_line" data-linenumber="7946" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7946
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<pre style="margin: 0;">+<span id="LC7946" class="line" lang="python"> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">astype</span><span class="p">(</span><span class="s" style="color: #d14;">'uint8'</span><span class="p">),</span> <span class="n" style="color: #333;">bitspersample</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="n" style="color: #333;">compress</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">6</span><span class="p">)</span></span>
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7947
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<pre style="margin: 0;">+<span id="LC7947" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># dtype.itemsize != bitspersample</span></span>
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7948
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<pre style="margin: 0;">+<span id="LC7948" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">dtype</span> <span class="ow" style="font-weight: 600;">in</span> <span class="p">(</span><span class="s" style="color: #d14;">'int8'</span><span class="p">,</span> <span class="s" style="color: #d14;">'int16'</span><span class="p">,</span> <span class="s" style="color: #d14;">'float32'</span><span class="p">,</span> <span class="s" style="color: #d14;">'uint64'</span><span class="p">):</span></span>
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7949
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<pre style="margin: 0;">+<span id="LC7949" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">raises</span><span class="p">(</span><span class="nb" style="color: #0086b3;">ValueError</span><span class="p">):</span></span>
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<td class="diff-line-num new new_line" data-linenumber="7950" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7950
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<pre style="margin: 0;">+<span id="LC7950" class="line" lang="python"> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">astype</span><span class="p">(</span><span class="n" style="color: #333;">dtype</span><span class="p">),</span> <span class="n" style="color: #333;">bitspersample</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">4</span><span class="p">)</span></span>
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7951
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<pre style="margin: 0;">+<span id="LC7951" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># bitspersample out of data range</span></span>
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7952
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<pre style="margin: 0;">+<span id="LC7952" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">bps</span> <span class="ow" style="font-weight: 600;">in</span> <span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">9</span><span class="p">,</span> <span class="mi" style="color: #099;">16</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">):</span></span>
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7953
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<pre style="margin: 0;">+<span id="LC7953" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">raises</span><span class="p">(</span><span class="nb" style="color: #0086b3;">ValueError</span><span class="p">):</span></span>
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7954
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<pre style="margin: 0;">+<span id="LC7954" class="line" lang="python"> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">astype</span><span class="p">(</span><span class="s" style="color: #d14;">'uint8'</span><span class="p">),</span> <span class="n" style="color: #333;">bitspersample</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">bps</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="7955" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7955
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<pre style="margin: 0;">+<span id="LC7955" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">bps</span> <span class="ow" style="font-weight: 600;">in</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">8</span><span class="p">,</span> <span class="mi" style="color: #099;">17</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">):</span></span>
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7956
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<pre style="margin: 0;">+<span id="LC7956" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">raises</span><span class="p">(</span><span class="nb" style="color: #0086b3;">ValueError</span><span class="p">):</span></span>
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7957
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<pre style="margin: 0;">+<span id="LC7957" class="line" lang="python"> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">astype</span><span class="p">(</span><span class="s" style="color: #d14;">'uint16'</span><span class="p">),</span> <span class="n" style="color: #333;">bitspersample</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">bps</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="7958" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7958
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<pre style="margin: 0;">+<span id="LC7958" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">bps</span> <span class="ow" style="font-weight: 600;">in</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">8</span><span class="p">,</span> <span class="mi" style="color: #099;">16</span><span class="p">,</span> <span class="mi" style="color: #099;">33</span><span class="p">,</span> <span class="mi" style="color: #099;">64</span><span class="p">):</span></span>
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7959
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<pre style="margin: 0;">+<span id="LC7959" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">raises</span><span class="p">(</span><span class="nb" style="color: #0086b3;">ValueError</span><span class="p">):</span></span>
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<td class="diff-line-num new new_line" data-linenumber="7960" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7960
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<pre style="margin: 0;">+<span id="LC7960" class="line" lang="python"> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">astype</span><span class="p">(</span><span class="s" style="color: #d14;">'uint32'</span><span class="p">),</span> <span class="n" style="color: #333;">bitspersample</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">bps</span><span class="p">)</span></span>
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7961
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<pre style="margin: 0;">+<span id="LC7961" class="line" lang="python"></span>
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7962
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<pre style="margin: 0;">+<span id="LC7962" class="line" lang="python"></span>
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7493
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7963
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<pre style="margin: 0;"> <span id="LC7963" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_write_compress_none</span><span class="p">():</span></span>
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7494
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7964
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<pre style="margin: 0;"> <span id="LC7964" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test write compress=0."""</span></span>
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7495
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7965
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<pre style="margin: 0;"> <span id="LC7965" class="line" lang="python"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">WRITE_DATA</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="8231" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7761,7 +8231,7 @@ def test_write_compress_predictor():</td>
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7761
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8231
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<pre style="margin: 0;"> <span id="LC8231" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test write horizontal differencing."""</span></span>
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7762
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8232
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<pre style="margin: 0;"> <span id="LC8232" class="line" lang="python"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">WRITE_DATA</span></span>
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7763
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8233
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<pre style="margin: 0;"> <span id="LC8233" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TempFileName</span><span class="p">(</span><span class="s" style="color: #d14;">'compress_predictor'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">fname</span><span class="p">:</span></span>
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7764
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<pre style="margin: 0;">-<span id="LC7764" class="line" lang="python"> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">,</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">compress</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">6</span><span class="p">,</span> <span class="n" style="color: #333;">predictor</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">T<span class="idiff left right">rue</span></span><span class="p">)</span></span>
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8234
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<pre style="margin: 0;">+<span id="LC8234" class="line" lang="python"> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">,</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">compress</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">6</span><span class="p">,</span> <span class="n" style="color: #333;">predictor</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">T<span class="idiff left">IFF</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">PREDICTOR</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff right">HORIZONTAL</span></span><span class="p">)</span></span>
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7765
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8235
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<pre style="margin: 0;"> <span id="LC8235" class="line" lang="python"> <span class="n" style="color: #333;">assert_valid</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span></span>
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7766
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8236
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<pre style="margin: 0;"> <span id="LC8236" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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7767
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8237
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<pre style="margin: 0;"> <span id="LC8237" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8557,6 +9027,37 @@ def test_write_extrasamples_planar_rgb():</td>
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8557
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9027
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<pre style="margin: 0;"> <span id="LC9027" class="line" lang="python"> <span class="n" style="color: #333;">assert__str__</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">)</span></span>
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8558
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9028
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<pre style="margin: 0;"> <span id="LC9028" class="line" lang="python"></span>
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8559
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9029
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<pre style="margin: 0;"> <span id="LC9029" class="line" lang="python"></span>
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9030
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<pre style="margin: 0;">+<span id="LC9030" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_write_cfa</span><span class="p">():</span></span>
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9031
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<pre style="margin: 0;">+<span id="LC9031" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test write uncompressed CFA image."""</span></span>
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9032
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<pre style="margin: 0;">+<span id="LC9032" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># TODO: write a valid TIFF/EP file</span></span>
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9033
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<pre style="margin: 0;">+<span id="LC9033" class="line" lang="python"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">imread</span><span class="p">(</span></span>
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9034
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<pre style="margin: 0;">+<span id="LC9034" class="line" lang="python"> <span class="n" style="color: #333;">private_file</span><span class="p">(</span><span class="s" style="color: #d14;">'DNG/cinemadng/M14-1451_000085_cDNG_uncompressed.dng'</span><span class="p">)</span></span>
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9035
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<pre style="margin: 0;">+<span id="LC9035" class="line" lang="python"> <span class="p">)</span></span>
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9036
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<pre style="margin: 0;">+<span id="LC9036" class="line" lang="python"> <span class="n" style="color: #333;">extratags</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span></span>
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9037
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<pre style="margin: 0;">+<span id="LC9037" class="line" lang="python"> <span class="p">(</span><span class="mi" style="color: #099;">271</span><span class="p">,</span> <span class="s" style="color: #d14;">'s'</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="s" style="color: #d14;">'Make'</span><span class="p">,</span> <span class="bp" style="color: #999;">False</span><span class="p">),</span></span>
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9038
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<pre style="margin: 0;">+<span id="LC9038" class="line" lang="python"> <span class="p">(</span><span class="mi" style="color: #099;">272</span><span class="p">,</span> <span class="s" style="color: #d14;">'s'</span><span class="p">,</span> <span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="s" style="color: #d14;">'Model'</span><span class="p">,</span> <span class="bp" style="color: #999;">False</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9039" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9039
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<pre style="margin: 0;">+<span id="LC9039" class="line" lang="python"> <span class="p">(</span><span class="mi" style="color: #099;">33421</span><span class="p">,</span> <span class="s" style="color: #d14;">'H'</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">),</span> <span class="bp" style="color: #999;">False</span><span class="p">),</span> <span class="c1" style="color: #998; font-style: italic;"># CFARepeatPatternDim</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9040" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9040
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<pre style="margin: 0;">+<span id="LC9040" class="line" lang="python"> <span class="p">(</span><span class="mi" style="color: #099;">33422</span><span class="p">,</span> <span class="s" style="color: #d14;">'B'</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="s" style="color: #d14;">b'</span><span class="se" style="color: #d14;">\x00\x01\x01\x02</span><span class="s" style="color: #d14;">'</span><span class="p">,</span> <span class="bp" style="color: #999;">False</span><span class="p">),</span> <span class="c1" style="color: #998; font-style: italic;"># CFAPattern</span></span>
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9041
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<pre style="margin: 0;">+<span id="LC9041" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># (37398, 'B', 4, b'\x01\x00\x00\x00', False), # TIFF/EPStandardID</span></span>
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9042
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<pre style="margin: 0;">+<span id="LC9042" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># (37399, 'H', 1, 0) # SensingMethod Undefined</span></span>
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9043
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<pre style="margin: 0;">+<span id="LC9043" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># (50706, 'B', 4, b'\x01\x04\x00\x00', False), # DNGVersion</span></span>
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9044
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<pre style="margin: 0;">+<span id="LC9044" class="line" lang="python"> <span class="p">]</span></span>
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9045
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<pre style="margin: 0;">+<span id="LC9045" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TempFileName</span><span class="p">(</span><span class="s" style="color: #d14;">'write_cfa'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">fname</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9046" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9046
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<pre style="margin: 0;">+<span id="LC9046" class="line" lang="python"> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">,</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">photometric</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'CFA'</span><span class="p">,</span> <span class="n" style="color: #333;">software</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'Tifffile'</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9047" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9047
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<pre style="margin: 0;">+<span id="LC9047" class="line" lang="python"> <span class="n" style="color: #333;">datetime</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span> <span class="n" style="color: #333;">extratags</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">extratags</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9048" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9048
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<pre style="margin: 0;">+<span id="LC9048" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9049" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9049
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<pre style="margin: 0;">+<span id="LC9049" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9050" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9050
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<pre style="margin: 0;">+<span id="LC9050" class="line" lang="python"> <span class="n" style="color: #333;">page</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9051" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9051
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<pre style="margin: 0;">+<span id="LC9051" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">compression</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9052" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9052
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<pre style="margin: 0;">+<span id="LC9052" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">photometric</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">CFA</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9053" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9053
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<pre style="margin: 0;">+<span id="LC9053" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">imagewidth</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">960</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9054" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9054
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<pre style="margin: 0;">+<span id="LC9054" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">imagelength</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">540</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9055" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9055
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<pre style="margin: 0;">+<span id="LC9055" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">bitspersample</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">16</span></span>
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9056
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<pre style="margin: 0;">+<span id="LC9056" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">tags</span><span class="p">[</span><span class="s" style="color: #d14;">'CFARepeatPatternDim'</span><span class="p">].</span><span class="n" style="color: #333;">value</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">)</span></span>
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9057
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<pre style="margin: 0;">+<span id="LC9057" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">tags</span><span class="p">[</span><span class="s" style="color: #d14;">'CFAPattern'</span><span class="p">].</span><span class="n" style="color: #333;">value</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">b'</span><span class="se" style="color: #d14;">\x00\x01\x01\x02</span><span class="s" style="color: #d14;">'</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9058" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9058
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<pre style="margin: 0;">+<span id="LC9058" class="line" lang="python"> <span class="n" style="color: #333;">assert_array_equal</span><span class="p">(</span><span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">(),</span> <span class="n" style="color: #333;">data</span><span class="p">)</span></span>
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9059
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<pre style="margin: 0;">+<span id="LC9059" class="line" lang="python"></span>
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9060
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<pre style="margin: 0;">+<span id="LC9060" class="line" lang="python"></span>
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8560
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9061
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<pre style="margin: 0;"> <span id="LC9061" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_write_tiled_compressed</span><span class="p">():</span></span>
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8561
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9062
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<pre style="margin: 0;"> <span id="LC9062" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test write compressed tiles."""</span></span>
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8562
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9063
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<pre style="margin: 0;"> <span id="LC9063" class="line" lang="python"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">random_data</span><span class="p">(</span><span class="s" style="color: #d14;">'uint8'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">219</span><span class="p">,</span> <span class="mi" style="color: #099;">301</span><span class="p">))</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="8736" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="9237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8736,6 +9237,68 @@ def test_write_tileiter_separate():</td>
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8736
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9237
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<pre style="margin: 0;"> <span id="LC9237" class="line" lang="python"> <span class="n" style="color: #333;">assert_array_equal</span><span class="p">(</span><span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="n" style="color: #333;">squeeze</span><span class="p">(</span><span class="n" style="color: #333;">segment</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]),</span> <span class="n" style="color: #333;">data</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">])</span></span>
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8737
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9238
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<pre style="margin: 0;"> <span id="LC9238" class="line" lang="python"></span>
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8738
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9239
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<pre style="margin: 0;"> <span id="LC9239" class="line" lang="python"></span>
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9240
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<pre style="margin: 0;">+<span id="LC9240" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_write_pyramids</span><span class="p">():</span></span>
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9241
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<pre style="margin: 0;">+<span id="LC9241" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test write two pyramids to shaped file."""</span></span>
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9242
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<pre style="margin: 0;">+<span id="LC9242" class="line" lang="python"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">random_data</span><span class="p">(</span><span class="s" style="color: #d14;">'uint8'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">31</span><span class="p">,</span> <span class="mi" style="color: #099;">64</span><span class="p">,</span> <span class="mi" style="color: #099;">96</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">))</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9243" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9243
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<pre style="margin: 0;">+<span id="LC9243" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TempFileName</span><span class="p">(</span><span class="s" style="color: #d14;">'pyramids'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">fname</span><span class="p">:</span></span>
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9244
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<pre style="margin: 0;">+<span id="LC9244" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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9245
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<pre style="margin: 0;">+<span id="LC9245" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># use pages</span></span>
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9246
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<pre style="margin: 0;">+<span id="LC9246" class="line" lang="python"> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">tile</span><span class="o" style="font-weight: 600;">=</span><span class="p">(</span><span class="mi" style="color: #099;">16</span><span class="p">,</span> <span class="mi" style="color: #099;">16</span><span class="p">))</span></span>
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9247
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<pre style="margin: 0;">+<span id="LC9247" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># interrupt pyramid, e.g. thumbnail</span></span>
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9248
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<pre style="margin: 0;">+<span id="LC9248" class="line" lang="python"> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="p">:,</span> <span class="p">:,</span> <span class="mi" style="color: #099;">0</span><span class="p">])</span></span>
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9249
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<pre style="margin: 0;">+<span id="LC9249" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># pyramid levels</span></span>
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9250
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<pre style="margin: 0;">+<span id="LC9250" class="line" lang="python"> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">[:,</span> <span class="p">::</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="p">::</span><span class="mi" style="color: #099;">2</span><span class="p">],</span> <span class="n" style="color: #333;">tile</span><span class="o" style="font-weight: 600;">=</span><span class="p">(</span><span class="mi" style="color: #099;">16</span><span class="p">,</span> <span class="mi" style="color: #099;">16</span><span class="p">),</span> <span class="n" style="color: #333;">subfiletype</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">)</span></span>
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9251
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<pre style="margin: 0;">+<span id="LC9251" class="line" lang="python"> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">[:,</span> <span class="p">::</span><span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="p">::</span><span class="mi" style="color: #099;">4</span><span class="p">],</span> <span class="n" style="color: #333;">tile</span><span class="o" style="font-weight: 600;">=</span><span class="p">(</span><span class="mi" style="color: #099;">16</span><span class="p">,</span> <span class="mi" style="color: #099;">16</span><span class="p">),</span> <span class="n" style="color: #333;">subfiletype</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">)</span></span>
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9252
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<pre style="margin: 0;">+<span id="LC9252" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># second pyramid using sgi with downsampling factor 3</span></span>
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9253
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<pre style="margin: 0;">+<span id="LC9253" class="line" lang="python"> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">tile</span><span class="o" style="font-weight: 600;">=</span><span class="p">(</span><span class="mi" style="color: #099;">16</span><span class="p">,</span> <span class="mi" style="color: #099;">16</span><span class="p">,</span> <span class="mi" style="color: #099;">16</span><span class="p">))</span></span>
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9254
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<pre style="margin: 0;">+<span id="LC9254" class="line" lang="python"> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">[::</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="p">::</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="p">::</span><span class="mi" style="color: #099;">3</span><span class="p">],</span> <span class="n" style="color: #333;">tile</span><span class="o" style="font-weight: 600;">=</span><span class="p">(</span><span class="mi" style="color: #099;">16</span><span class="p">,</span> <span class="mi" style="color: #099;">16</span><span class="p">,</span> <span class="mi" style="color: #099;">16</span><span class="p">),</span> <span class="n" style="color: #333;">subfiletype</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">)</span></span>
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9255
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<pre style="margin: 0;">+<span id="LC9255" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC9256" class="line" lang="python"> <span class="n" style="color: #333;">assert_valid</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9257" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9257
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<pre style="margin: 0;">+<span id="LC9257" class="line" lang="python"></span>
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<td class="diff-line-num new new_line" data-linenumber="9258" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9258
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<pre style="margin: 0;">+<span id="LC9258" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9259" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9259
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<pre style="margin: 0;">+<span id="LC9259" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">3</span> <span class="o" style="font-weight: 600;">*</span> <span class="mi" style="color: #099;">31</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">2</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">1</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9260" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9260
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<pre style="margin: 0;">+<span id="LC9260" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">3</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9261" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9261
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<pre style="margin: 0;">+<span id="LC9261" class="line" lang="python"></span>
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<td class="diff-line-num new new_line" data-linenumber="9262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9262
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<pre style="margin: 0;">+<span id="LC9262" class="line" lang="python"> <span class="n" style="color: #333;">series</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9263" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9263
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<pre style="margin: 0;">+<span id="LC9263" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">is_pyramid</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9264" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9264
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<pre style="margin: 0;">+<span id="LC9264" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">levels</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">3</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9265" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9265
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<pre style="margin: 0;">+<span id="LC9265" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">levels</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">].</span><span class="n" style="color: #333;">pages</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">31</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9266" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9266
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<pre style="margin: 0;">+<span id="LC9266" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">levels</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">].</span><span class="n" style="color: #333;">pages</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">31</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9267
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<pre style="margin: 0;">+<span id="LC9267" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">levels</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">].</span><span class="n" style="color: #333;">pages</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">31</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9268" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9268
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<pre style="margin: 0;">+<span id="LC9268" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">levels</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">].</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">31</span><span class="p">,</span> <span class="mi" style="color: #099;">64</span><span class="p">,</span> <span class="mi" style="color: #099;">96</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9269" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9269
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<pre style="margin: 0;">+<span id="LC9269" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">levels</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">].</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">31</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">48</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9270" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9270
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<pre style="margin: 0;">+<span id="LC9270" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">levels</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">].</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">31</span><span class="p">,</span> <span class="mi" style="color: #099;">16</span><span class="p">,</span> <span class="mi" style="color: #099;">24</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9271" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9271
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<pre style="margin: 0;">+<span id="LC9271" class="line" lang="python"></span>
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<td class="diff-line-num new new_line" data-linenumber="9272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9272
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<pre style="margin: 0;">+<span id="LC9272" class="line" lang="python"> <span class="n" style="color: #333;">series</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9273" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9273
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<pre style="margin: 0;">+<span id="LC9273" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">is_pyramid</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9274" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9274
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<pre style="margin: 0;">+<span id="LC9274" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">64</span><span class="p">,</span> <span class="mi" style="color: #099;">96</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9275" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9275
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<pre style="margin: 0;">+<span id="LC9275" class="line" lang="python"></span>
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<td class="diff-line-num new new_line" data-linenumber="9276" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9276
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<pre style="margin: 0;">+<span id="LC9276" class="line" lang="python"> <span class="n" style="color: #333;">series</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9277" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9277
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<pre style="margin: 0;">+<span id="LC9277" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">is_pyramid</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9278" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9278
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<pre style="margin: 0;">+<span id="LC9278" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">levels</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">2</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9279" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9279
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<pre style="margin: 0;">+<span id="LC9279" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">levels</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">].</span><span class="n" style="color: #333;">pages</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9280" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9280
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<pre style="margin: 0;">+<span id="LC9280" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">levels</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">].</span><span class="n" style="color: #333;">pages</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9281" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9281
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<pre style="margin: 0;">+<span id="LC9281" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">levels</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">].</span><span class="n" style="color: #333;">keyframe</span><span class="p">.</span><span class="n" style="color: #333;">is_sgi</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9282" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9282
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<pre style="margin: 0;">+<span id="LC9282" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">levels</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">].</span><span class="n" style="color: #333;">keyframe</span><span class="p">.</span><span class="n" style="color: #333;">is_sgi</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9283" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9283
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<pre style="margin: 0;">+<span id="LC9283" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">levels</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">].</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">31</span><span class="p">,</span> <span class="mi" style="color: #099;">64</span><span class="p">,</span> <span class="mi" style="color: #099;">96</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9284" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9284
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<pre style="margin: 0;">+<span id="LC9284" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">levels</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">].</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">11</span><span class="p">,</span> <span class="mi" style="color: #099;">22</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9285" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9285
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<pre style="margin: 0;">+<span id="LC9285" class="line" lang="python"></span>
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9286
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<pre style="margin: 0;">+<span id="LC9286" class="line" lang="python"> <span class="n" style="color: #333;">assert_array_equal</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">())</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9287" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9287
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<pre style="margin: 0;">+<span id="LC9287" class="line" lang="python"> <span class="n" style="color: #333;">assert_array_equal</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">(</span><span class="n" style="color: #333;">series</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">level</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">))</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9288" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9288
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<pre style="margin: 0;">+<span id="LC9288" class="line" lang="python"> <span class="n" style="color: #333;">assert_array_equal</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">[:,</span> <span class="p">::</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="p">::</span><span class="mi" style="color: #099;">2</span><span class="p">],</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9289" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9289
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<pre style="margin: 0;">+<span id="LC9289" class="line" lang="python"> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">(</span><span class="n" style="color: #333;">series</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">level</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">))</span></span>
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9290
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<pre style="margin: 0;">+<span id="LC9290" class="line" lang="python"> <span class="n" style="color: #333;">assert_array_equal</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">[:,</span> <span class="p">::</span><span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="p">::</span><span class="mi" style="color: #099;">4</span><span class="p">],</span></span>
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9291
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<pre style="margin: 0;">+<span id="LC9291" class="line" lang="python"> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">(</span><span class="n" style="color: #333;">series</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">level</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">2</span><span class="p">))</span></span>
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9292
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<pre style="margin: 0;">+<span id="LC9292" class="line" lang="python"></span>
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9293
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<pre style="margin: 0;">+<span id="LC9293" class="line" lang="python"> <span class="n" style="color: #333;">assert_array_equal</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="p">:,</span> <span class="p">:,</span> <span class="mi" style="color: #099;">0</span><span class="p">],</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">(</span><span class="n" style="color: #333;">series</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">))</span></span>
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9294
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<pre style="margin: 0;">+<span id="LC9294" class="line" lang="python"></span>
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9295
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<pre style="margin: 0;">+<span id="LC9295" class="line" lang="python"> <span class="n" style="color: #333;">assert_array_equal</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">(</span><span class="n" style="color: #333;">series</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">2</span><span class="p">))</span></span>
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9296
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<pre style="margin: 0;">+<span id="LC9296" class="line" lang="python"> <span class="n" style="color: #333;">assert_array_equal</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">[::</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="p">::</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="p">::</span><span class="mi" style="color: #099;">3</span><span class="p">],</span></span>
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9297
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<pre style="margin: 0;">+<span id="LC9297" class="line" lang="python"> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">(</span><span class="n" style="color: #333;">series</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="n" style="color: #333;">level</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">))</span></span>
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9298
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<pre style="margin: 0;">+<span id="LC9298" class="line" lang="python"></span>
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9299
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<pre style="margin: 0;">+<span id="LC9299" class="line" lang="python"> <span class="n" style="color: #333;">assert__str__</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">)</span></span>
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9300
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<pre style="margin: 0;">+<span id="LC9300" class="line" lang="python"></span>
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9301
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<pre style="margin: 0;">+<span id="LC9301" class="line" lang="python"></span>
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8739
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9302
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<pre style="margin: 0;"> <span id="LC9302" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_write_volume</span><span class="p">():</span></span>
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8740
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9303
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<pre style="margin: 0;"> <span id="LC9303" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test write tiled volume."""</span></span>
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8741
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9304
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<pre style="margin: 0;"> <span id="LC9304" class="line" lang="python"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">random_data</span><span class="p">(</span><span class="s" style="color: #d14;">'uint8'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">253</span><span class="p">,</span> <span class="mi" style="color: #099;">64</span><span class="p">,</span> <span class="mi" style="color: #099;">96</span><span class="p">))</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="8762" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="9325" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8762,6 +9325,33 @@ def test_write_volume():</td>
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8762
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9325
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<pre style="margin: 0;"> <span id="LC9325" class="line" lang="python"> <span class="n" style="color: #333;">assert__str__</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">)</span></span>
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8763
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9326
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<pre style="margin: 0;"> <span id="LC9326" class="line" lang="python"></span>
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8764
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9327
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<pre style="margin: 0;"> <span id="LC9327" class="line" lang="python"></span>
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9328
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<pre style="margin: 0;">+<span id="LC9328" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_write_volume_png</span><span class="p">():</span></span>
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9329
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<pre style="margin: 0;">+<span id="LC9329" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test write tiled volume using an image compressor."""</span></span>
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9330
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<pre style="margin: 0;">+<span id="LC9330" class="line" lang="python"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">random_data</span><span class="p">(</span><span class="s" style="color: #d14;">'uint8'</span><span class="p">,</span> <span class="p">(</span><span class="mi" style="color: #099;">16</span><span class="p">,</span> <span class="mi" style="color: #099;">64</span><span class="p">,</span> <span class="mi" style="color: #099;">96</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">))</span></span>
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9331
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<pre style="margin: 0;">+<span id="LC9331" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TempFileName</span><span class="p">(</span><span class="s" style="color: #d14;">'volume_png'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">fname</span><span class="p">:</span></span>
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9332
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<pre style="margin: 0;">+<span id="LC9332" class="line" lang="python"> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">,</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">tile</span><span class="o" style="font-weight: 600;">=</span><span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">64</span><span class="p">,</span> <span class="mi" style="color: #099;">64</span><span class="p">),</span> <span class="n" style="color: #333;">compress</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'png'</span><span class="p">)</span></span>
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9333
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<pre style="margin: 0;">+<span id="LC9333" class="line" lang="python"> <span class="n" style="color: #333;">assert_valid</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9334" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9334
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<pre style="margin: 0;">+<span id="LC9334" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9335" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9335
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<pre style="margin: 0;">+<span id="LC9335" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9336" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9336
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<pre style="margin: 0;">+<span id="LC9336" class="line" lang="python"> <span class="n" style="color: #333;">page</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9337" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9337
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<pre style="margin: 0;">+<span id="LC9337" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">is_sgi</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9338" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9338
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<pre style="margin: 0;">+<span id="LC9338" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">is_tiled</span></span>
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<td class="diff-line-num new old_line" data-linenumber="8765" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="9339" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9339
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<pre style="margin: 0;">+<span id="LC9339" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">compression</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">TIFF</span><span class="p">.</span><span class="n" style="color: #333;">COMPRESSION</span><span class="p">.</span><span class="n" style="color: #333;">PNG</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9340" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9340
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<pre style="margin: 0;">+<span id="LC9340" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">is_contiguous</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9341" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9341
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<pre style="margin: 0;">+<span id="LC9341" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">planarconfig</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">CONTIG</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="9342" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9342
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<pre style="margin: 0;">+<span id="LC9342" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">photometric</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">RGB</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="9343" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9343
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<pre style="margin: 0;">+<span id="LC9343" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">imagewidth</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">96</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="9344" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9344
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<pre style="margin: 0;">+<span id="LC9344" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">imagelength</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">64</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="9345" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9345
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<pre style="margin: 0;">+<span id="LC9345" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">imagedepth</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">16</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="9346" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9346
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<pre style="margin: 0;">+<span id="LC9346" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">tilewidth</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">64</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="9347" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9347
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<pre style="margin: 0;">+<span id="LC9347" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">tilelength</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">64</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="9348" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9348
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<pre style="margin: 0;">+<span id="LC9348" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">tiledepth</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="9349" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9349
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<pre style="margin: 0;">+<span id="LC9349" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">samplesperpixel</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">3</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="9350" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9350
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<pre style="margin: 0;">+<span id="LC9350" class="line" lang="python"> <span class="n" style="color: #333;">image</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">()</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="9351" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9351
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<pre style="margin: 0;">+<span id="LC9351" class="line" lang="python"> <span class="n" style="color: #333;">assert_array_equal</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">image</span><span class="p">)</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="9352" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9352
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<pre style="margin: 0;">+<span id="LC9352" class="line" lang="python"> <span class="n" style="color: #333;">assert__str__</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">)</span></span>
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9353
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<pre style="margin: 0;">+<span id="LC9353" class="line" lang="python"></span>
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9354
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<pre style="margin: 0;">+<span id="LC9354" class="line" lang="python"></span>
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8765
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9355
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<pre style="margin: 0;"> <span id="LC9355" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_write_volume_5d_planar_rgb</span><span class="p">():</span></span>
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8766
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9356
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<pre style="margin: 0;"> <span id="LC9356" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test write 5D array as grayscale volumes."""</span></span>
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8767
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9357
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<pre style="margin: 0;"> <span id="LC9357" class="line" lang="python"> <span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">256</span><span class="p">,</span> <span class="mi" style="color: #099;">64</span><span class="p">,</span> <span class="mi" style="color: #099;">96</span><span class="p">)</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="9859" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9269,52 +9859,28 @@ def test_write_imagej_roundtrip():</td>
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9269
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9859
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<pre style="margin: 0;"> <span id="LC9859" class="line" lang="python"> <span class="n" style="color: #333;">assert_valid</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span></span>
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9270
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9860
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<pre style="margin: 0;"> <span id="LC9860" class="line" lang="python"></span>
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9271
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9861
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<pre style="margin: 0;"> <span id="LC9861" class="line" lang="python"></span>
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9272
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<td class="diff-line-num new_line old" data-linenumber="9862" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9272" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_write_imagej_hyperstack</span><span class="p">():</span></span>
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9273
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<td class="diff-line-num new_line old" data-linenumber="9862" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9273" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test write truncated ImageJ hyperstack."""</span></span>
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9862
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<pre style="margin: 0;">+<span id="LC9862" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">mark</span><span class="p">.</span><span class="n" style="color: #333;">parametrize</span><span class="p">(</span><span class="s" style="color: #d14;">'mmap'</span><span class="p">,</span> <span class="p">[</span><span class="bp" style="color: #999;">False</span><span class="p">,</span> <span class="bp" style="color: #999;">True</span><span class="p">])</span></span>
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9863
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<pre style="margin: 0;">+<span id="LC9863" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">mark</span><span class="p">.</span><span class="n" style="color: #333;">parametrize</span><span class="p">(</span><span class="s" style="color: #d14;">'truncate'</span><span class="p">,</span> <span class="p">[</span><span class="bp" style="color: #999;">False</span><span class="p">,</span> <span class="bp" style="color: #999;">True</span><span class="p">])</span></span>
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9864
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<pre style="margin: 0;">+<span id="LC9864" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_write_imagej_hyperstack</span><span class="p">(</span><span class="n" style="color: #333;">truncate</span><span class="p">,</span> <span class="n" style="color: #333;">mmap</span><span class="p">):</span></span>
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9865
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<pre style="margin: 0;">+<span id="LC9865" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test write ImageJ hyperstack."""</span></span>
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9274
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9866
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<pre style="margin: 0;"> <span id="LC9866" class="line" lang="python"> <span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">6</span><span class="p">,</span> <span class="mi" style="color: #099;">7</span><span class="p">,</span> <span class="mi" style="color: #099;">49</span><span class="p">,</span> <span class="mi" style="color: #099;">61</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">)</span></span>
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9275
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9867
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<pre style="margin: 0;"> <span id="LC9867" class="line" lang="python"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="n" style="color: #333;">empty</span><span class="p">(</span><span class="n" style="color: #333;">shape</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'uint8'</span><span class="p">)</span></span>
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9276
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<td class="diff-line-num new_line" data-linenumber="9868" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9868
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<pre style="margin: 0;"> <span id="LC9868" class="line" lang="python"> <span class="n" style="color: #333;">data</span><span class="p">[:]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="n" style="color: #333;">arange</span><span class="p">(</span><span class="mi" style="color: #099;">210</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'uint8'</span><span class="p">).</span><span class="n" style="color: #333;">reshape</span><span class="p">(</span><span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">6</span><span class="p">,</span> <span class="mi" style="color: #099;">7</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">)</span></span>
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9277
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9869
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<pre style="margin: 0;"> <span id="LC9869" class="line" lang="python"></span>
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9278
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<pre style="margin: 0;">-<span id="LC9278" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TempFileName</span><span class="p">(</span><span class="s" style="color: #d14;">'imagej_hyperstack'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">fname</span><span class="p">:</span></span>
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<td class="diff-line-num old old_line" data-linenumber="9279" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9279
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<pre style="margin: 0;">-<span id="LC9279" class="line" lang="python"> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">,</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">imagej</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span> <span class="n" style="color: #333;">truncate</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">)</span></span>
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9280
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<pre style="margin: 0;">-<span id="LC9280" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># assert file</span></span>
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<td class="diff-line-num old old_line" data-linenumber="9281" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9281
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<td class="diff-line-num new_line old" data-linenumber="9870" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9281" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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9282
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<td class="diff-line-num new_line old" data-linenumber="9870" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9282" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">is_bigtiff</span></span>
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<td class="diff-line-num old old_line" data-linenumber="9283" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9283
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<td class="diff-line-num new_line old" data-linenumber="9870" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9283" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span></span>
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<td class="diff-line-num old old_line" data-linenumber="9284" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9284
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<td class="diff-line-num new_line old" data-linenumber="9870" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9284" class="line" lang="python"> <span class="n" style="color: #333;">page</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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<td class="diff-line-num old old_line" data-linenumber="9285" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9285
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<td class="diff-line-num new_line old" data-linenumber="9870" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9285" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">is_contiguous</span></span>
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<td class="diff-line-num old old_line" data-linenumber="9286" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9286
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<td class="diff-line-num new_line old" data-linenumber="9870" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9286" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">planarconfig</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">CONTIG</span></span>
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<td class="diff-line-num old old_line" data-linenumber="9287" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9287
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<td class="diff-line-num new_line old" data-linenumber="9870" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9287" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">photometric</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">RGB</span></span>
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<td class="diff-line-num old old_line" data-linenumber="9288" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9288
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<td class="diff-line-num new_line old" data-linenumber="9870" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9288" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">imagewidth</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">61</span></span>
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<td class="diff-line-num old old_line" data-linenumber="9289" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9289
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<td class="diff-line-num new_line old" data-linenumber="9870" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9289" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">imagelength</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">49</span></span>
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<td class="diff-line-num old old_line" data-linenumber="9290" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9290
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<td class="diff-line-num new_line old" data-linenumber="9870" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9290" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">samplesperpixel</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">3</span></span>
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<td class="diff-line-num old old_line" data-linenumber="9291" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9291
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<pre style="margin: 0;">-<span id="LC9291" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># assert series properties</span></span>
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9292
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<td class="diff-line-num new_line old" data-linenumber="9870" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9292" class="line" lang="python"> <span class="n" style="color: #333;">series</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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9293
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<td class="diff-line-num new_line old" data-linenumber="9870" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9293" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">shape</span></span>
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<td class="diff-line-num old old_line" data-linenumber="9294" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9294
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<td class="diff-line-num new_line old" data-linenumber="9870" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9294" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">_pages</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span></span>
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<td class="diff-line-num old old_line" data-linenumber="9295" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9295
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<td class="diff-line-num new_line old" data-linenumber="9870" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9295" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span></span>
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<td class="diff-line-num old old_line" data-linenumber="9296" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9296
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<td class="diff-line-num new_line old" data-linenumber="9870" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9296" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">dtype</span><span class="p">.</span><span class="n" style="color: #333;">name</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'uint8'</span></span>
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<td class="diff-line-num old old_line" data-linenumber="9297" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9297
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<td class="diff-line-num new_line old" data-linenumber="9870" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9297" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">axes</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'TZCYXS'</span></span>
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9298
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<pre style="margin: 0;">-<span id="LC9298" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># assert data</span></span>
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9299
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<pre style="margin: 0;">-<span id="LC9299" class="line" lang="python"> <span class="n" style="color: #333;">image</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">(</span><span class="n" style="color: #333;">out</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'memmap'</span><span class="p">)</span></span>
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9300
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<pre style="margin: 0;">-<span id="LC9300" class="line" lang="python"> <span class="n" style="color: #333;">assert_array_equal</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">squeeze</span><span class="p">(),</span> <span class="n" style="color: #333;">image</span><span class="p">.</span><span class="n" style="color: #333;">squeeze</span><span class="p">())</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9870" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9870
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<pre style="margin: 0;">+<span id="LC9870" class="line" lang="python"> <span class="n" style="color: #333;">_truncate</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="s" style="color: #d14;">''</span><span class="p">,</span> <span class="s" style="color: #d14;">'_trunc'</span><span class="p">][</span><span class="n" style="color: #333;">truncate</span><span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9871" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9871
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<pre style="margin: 0;">+<span id="LC9871" class="line" lang="python"> <span class="n" style="color: #333;">_memmap</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="s" style="color: #d14;">''</span><span class="p">,</span> <span class="s" style="color: #d14;">'_memmap'</span><span class="p">][</span><span class="n" style="color: #333;">mmap</span><span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9872" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9872
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<pre style="margin: 0;">+<span id="LC9872" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TempFileName</span><span class="p">(</span><span class="s" style="color: #d14;">f'imagej_hyperstack</span><span class="si" style="color: #d14;">{</span><span class="n" style="color: #333;">_truncate</span><span class="si" style="color: #d14;">}{</span><span class="n" style="color: #333;">_memmap</span><span class="si" style="color: #d14;">}</span><span class="s" style="color: #d14;">'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">fname</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9873" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9873
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<pre style="margin: 0;">+<span id="LC9873" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">mmap</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9874" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9874
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<pre style="margin: 0;">+<span id="LC9874" class="line" lang="python"> <span class="n" style="color: #333;">image</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">memmap</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">,</span> <span class="n" style="color: #333;">shape</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">shape</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">dtype</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9875" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9875
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<pre style="margin: 0;">+<span id="LC9875" class="line" lang="python"> <span class="n" style="color: #333;">imagej</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span> <span class="n" style="color: #333;">truncate</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">truncate</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9876" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9876
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<pre style="margin: 0;">+<span id="LC9876" class="line" lang="python"> <span class="n" style="color: #333;">image</span><span class="p">[:]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">data</span></span>
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9301
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9877
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<pre style="margin: 0;"> <span id="LC9877" class="line" lang="python"> <span class="k" style="font-weight: 600;">del</span> <span class="n" style="color: #333;">image</span></span>
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9302
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<pre style="margin: 0;">-<span id="LC9302" class="line" lang="python"> <span class="n" style="color: #333;">assert__str__</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">)</span></span>
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9303
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<pre style="margin: 0;">-<span id="LC9303" class="line" lang="python"> <span class="n" style="color: #333;">assert_valid</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span></span>
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9304
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<pre style="margin: 0;">-<span id="LC9304" class="line" lang="python"></span>
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9305
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<pre style="margin: 0;">-<span id="LC9305" class="line" lang="python"></span>
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9306
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<pre style="margin: 0;">-<span id="LC9306" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_write_imagej_hyperstack_nontrunc</span><span class="p">():</span></span>
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9307
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<pre style="margin: 0;">-<span id="LC9307" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test write non-truncated ImageJ hyperstack."""</span></span>
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9308
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<td class="diff-line-num new_line old" data-linenumber="9878" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9308" class="line" lang="python"> <span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">6</span><span class="p">,</span> <span class="mi" style="color: #099;">7</span><span class="p">,</span> <span class="mi" style="color: #099;">49</span><span class="p">,</span> <span class="mi" style="color: #099;">61</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">)</span></span>
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9309
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<pre style="margin: 0;">-<span id="LC9309" class="line" lang="python"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="n" style="color: #333;">empty</span><span class="p">(</span><span class="n" style="color: #333;">shape</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'uint8'</span><span class="p">)</span></span>
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9310
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<pre style="margin: 0;">-<span id="LC9310" class="line" lang="python"> <span class="n" style="color: #333;">data</span><span class="p">[:]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="n" style="color: #333;">arange</span><span class="p">(</span><span class="mi" style="color: #099;">210</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'uint8'</span><span class="p">).</span><span class="n" style="color: #333;">reshape</span><span class="p">(</span><span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">6</span><span class="p">,</span> <span class="mi" style="color: #099;">7</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">)</span></span>
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9311
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<pre style="margin: 0;">-<span id="LC9311" class="line" lang="python"></span>
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9312
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<pre style="margin: 0;">-<span id="LC9312" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TempFileName</span><span class="p">(</span><span class="s" style="color: #d14;">'imagej_hyperstack_nontrunc'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">fname</span><span class="p">:</span></span>
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9313
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<pre style="margin: 0;">-<span id="LC9313" class="line" lang="python"> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">,</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">imagej</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">)</span></span>
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<td class="diff-line-num new old_line" data-linenumber="9314" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="9878" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9878
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<pre style="margin: 0;">+<span id="LC9878" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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<td class="diff-line-num new old_line" data-linenumber="9314" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="9879" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9879
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<pre style="margin: 0;">+<span id="LC9879" class="line" lang="python"> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">,</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">truncate</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">truncate</span><span class="p">,</span> <span class="n" style="color: #333;">imagej</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">)</span></span>
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<td class="diff-line-num old_line" data-linenumber="9314" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9314
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<td class="diff-line-num new_line" data-linenumber="9880" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9880
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<pre style="margin: 0;"> <span id="LC9880" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># assert file</span></span>
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<td class="diff-line-num old_line" data-linenumber="9315" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9315
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<td class="diff-line-num new_line" data-linenumber="9881" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9881
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<pre style="margin: 0;"> <span id="LC9881" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num old_line" data-linenumber="9316" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9316
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<td class="diff-line-num new_line" data-linenumber="9882" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9882
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<pre style="margin: 0;"> <span id="LC9882" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">is_bigtiff</span></span>
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<td class="diff-line-num old old_line" data-linenumber="9317" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9317
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<td class="diff-line-num new_line old" data-linenumber="9883" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9317" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">210</span></span>
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<td class="diff-line-num new old_line" data-linenumber="9318" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="9883" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9883
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<pre style="margin: 0;">+<span id="LC9883" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;"><span class="idiff left">1</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">if</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">truncate</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">else</span></span><span class="idiff right"> </span><span class="mi" style="color: #099;">210</span></span>
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<td class="diff-line-num old_line" data-linenumber="9318" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9318
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<td class="diff-line-num new_line" data-linenumber="9884" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9884
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<pre style="margin: 0;"> <span id="LC9884" class="line" lang="python"> <span class="n" style="color: #333;">page</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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<td class="diff-line-num old_line" data-linenumber="9319" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9319
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<td class="diff-line-num new_line" data-linenumber="9885" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9885
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<pre style="margin: 0;"> <span id="LC9885" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">is_contiguous</span></span>
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<td class="diff-line-num old_line" data-linenumber="9320" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9320
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<td class="diff-line-num new_line" data-linenumber="9886" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9886
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<pre style="margin: 0;"> <span id="LC9886" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">planarconfig</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">CONTIG</span></span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="9326" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="9892" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9326,7 +9892,7 @@ def test_write_imagej_hyperstack_nontrunc():</td>
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9326
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<td class="diff-line-num new_line" data-linenumber="9892" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9892
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<pre style="margin: 0;"> <span id="LC9892" class="line" lang="python"> <span class="n" style="color: #333;">series</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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<td class="diff-line-num old_line" data-linenumber="9327" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9327
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<td class="diff-line-num new_line" data-linenumber="9893" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9893
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<pre style="margin: 0;"> <span id="LC9893" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">shape</span></span>
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<td class="diff-line-num old_line" data-linenumber="9328" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9328
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<td class="diff-line-num new_line" data-linenumber="9894" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9894
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<pre style="margin: 0;"> <span id="LC9894" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">_pages</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span></span>
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<td class="diff-line-num old old_line" data-linenumber="9329" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9329
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<td class="diff-line-num new_line old" data-linenumber="9895" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9329" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">210</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="9330" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="9895" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9895
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<pre style="margin: 0;">+<span id="LC9895" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;"><span class="idiff left">1</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">if</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">truncate</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">else</span></span><span class="idiff right"> </span><span class="mi" style="color: #099;">210</span></span>
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<td class="diff-line-num old_line" data-linenumber="9330" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9330
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<td class="diff-line-num new_line" data-linenumber="9896" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9896
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<pre style="margin: 0;"> <span id="LC9896" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">dtype</span><span class="p">.</span><span class="n" style="color: #333;">name</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'uint8'</span></span>
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<td class="diff-line-num old_line" data-linenumber="9331" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9331
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<td class="diff-line-num new_line" data-linenumber="9897" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9897
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<pre style="margin: 0;"> <span id="LC9897" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">axes</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'TZCYXS'</span></span>
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<td class="diff-line-num old_line" data-linenumber="9332" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9332
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<td class="diff-line-num new_line" data-linenumber="9898" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9898
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<pre style="margin: 0;"> <span id="LC9898" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># assert data</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="9904" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9338,6 +9904,7 @@ def test_write_imagej_hyperstack_nontrunc():</td>
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9338
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9904
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<pre style="margin: 0;"> <span id="LC9904" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">i</span><span class="p">,</span> <span class="n" style="color: #333;">page</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">enumerate</span><span class="p">(</span><span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">):</span></span>
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9339
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9905
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<pre style="margin: 0;"> <span id="LC9905" class="line" lang="python"> <span class="n" style="color: #333;">image</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">()</span></span>
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9340
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<td class="diff-line-num new_line" data-linenumber="9906" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9906
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<pre style="margin: 0;"> <span id="LC9906" class="line" lang="python"> <span class="n" style="color: #333;">assert_array_equal</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">],</span> <span class="n" style="color: #333;">image</span><span class="p">)</span></span>
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9907
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<pre style="margin: 0;">+<span id="LC9907" class="line" lang="python"> <span class="k" style="font-weight: 600;">del</span> <span class="n" style="color: #333;">image</span></span>
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9341
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9908
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<pre style="margin: 0;"> <span id="LC9908" class="line" lang="python"> <span class="n" style="color: #333;">assert__str__</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">)</span></span>
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9342
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9909
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<pre style="margin: 0;"> <span id="LC9909" class="line" lang="python"> <span class="n" style="color: #333;">assert_valid</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span></span>
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9343
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9910
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<pre style="margin: 0;"> <span id="LC9910" class="line" lang="python"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9413,6 +9980,103 @@ def test_write_imagej_raw():</td>
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9413
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9980
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<pre style="margin: 0;"> <span id="LC9980" class="line" lang="python"> <span class="n" style="color: #333;">assert__str__</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">)</span></span>
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9981
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<pre style="margin: 0;"> <span id="LC9981" class="line" lang="python"></span>
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9415
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9982
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<pre style="margin: 0;"> <span id="LC9982" class="line" lang="python"></span>
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9983
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<pre style="margin: 0;">+<span id="LC9983" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">mark</span><span class="p">.</span><span class="n" style="color: #333;">skipif</span><span class="p">(</span><span class="n" style="color: #333;">SKIP_EXTENDED</span><span class="p">,</span> <span class="n" style="color: #333;">reason</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">REASON</span><span class="p">)</span></span>
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9984
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<pre style="margin: 0;">+<span id="LC9984" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">mark</span><span class="p">.</span><span class="n" style="color: #333;">parametrize</span><span class="p">(</span></span>
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9985
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<pre style="margin: 0;">+<span id="LC9985" class="line" lang="python"> <span class="s" style="color: #d14;">'shape, axes'</span><span class="p">,</span></span>
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9986
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<pre style="margin: 0;">+<span id="LC9986" class="line" lang="python"> <span class="p">[</span></span>
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9987
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<pre style="margin: 0;">+<span id="LC9987" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">219</span><span class="p">,</span> <span class="mi" style="color: #099;">301</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">),</span> <span class="bp" style="color: #999;">None</span><span class="p">),</span></span>
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9988
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<pre style="margin: 0;">+<span id="LC9988" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">219</span><span class="p">,</span> <span class="mi" style="color: #099;">301</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">),</span> <span class="bp" style="color: #999;">None</span><span class="p">),</span></span>
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9989
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<pre style="margin: 0;">+<span id="LC9989" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">219</span><span class="p">,</span> <span class="mi" style="color: #099;">301</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">),</span> <span class="bp" style="color: #999;">None</span><span class="p">),</span></span>
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9990
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<pre style="margin: 0;">+<span id="LC9990" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">219</span><span class="p">,</span> <span class="mi" style="color: #099;">301</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">),</span> <span class="bp" style="color: #999;">None</span><span class="p">),</span></span>
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9991
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<pre style="margin: 0;">+<span id="LC9991" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">219</span><span class="p">,</span> <span class="mi" style="color: #099;">301</span><span class="p">,</span> <span class="mi" style="color: #099;">5</span><span class="p">),</span> <span class="bp" style="color: #999;">None</span><span class="p">),</span></span>
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<pre style="margin: 0;">+<span id="LC9992" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">219</span><span class="p">,</span> <span class="mi" style="color: #099;">301</span><span class="p">),</span> <span class="bp" style="color: #999;">None</span><span class="p">),</span></span>
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9993
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<pre style="margin: 0;">+<span id="LC9993" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mi" style="color: #099;">219</span><span class="p">,</span> <span class="mi" style="color: #099;">301</span><span class="p">),</span> <span class="bp" style="color: #999;">None</span><span class="p">),</span></span>
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9994
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<pre style="margin: 0;">+<span id="LC9994" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">219</span><span class="p">,</span> <span class="mi" style="color: #099;">301</span><span class="p">),</span> <span class="bp" style="color: #999;">None</span><span class="p">),</span></span>
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9995
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<pre style="margin: 0;">+<span id="LC9995" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">219</span><span class="p">,</span> <span class="mi" style="color: #099;">301</span><span class="p">),</span> <span class="bp" style="color: #999;">None</span><span class="p">),</span></span>
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9996
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<pre style="margin: 0;">+<span id="LC9996" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">219</span><span class="p">,</span> <span class="mi" style="color: #099;">301</span><span class="p">),</span> <span class="bp" style="color: #999;">None</span><span class="p">),</span></span>
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9997
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<pre style="margin: 0;">+<span id="LC9997" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">219</span><span class="p">,</span> <span class="mi" style="color: #099;">301</span><span class="p">),</span> <span class="bp" style="color: #999;">None</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9998" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9998
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<pre style="margin: 0;">+<span id="LC9998" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">219</span><span class="p">,</span> <span class="mi" style="color: #099;">301</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">),</span> <span class="bp" style="color: #999;">None</span><span class="p">),</span></span>
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9999
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<pre style="margin: 0;">+<span id="LC9999" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">219</span><span class="p">,</span> <span class="mi" style="color: #099;">301</span><span class="p">),</span> <span class="bp" style="color: #999;">None</span><span class="p">),</span></span>
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10000
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<pre style="margin: 0;">+<span id="LC10000" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">219</span><span class="p">,</span> <span class="mi" style="color: #099;">301</span><span class="p">),</span> <span class="bp" style="color: #999;">None</span><span class="p">),</span></span>
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10001
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<pre style="margin: 0;">+<span id="LC10001" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">219</span><span class="p">,</span> <span class="mi" style="color: #099;">301</span><span class="p">),</span> <span class="bp" style="color: #999;">None</span><span class="p">),</span></span>
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10002
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<pre style="margin: 0;">+<span id="LC10002" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">219</span><span class="p">,</span> <span class="mi" style="color: #099;">301</span><span class="p">),</span> <span class="bp" style="color: #999;">None</span><span class="p">),</span></span>
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10003
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<pre style="margin: 0;">+<span id="LC10003" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">219</span><span class="p">,</span> <span class="mi" style="color: #099;">301</span><span class="p">),</span> <span class="bp" style="color: #999;">None</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10004" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10004
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<pre style="margin: 0;">+<span id="LC10004" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">219</span><span class="p">,</span> <span class="mi" style="color: #099;">301</span><span class="p">),</span> <span class="bp" style="color: #999;">None</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10005" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10005
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<pre style="margin: 0;">+<span id="LC10005" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">219</span><span class="p">,</span> <span class="mi" style="color: #099;">301</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">),</span> <span class="bp" style="color: #999;">None</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10006" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10006
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<pre style="margin: 0;">+<span id="LC10006" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">219</span><span class="p">,</span> <span class="mi" style="color: #099;">301</span><span class="p">),</span> <span class="bp" style="color: #999;">None</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10007" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10007
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<pre style="margin: 0;">+<span id="LC10007" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mi" style="color: #099;">219</span><span class="p">,</span> <span class="mi" style="color: #099;">301</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">),</span> <span class="bp" style="color: #999;">None</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10008" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10008
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<pre style="margin: 0;">+<span id="LC10008" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="s" style="color: #d14;">'CSYX'</span><span class="p">),</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10009" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10009
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<pre style="margin: 0;">+<span id="LC10009" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">),</span> <span class="s" style="color: #d14;">'ZCYX'</span><span class="p">),</span></span>
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10010
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<pre style="margin: 0;">+<span id="LC10010" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">219</span><span class="p">,</span> <span class="mi" style="color: #099;">301</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">),</span> <span class="s" style="color: #d14;">'TCZYXS'</span><span class="p">),</span></span>
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10011
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<pre style="margin: 0;">+<span id="LC10011" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">10</span><span class="p">,</span> <span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">200</span><span class="p">,</span> <span class="mi" style="color: #099;">200</span><span class="p">),</span> <span class="s" style="color: #d14;">'EPYX'</span><span class="p">),</span></span>
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10012
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<pre style="margin: 0;">+<span id="LC10012" class="line" lang="python"> <span class="p">((</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">6</span><span class="p">,</span> <span class="mi" style="color: #099;">7</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">),</span> <span class="s" style="color: #d14;">'TQCPZRYXS'</span><span class="p">),</span></span>
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10013
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<pre style="margin: 0;">+<span id="LC10013" class="line" lang="python"> <span class="p">]</span></span>
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10014
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<pre style="margin: 0;">+<span id="LC10014" class="line" lang="python"><span class="p">)</span></span>
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10015
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<pre style="margin: 0;">+<span id="LC10015" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_write_ome</span><span class="p">(</span><span class="n" style="color: #333;">shape</span><span class="p">,</span> <span class="n" style="color: #333;">axes</span><span class="p">):</span></span>
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10016
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<pre style="margin: 0;">+<span id="LC10016" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test write OME-TIFF format."""</span></span>
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10017
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<pre style="margin: 0;">+<span id="LC10017" class="line" lang="python"> <span class="n" style="color: #333;">metadata</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{</span><span class="s" style="color: #d14;">'axes'</span><span class="p">:</span> <span class="n" style="color: #333;">axes</span><span class="p">}</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">axes</span> <span class="ow" style="font-weight: 600;">is</span> <span class="ow" style="font-weight: 600;">not</span> <span class="bp" style="color: #999;">None</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10018" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10018
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<pre style="margin: 0;">+<span id="LC10018" class="line" lang="python"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">random_data</span><span class="p">(</span><span class="s" style="color: #d14;">'uint8'</span><span class="p">,</span> <span class="n" style="color: #333;">shape</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10019" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10019
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<pre style="margin: 0;">+<span id="LC10019" class="line" lang="python"> <span class="n" style="color: #333;">fname</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'write_ome_{}.ome.tif'</span><span class="p">.</span><span class="nb" style="color: #0086b3;">format</span><span class="p">(</span><span class="nb" style="color: #0086b3;">str</span><span class="p">(</span><span class="n" style="color: #333;">shape</span><span class="p">).</span><span class="n" style="color: #333;">replace</span><span class="p">(</span><span class="s" style="color: #d14;">' '</span><span class="p">,</span> <span class="s" style="color: #d14;">''</span><span class="p">))</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10020" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10020
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<pre style="margin: 0;">+<span id="LC10020" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TempFileName</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">fname</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10021" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10021
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<pre style="margin: 0;">+<span id="LC10021" class="line" lang="python"> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">,</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">metadata</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">metadata</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10022" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10022
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<pre style="margin: 0;">+<span id="LC10022" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10023" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10023
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<pre style="margin: 0;">+<span id="LC10023" class="line" lang="python"> <span class="n" style="color: #333;">image</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">()</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10024" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10024
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<pre style="margin: 0;">+<span id="LC10024" class="line" lang="python"> <span class="n" style="color: #333;">omexml</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">ome_metadata</span></span>
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10025
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<pre style="margin: 0;">+<span id="LC10025" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">axes</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10026" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10026
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<pre style="margin: 0;">+<span id="LC10026" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">].</span><span class="n" style="color: #333;">axes</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">squeeze_axes</span><span class="p">(</span><span class="n" style="color: #333;">shape</span><span class="p">,</span> <span class="n" style="color: #333;">axes</span><span class="p">)[</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10027" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10027
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<pre style="margin: 0;">+<span id="LC10027" class="line" lang="python"> <span class="n" style="color: #333;">assert_array_equal</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">squeeze</span><span class="p">(),</span> <span class="n" style="color: #333;">image</span><span class="p">.</span><span class="n" style="color: #333;">squeeze</span><span class="p">())</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10028" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10028
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<pre style="margin: 0;">+<span id="LC10028" class="line" lang="python"> <span class="n" style="color: #333;">assert_valid_omexml</span><span class="p">(</span><span class="n" style="color: #333;">omexml</span><span class="p">)</span></span>
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10029
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<pre style="margin: 0;">+<span id="LC10029" class="line" lang="python"> <span class="n" style="color: #333;">assert_valid</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span></span>
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10030
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<pre style="margin: 0;">+<span id="LC10030" class="line" lang="python"></span>
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10031
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<pre style="margin: 0;">+<span id="LC10031" class="line" lang="python"></span>
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10032
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<pre style="margin: 0;">+<span id="LC10032" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">mark</span><span class="p">.</span><span class="n" style="color: #333;">skipif</span><span class="p">(</span><span class="n" style="color: #333;">SKIP_PUBLIC</span><span class="p">,</span> <span class="n" style="color: #333;">reason</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">REASON</span><span class="p">)</span></span>
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10033
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<pre style="margin: 0;">+<span id="LC10033" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_write_ome_copy</span><span class="p">():</span></span>
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10034
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<pre style="margin: 0;">+<span id="LC10034" class="line" lang="python"> <span class="s" style="color: #d14;">"""Test re-write OME time-series of volumes."""</span></span>
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10035
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<pre style="margin: 0;">+<span id="LC10035" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># 4D (7 time points, 5 focal planes)</span></span>
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10036
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<pre style="margin: 0;">+<span id="LC10036" class="line" lang="python"> <span class="n" style="color: #333;">fname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">public_file</span><span class="p">(</span><span class="s" style="color: #d14;">'OME/bioformats-artificial/4D-series.ome.tiff'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10037" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10037
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<pre style="margin: 0;">+<span id="LC10037" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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10038
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<pre style="margin: 0;">+<span id="LC10038" class="line" lang="python"> <span class="n" style="color: #333;">omexml</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">ome_metadata</span></span>
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10039
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<pre style="margin: 0;">+<span id="LC10039" class="line" lang="python"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">()</span></span>
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10040
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<pre style="margin: 0;">+<span id="LC10040" class="line" lang="python"></span>
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10041
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<pre style="margin: 0;">+<span id="LC10041" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TempFileName</span><span class="p">(</span><span class="s" style="color: #d14;">'ome_copy'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">fname</span><span class="p">:</span></span>
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10042
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<pre style="margin: 0;">+<span id="LC10042" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># process OME-XML</span></span>
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10043
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<pre style="margin: 0;">+<span id="LC10043" class="line" lang="python"> <span class="n" style="color: #333;">omexml</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">omexml</span><span class="p">.</span><span class="n" style="color: #333;">replace</span><span class="p">(</span><span class="s" style="color: #d14;">'4D-series.ome.tiff'</span><span class="p">,</span> <span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">path</span><span class="p">.</span><span class="n" style="color: #333;">split</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)[</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">])</span></span>
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10044
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<pre style="margin: 0;">+<span id="LC10044" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># omexml = omexml.replace('BigEndian="true"', 'BigEndian="false"')</span></span>
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10045
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<pre style="margin: 0;">+<span id="LC10045" class="line" lang="python"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">newbyteorder</span><span class="p">(</span><span class="s" style="color: #d14;">'>'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10046" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10046
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<pre style="margin: 0;">+<span id="LC10046" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># save image planes in the order referenced in the OME-XML</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10047" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10047
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<pre style="margin: 0;">+<span id="LC10047" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># make sure storage options (compression, byteorder, photometric mode)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10048" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10048
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<pre style="margin: 0;">+<span id="LC10048" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># match OME-XML</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10049" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10049
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<pre style="margin: 0;">+<span id="LC10049" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># write OME-XML to first page only</span></span>
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10050
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<pre style="margin: 0;">+<span id="LC10050" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">,</span> <span class="n" style="color: #333;">bigtiff</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span> <span class="n" style="color: #333;">byteorder</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'>'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10051" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10051
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<pre style="margin: 0;">+<span id="LC10051" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">i</span><span class="p">,</span> <span class="n" style="color: #333;">image</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">enumerate</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">reshape</span><span class="p">(</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">shape</span><span class="p">[</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">2</span><span class="p">:])):</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10052" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10052
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<pre style="margin: 0;">+<span id="LC10052" class="line" lang="python"> <span class="n" style="color: #333;">description</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">omexml</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">0</span> <span class="k" style="font-weight: 600;">else</span> <span class="bp" style="color: #999;">None</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10053" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10053
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<pre style="margin: 0;">+<span id="LC10053" class="line" lang="python"> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">image</span><span class="p">,</span> <span class="n" style="color: #333;">description</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">description</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10054" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10054
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<pre style="margin: 0;">+<span id="LC10054" class="line" lang="python"> <span class="n" style="color: #333;">photometric</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'minisblack'</span><span class="p">,</span> <span class="n" style="color: #333;">metadata</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10055" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10055
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<pre style="margin: 0;">+<span id="LC10055" class="line" lang="python"> <span class="n" style="color: #333;">contiguous</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10056" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10056
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<pre style="margin: 0;">+<span id="LC10056" class="line" lang="python"></span>
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<td class="diff-line-num new new_line" data-linenumber="10057" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10057
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<pre style="margin: 0;">+<span id="LC10057" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="n" style="color: #333;">fname</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10058" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10058
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<pre style="margin: 0;">+<span id="LC10058" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">is_ome</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="10059" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10059
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<pre style="margin: 0;">+<span id="LC10059" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">byteorder</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'>'</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="10060" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10060
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<pre style="margin: 0;">+<span id="LC10060" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">35</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="10061" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10061
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<pre style="margin: 0;">+<span id="LC10061" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="10062" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10062
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<pre style="margin: 0;">+<span id="LC10062" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># assert page properties</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10063" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10063
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<pre style="margin: 0;">+<span id="LC10063" class="line" lang="python"> <span class="n" style="color: #333;">page</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10064" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10064
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<pre style="margin: 0;">+<span id="LC10064" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">is_contiguous</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10065" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10065
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<pre style="margin: 0;">+<span id="LC10065" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">compression</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">NONE</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="10066" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10066
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<pre style="margin: 0;">+<span id="LC10066" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">imagewidth</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">439</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="10067" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10067
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<pre style="margin: 0;">+<span id="LC10067" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">imagelength</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">167</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="10068" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10068
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<pre style="margin: 0;">+<span id="LC10068" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">bitspersample</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">8</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="10069" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10069
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<pre style="margin: 0;">+<span id="LC10069" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">samplesperpixel</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span></span>
</pre>
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<pre style="margin: 0;">+<span id="LC10070" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># assert series properties</span></span>
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10071
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<pre style="margin: 0;">+<span id="LC10071" class="line" lang="python"> <span class="n" style="color: #333;">series</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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10072
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<pre style="margin: 0;">+<span id="LC10072" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">7</span><span class="p">,</span> <span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">167</span><span class="p">,</span> <span class="mi" style="color: #099;">439</span><span class="p">)</span></span>
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10073
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<pre style="margin: 0;">+<span id="LC10073" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">dtype</span><span class="p">.</span><span class="n" style="color: #333;">name</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'int8'</span></span>
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10074
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<pre style="margin: 0;">+<span id="LC10074" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">axes</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'TZYX'</span></span>
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10075
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<pre style="margin: 0;">+<span id="LC10075" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># assert data</span></span>
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10076
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<pre style="margin: 0;">+<span id="LC10076" class="line" lang="python"> <span class="n" style="color: #333;">assert_array_equal</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">())</span></span>
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10077
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<pre style="margin: 0;">+<span id="LC10077" class="line" lang="python"> <span class="n" style="color: #333;">assert__str__</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC10078" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC10079" class="line" lang="python"></span>
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10080
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<pre style="margin: 0;"> <span id="LC10080" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">###############################################################################</span></span>
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10081
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<pre style="margin: 0;"> <span id="LC10081" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC10082" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># Test embedded TIFF files</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="9509" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9509,7 +10173,7 @@ def assert_embed_micromanager(tif):</td>
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<pre style="margin: 0;"> <span id="LC10173" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span></span>
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9510
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10174
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<pre style="margin: 0;"> <span id="LC10174" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># assert non-tiff micromanager_metadata</span></span>
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9511
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10175
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<pre style="margin: 0;"> <span id="LC10175" class="line" lang="python"> <span class="n" style="color: #333;">tags</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">micromanager_metadata</span><span class="p">[</span><span class="s" style="color: #d14;">'Summary'</span><span class="p">]</span></span>
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<pre style="margin: 0;">-<span id="LC9512" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">tags</span><span class="p">[</span><span class="s" style="color: #d14;">"MicroManagerVersion"</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;"><span class="idiff left right">"1.4.x dev"</span></span></span>
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10176
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<pre style="margin: 0;">+<span id="LC10176" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">tags</span><span class="p">[</span><span class="s" style="color: #d14;">"MicroManagerVersion"</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;"><span class="idiff left right">'1.4.x dev'</span></span></span>
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10177
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<pre style="margin: 0;"> <span id="LC10177" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># assert page properties</span></span>
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10178
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<pre style="margin: 0;"> <span id="LC10178" class="line" lang="python"> <span class="n" style="color: #333;">page</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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9515
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10179
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<pre style="margin: 0;"> <span id="LC10179" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">is_contiguous</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="10191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9527,8 +10191,8 @@ def assert_embed_micromanager(tif):</td>
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9527
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<td class="diff-line-num new_line" data-linenumber="10191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10191
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<pre style="margin: 0;"> <span id="LC10191" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">tags</span><span class="p">[</span><span class="s" style="color: #d14;">'slices'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">3</span></span>
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<td class="diff-line-num old_line" data-linenumber="9528" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9528
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<td class="diff-line-num new_line" data-linenumber="10192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10192
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<pre style="margin: 0;"> <span id="LC10192" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">tags</span><span class="p">[</span><span class="s" style="color: #d14;">'Ranges'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mf" style="color: #099;">706.0</span><span class="p">,</span> <span class="mf" style="color: #099;">5846.0</span><span class="p">)</span></span>
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9529
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<td class="diff-line-num new_line" data-linenumber="10193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10193
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<pre style="margin: 0;"> <span id="LC10193" class="line" lang="python"> <span class="n" style="color: #333;">tags</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">micromanager_metadata</span></span>
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9530
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<td class="diff-line-num new_line old" data-linenumber="10194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9530" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">tags</span><span class="p">[</span><span class="s" style="color: #d14;">"FileName"</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;"><span class="idiff left right">"Untitled_1_MMStack.ome.tif"</span></span></span>
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9531
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<td class="diff-line-num new_line old" data-linenumber="10194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9531" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">tags</span><span class="p">[</span><span class="s" style="color: #d14;">"PixelType"</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;"><span class="idiff left right">"GRAY16"</span></span></span>
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<td class="diff-line-num new new_line" data-linenumber="10194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10194
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<pre style="margin: 0;">+<span id="LC10194" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">tags</span><span class="p">[</span><span class="s" style="color: #d14;">"FileName"</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;"><span class="idiff left right">'Untitled_1_MMStack.ome.tif'</span></span></span>
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<td class="diff-line-num new new_line" data-linenumber="10195" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10195
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<pre style="margin: 0;">+<span id="LC10195" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">tags</span><span class="p">[</span><span class="s" style="color: #d14;">"PixelType"</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;"><span class="idiff left right">'GRAY16'</span></span></span>
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9532
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10196
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<pre style="margin: 0;"> <span id="LC10196" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># assert series properties</span></span>
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9533
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10197
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<pre style="margin: 0;"> <span id="LC10197" class="line" lang="python"> <span class="n" style="color: #333;">series</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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9534
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<td class="diff-line-num new_line" data-linenumber="10198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10198
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<pre style="margin: 0;"> <span id="LC10198" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">series</span><span class="p">.</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mi" style="color: #099;">512</span><span class="p">,</span> <span class="mi" style="color: #099;">512</span><span class="p">)</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="9773" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="10437" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9773,14 +10437,15 @@ def test_depend_lfdfiles():</td>
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9773
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10437
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<pre style="margin: 0;"> <span id="LC10437" class="line" lang="python"></span>
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9774
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<td class="diff-line-num new_line" data-linenumber="10438" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10438
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<pre style="margin: 0;"> <span id="LC10438" class="line" lang="python"> <span class="n" style="color: #333;">filename</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">private_file</span><span class="p">(</span><span class="s" style="color: #d14;">'SimFCS/simfcs.Z64'</span><span class="p">)</span></span>
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9775
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<td class="diff-line-num new_line" data-linenumber="10439" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10439
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<pre style="margin: 0;"> <span id="LC10439" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TempFileName</span><span class="p">(</span><span class="s" style="color: #d14;">'simfcsz_z64'</span><span class="p">,</span> <span class="n" style="color: #333;">ext</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'.tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">outfile</span><span class="p">:</span></span>
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9776
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<td class="diff-line-num new_line old" data-linenumber="10440" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9776" class="line" lang="python"> <span class="n" style="color: #333;">z64</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">SimfcsZ64</span><span class="p">(</span><span class="n" style="color: #333;">filename</span><span class="p">)</span></span>
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9777
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<td class="diff-line-num new_line old" data-linenumber="10440" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9777" class="line" lang="python"> <span class="n" style="color: #333;">z64</span><span class="p">.</span><span class="n" style="color: #333;">totiff</span><span class="p">(</span><span class="n" style="color: #333;">outfile</span><span class="p">)</span></span>
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<td class="diff-line-num new old_line" data-linenumber="9778" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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10440
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<pre style="margin: 0;">+<span id="LC10440" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">SimfcsZ64</span><span class="p">(</span><span class="n" style="color: #333;">filename</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">z64</span><span class="p">:</span></span>
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10441
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<pre style="margin: 0;">+<span id="LC10441" class="line" lang="python"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">z64</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">()</span></span>
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10442
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<pre style="margin: 0;">+<span id="LC10442" class="line" lang="python"> <span class="n" style="color: #333;">z64</span><span class="p">.</span><span class="n" style="color: #333;">totiff</span><span class="p">(</span><span class="n" style="color: #333;">outfile</span><span class="p">)</span></span>
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9778
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10443
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<pre style="margin: 0;"> <span id="LC10443" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="n" style="color: #333;">outfile</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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9779
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<td class="diff-line-num new_line" data-linenumber="10444" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10444
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<pre style="margin: 0;"> <span id="LC10444" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">256</span></span>
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<td class="diff-line-num old_line" data-linenumber="9780" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9780
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<td class="diff-line-num new_line" data-linenumber="10445" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10445
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<pre style="margin: 0;"> <span id="LC10445" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span></span>
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9781
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10446
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<pre style="margin: 0;"> <span id="LC10446" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">].</span><span class="n" style="color: #333;">shape</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="mi" style="color: #099;">256</span><span class="p">,</span> <span class="mi" style="color: #099;">256</span><span class="p">,</span> <span class="mi" style="color: #099;">256</span><span class="p">)</span></span>
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9782
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<td class="diff-line-num new_line" data-linenumber="10447" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10447
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<pre style="margin: 0;"> <span id="LC10447" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">].</span><span class="n" style="color: #333;">dtype</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'float32'</span></span>
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9783
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<pre style="margin: 0;">-<span id="LC9783" class="line" lang="python"> <span class="n" style="color: #333;">assert_array_equal</span><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">z64</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">asarray</span></span><span class="p"><span class="idiff right">()</span>,</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">())</span></span>
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10448
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<pre style="margin: 0;">+<span id="LC10448" class="line" lang="python"> <span class="n" style="color: #333;">assert_array_equal</span><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left right">data</span></span><span class="p">,</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">())</span></span>
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9784
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10449
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<pre style="margin: 0;"> <span id="LC10449" class="line" lang="python"></span>
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9785
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10450
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<pre style="margin: 0;"> <span id="LC10450" class="line" lang="python"></span>
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9786
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10451
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<pre style="margin: 0;"> <span id="LC10451" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">mark</span><span class="p">.</span><span class="n" style="color: #333;">skipif</span><span class="p">(</span><span class="n" style="color: #333;">SKIP_PRIVATE</span><span class="p">,</span> <span class="n" style="color: #333;">reason</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">REASON</span><span class="p">)</span></span>
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<li id="624d16e4d51d3d7766973c48f57be57a653d8843">
<a href="https://salsa.debian.org/python-team/modules/tifffile/-/commit/2a5bc8b5fe528ce2d93f5d400258cbe8f2088e3a#624d16e4d51d3d7766973c48f57be57a653d8843"><strong>tifffile.egg-info/PKG-INFO</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">Metadata</span><span class="p">-</span><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">2.1</span></span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="mosel"><span class="n" style="color: #333;">Name</span><span class="p">:</span> <span class="n" style="color: #333;">tifffile</span></span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="mosel"><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">2020.<span class="idiff left right">6.3</span></span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="mosel"><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">2020.<span class="idiff left right">7.17</span></span></span>
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4
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="mosel"><span class="n" style="color: #333;">Summary</span><span class="p">:</span> <span class="n" style="color: #333;">Read</span> <span class="k" style="font-weight: 600;">and</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">TIFF</span><span class="p">(</span><span class="n" style="color: #333;">r</span><span class="p">)</span> <span class="n" style="color: #333;">files</span></span>
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5
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="mosel"><span class="n" style="color: #333;">Home</span><span class="p">-</span><span class="n" style="color: #333;">page</span><span class="p">:</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">lfd</span><span class="p">.</span><span class="n" style="color: #333;">uci</span><span class="p">.</span><span class="n" style="color: #333;">edu</span><span class="p">/~</span><span class="n" style="color: #333;">gohlke</span><span class="p">/</span></span>
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6
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="mosel"><span class="n" style="color: #333;">Author</span><span class="p">:</span> <span class="n" style="color: #333;">Christoph</span> <span class="n" style="color: #333;">Gohlke</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -18,10 +18,11 @@ Description: Read and write TIFF(r) files</td>
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18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="mosel"> </span>
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<td class="diff-line-num old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
19
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19
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="mosel"> <span class="n" style="color: #333;">Image</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="nb" style="color: #0086b3;">read</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">TIFF</span><span class="p">,</span> <span class="n" style="color: #333;">BigTIFF</span><span class="p">,</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span><span class="p">,</span> <span class="n" style="color: #333;">STK</span><span class="p">,</span> <span class="n" style="color: #333;">LSM</span><span class="p">,</span> <span class="n" style="color: #333;">SGI</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="mosel"> <span class="n" style="color: #333;">NIHImage</span><span class="p">,</span> <span class="n" style="color: #333;">ImageJ</span><span class="p">,</span> <span class="n" style="color: #333;">MicroManager</span><span class="p">,</span> <span class="n" style="color: #333;">FluoView</span><span class="p">,</span> <span class="n" style="color: #333;">ScanImage</span><span class="p">,</span> <span class="n" style="color: #333;">SEQ</span><span class="p">,</span> <span class="n" style="color: #333;">GEL</span><span class="p">,</span> <span class="n" style="color: #333;">SVS</span><span class="p">,</span> <span class="n" style="color: #333;">SCN</span><span class="p">,</span> <span class="n" style="color: #333;">SIS</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="mosel"> <span class="n" style="color: #333;">ZIF</span><span class="p"><span class="idiff left">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">QPTIFF</span></span><span class="p">,</span> <span class="n" style="color: #333;">NDPI</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">GeoTIFF</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="mosel"> <span class="n" style="color: #333;">ZIF</span><span class="idiff left"> </span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">Zoomable</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">Image</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">File</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">Format</span></span><span class="p"><span class="idiff">),</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">QPTIFF</span></span><span class="idiff"> </span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">QPI</span></span><span class="p"><span class="idiff right">)</span>,</span> <span class="n" style="color: #333;">NDPI</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">GeoTIFF</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="mosel"> </span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="mosel"> <span class="n" style="color: #333;">Numpy</span> <span class="n" style="color: #333;">arrays</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">written</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">TIFF</span><span class="p">,</span> <span class="n" style="color: #333;">BigTIFF</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">ImageJ</span> <span class="n" style="color: #333;">hyperstack</span> <span class="n" style="color: #333;">compatible</span></span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="mosel"> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">page</span><span class="p">,</span> <span class="n" style="color: #333;">memory</span><span class="p">-</span><span class="n" style="color: #333;">mappable</span><span class="p">,</span> <span class="n" style="color: #333;">tiled</span><span class="p">,</span> <span class="n" style="color: #333;">predicted</span><span class="p">,</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">form</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="mosel"> <span class="n" style="color: #333;">Numpy</span> <span class="n" style="color: #333;">arrays</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">written</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">TIFF</span><span class="p">,</span> <span class="n" style="color: #333;">BigTIFF</span><span class="p">,</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">ImageJ</span> <span class="n" style="color: #333;">hyperstack</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="mosel"> <span class="n" style="color: #333;">compatible</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">page</span><span class="p">,</span> <span class="n" style="color: #333;">memory</span><span class="p">-</span><span class="n" style="color: #333;">mappable</span><span class="p">,</span> <span class="n" style="color: #333;">tiled</span><span class="p">,</span> <span class="n" style="color: #333;">predicted</span><span class="p">,</span> <span class="k" style="font-weight: 600;">or</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="mosel"> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">form</span><span class="p">.</span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="mosel"> </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="mosel"> <span class="n" style="color: #333;">A</span> <span class="n" style="color: #333;">subset</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">specification</span> <span class="n" style="color: #333;">is</span> <span class="n" style="color: #333;">supported</span><span class="p">,</span> <span class="n" style="color: #333;">mainly</span> <span class="n" style="color: #333;">uncompressed</span> <span class="k" style="font-weight: 600;">and</span></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="mosel"> <span class="n" style="color: #333;">losslessly</span> <span class="n" style="color: #333;">compressed</span> <span class="m" style="color: #099;">8</span><span class="p">,</span> <span class="m" style="color: #099;">16</span><span class="p">,</span> <span class="m" style="color: #099;">32</span> <span class="k" style="font-weight: 600;">and</span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="k" style="font-weight: 600;">integer</span><span class="p">,</span> <span class="m" style="color: #099;">16</span><span class="p">,</span> <span class="m" style="color: #099;">32</span> <span class="k" style="font-weight: 600;">and</span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">float</span><span class="p">,</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -36,7 +37,7 @@ Description: Read and write TIFF(r) files</td>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="mosel"> <span class="n" style="color: #333;">extensions</span> <span class="n" style="color: #333;">defined</span> <span class="n" style="color: #333;">by</span> <span class="n" style="color: #333;">Molecular</span> <span class="n" style="color: #333;">Devices</span> <span class="p">(</span><span class="n" style="color: #333;">Universal</span> <span class="n" style="color: #333;">Imaging</span> <span class="n" style="color: #333;">Corporation</span><span class="p">),</span></span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="mosel"> <span class="n" style="color: #333;">Carl</span> <span class="n" style="color: #333;">Zeiss</span> <span class="n" style="color: #333;">MicroImaging</span><span class="p">,</span> <span class="n" style="color: #333;">Olympus</span><span class="p">,</span> <span class="n" style="color: #333;">Silicon</span> <span class="n" style="color: #333;">Graphics</span> <span class="n" style="color: #333;">International</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="mosel"> <span class="n" style="color: #333;">Media</span> <span class="n" style="color: #333;">Cybernetics</span><span class="p">,</span> <span class="n" style="color: #333;">Molecular</span> <span class="n" style="color: #333;">Dynamics</span><span class="p">,</span> <span class="n" style="color: #333;">PerkinElmer</span><span class="p">,</span> <span class="n" style="color: #333;">Hamamatsu</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">the</span></span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="mosel"> <span class="n" style="color: #333;">Open</span> <span class="n" style="color: #333;">Microscopy</span> <span class="n" style="color: #333;">Environment</span> <span class="n" style="color: #333;">consortium</span> <span class="n" style="color: #333;">respectively</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="mosel"> <span class="n" style="color: #333;">Open</span> <span class="n" style="color: #333;">Microscopy</span> <span class="n" style="color: #333;">Environment</span> <span class="n" style="color: #333;">consortium</span><span class="p"><span class="idiff left right">,</span></span> <span class="n" style="color: #333;">respectively</span><span class="p">.</span></span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="mosel"> </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="mosel"> <span class="n" style="color: #333;">For</span> <span class="nf" style="color: #900; font-weight: 600;">command</span> <span class="n" style="color: #333;">line</span> <span class="n" style="color: #333;">usage</span> <span class="nf" style="color: #900; font-weight: 600;">run</span> <span class="p">``</span><span class="n" style="color: #333;">python</span> <span class="p">-</span><span class="n" style="color: #333;">m</span> <span class="n" style="color: #333;">tifffile</span> <span class="p">--</span><span class="n" style="color: #333;">help</span><span class="p">``</span></span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="mosel"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -48,23 +49,44 @@ Description: Read and write TIFF(r) files</td>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="mosel"> </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="mosel"> <span class="p">:</span><span class="n" style="color: #333;">License</span><span class="p">:</span> <span class="n" style="color: #333;">BSD</span> <span class="m" style="color: #099;">3</span><span class="p">-</span><span class="n" style="color: #333;">Clause</span></span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="mosel"> </span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="mosel"> <span class="p">:</span><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">2020.<span class="idiff left right">6.3</span></span></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="mosel"> <span class="p">:</span><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">2020.<span class="idiff left right">7.17</span></span></span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="mosel"> </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Requirements</span></span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="mosel"> <span class="p">------------</span></span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="mosel"> <span class="n" style="color: #333;">This</span> <span class="n" style="color: #333;">release</span> <span class="n" style="color: #333;">has</span> <span class="n" style="color: #333;">been</span> <span class="n" style="color: #333;">tested</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">following</span> <span class="k" style="font-weight: 600;">requirements</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">dependencies</span></span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="mosel"> <span class="p">(</span><span class="n" style="color: #333;">other</span> <span class="n" style="color: #333;">versions</span> <span class="n" style="color: #333;">may</span> <span class="n" style="color: #333;">work</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="mosel"> </span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">CPython</span> <span class="m" style="color: #099;">3.<span class="idiff left">6.8</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">3.7.7</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff right">3.8.3</span></span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">python</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Numpy</span> <span class="m" style="color: #099;">1.1<span class="idiff left">6.6</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">1.18.4</span></span><span class="idiff"> </span><span class="p"><span class="idiff"><</span></span><span class="n" style="color: #333;"><span class="idiff">https</span></span><span class="p"><span class="idiff">://</span></span><span class="n" style="color: #333;"><span class="idiff">www</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">numpy</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff right">org</span></span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">CPython</span> <span class="m" style="color: #099;">3.<span class="idiff left">7.8</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">3.8.4</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">3.9.0</span></span><span class="n" style="color: #333;"><span class="idiff right">b4</span></span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">python</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Numpy</span> <span class="m" style="color: #099;">1.1<span class="idiff left">8.5</span></span><span class="idiff"> </span><span class="p"><span class="idiff"><</span></span><span class="n" style="color: #333;"><span class="idiff">https</span></span><span class="p"><span class="idiff">://</span></span><span class="n" style="color: #333;"><span class="idiff">pypi</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">org</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">project</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">numpy</span></span><span class="p"><span class="idiff right">/</span>>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Imagecodecs</span> <span class="m" style="color: #099;">2020.5.30</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">imagecodecs</span><span class="p">/>`</span><span class="n" style="color: #333;">_</span></span>
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61
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62
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="mosel"> <span class="p">(</span><span class="n" style="color: #333;">required</span> <span class="n" style="color: #333;">only</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">encoding</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">decoding</span> <span class="n" style="color: #333;">LZW</span><span class="p">,</span> <span class="n" style="color: #333;">JPEG</span><span class="p">,</span> <span class="n" style="color: #333;">etc</span><span class="p">.)</span></span>
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62
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Matplotlib</span> <span class="m" style="color: #099;">3.1</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">matplotlib</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">>`</span><span class="n" style="color: #333;">_</span> <span class="p">(</span><span class="n" style="color: #333;">required</span> <span class="n" style="color: #333;">only</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">plotting</span><span class="p">)</span></span>
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63
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Matplotlib</span> <span class="m" style="color: #099;">3.2.2</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">matplotlib</span><span class="p">/>`</span><span class="n" style="color: #333;">_</span></span>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="mosel"> <span class="p">(</span><span class="n" style="color: #333;">required</span> <span class="n" style="color: #333;">only</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">plotting</span><span class="p">)</span></span>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Lxml</span> <span class="m" style="color: #099;">4.5.2</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">github</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">lxml</span><span class="p">/</span><span class="n" style="color: #333;">lxml</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="mosel"> <span class="p">(</span><span class="n" style="color: #333;">required</span> <span class="n" style="color: #333;">only</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">validating</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">printing</span> <span class="n" style="color: #333;">XML</span><span class="p">)</span></span>
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63
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67
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="mosel"> </span>
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64
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68
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="mosel"> <span class="n" style="color: #333;">Revisions</span></span>
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65
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69
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="mosel"> <span class="p">---------</span></span>
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70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.7.17</span></span>
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<td class="diff-line-num new new_line" data-linenumber="71" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="mosel"> <span class="n" style="color: #333;">Pass</span> <span class="m" style="color: #099;">3022</span> <span class="n" style="color: #333;">tests</span><span class="p">.</span></span>
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72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="mosel"> <span class="n" style="color: #333;">Initial</span> <span class="n" style="color: #333;">support</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num new old_line" data-linenumber="66" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="73" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="mosel"> <span class="n" style="color: #333;">Return</span> <span class="n" style="color: #333;">samples</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">separate</span> <span class="n" style="color: #333;">dimension</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">OME</span> <span class="n" style="color: #333;">series</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="74" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">modulo</span> <span class="n" style="color: #333;">dimensions</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">multiple</span> <span class="n" style="color: #333;">OME</span> <span class="n" style="color: #333;">series</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="75" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">some</span> <span class="n" style="color: #333;">test</span> <span class="n" style="color: #333;">errors</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">big</span> <span class="n" style="color: #333;">endian</span> <span class="n" style="color: #333;">systems</span> <span class="p">(#</span><span class="m" style="color: #099;">18</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="76" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">BytesWarning</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="77" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">pass</span> <span class="n" style="color: #333;">TIFF</span><span class="p">.</span><span class="n" style="color: #333;">PREDICTOR</span> <span class="n" style="color: #333;">values</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">.</span></span>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.7.4</span></span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="mosel"> <span class="n" style="color: #333;">Deprecate</span> <span class="n" style="color: #333;">support</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">Python</span> <span class="m" style="color: #099;">3.6</span> <span class="p">(</span><span class="n" style="color: #333;">NEP</span> <span class="m" style="color: #099;">29</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="80" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="mosel"> <span class="n" style="color: #333;">Move</span> <span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">subresolution</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">TiffPageSeries</span><span class="p">.</span><span class="n" style="color: #333;">levels</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="mosel"> <span class="n" style="color: #333;">Add</span> <span class="n" style="color: #333;">parser</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">SVS</span><span class="p">,</span> <span class="n" style="color: #333;">SCN</span><span class="p">,</span> <span class="n" style="color: #333;">NDPI</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">QPI</span> <span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">series</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="82" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="mosel"> <span class="n" style="color: #333;">Read</span> <span class="n" style="color: #333;">single</span><span class="p">-</span><span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">pyramids</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="83" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="mosel"> <span class="n" style="color: #333;">Read</span> <span class="n" style="color: #333;">NDPI</span> <span class="n" style="color: #333;">files</span> <span class="p">></span> <span class="m" style="color: #099;">4</span> <span class="n" style="color: #333;">GB</span> <span class="p">(#</span><span class="m" style="color: #099;">15</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="84" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Include</span> <span class="n" style="color: #333;">SubIFDs</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">generic</span> <span class="n" style="color: #333;">series</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="85" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="mosel"> <span class="n" style="color: #333;">Preliminary</span> <span class="n" style="color: #333;">support</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">packed</span> <span class="k" style="font-weight: 600;">integer</span> <span class="n" style="color: #333;">arrays</span> <span class="p">(#</span><span class="m" style="color: #099;">11</span><span class="p">,</span> <span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="mosel"> <span class="n" style="color: #333;">Read</span> <span class="n" style="color: #333;">more</span> <span class="n" style="color: #333;">LSM</span> <span class="n" style="color: #333;">info</span> <span class="n" style="color: #333;">subrecords</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="87" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">missing</span> <span class="n" style="color: #333;">ReferenceBlackWhite</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">YCbCr</span> <span class="n" style="color: #333;">photometrics</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="88" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">reading</span> <span class="n" style="color: #333;">lossless</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">DNG</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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66
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89
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.6.3</span></span>
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67
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="mosel"> <span class="n" style="color: #333;">Pass</span> <span class="m" style="color: #099;">2908</span> <span class="n" style="color: #333;">tests</span><span class="p">.</span></span>
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68
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90
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="mosel"> <span class="n" style="color: #333;">Support</span> <span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">PathLike</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">names</span> <span class="p">(#</span><span class="m" style="color: #099;">9</span><span class="p">).</span></span>
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69
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91
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.5.30</span></span>
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70
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<td class="diff-line-num new_line" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
92
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="mosel"> <span class="n" style="color: #333;">Re</span><span class="p">-</span><span class="n" style="color: #333;">add</span> <span class="n" style="color: #333;">pure</span> <span class="n" style="color: #333;">Python</span> <span class="n" style="color: #333;">PackBits</span> <span class="n" style="color: #333;">decoder</span><span class="p">.</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="218" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="240" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -218,10 +240,11 @@ Description: Read and write TIFF(r) files</td>
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218
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240
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="mosel"> </span>
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219
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<td class="diff-line-num new_line" data-linenumber="241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
241
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<pre style="margin: 0;"> <span id="LC241" class="line" lang="mosel"> <span class="n" style="color: #333;">Tested</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">little</span><span class="p">-</span><span class="n" style="color: #333;">endian</span> <span class="n" style="color: #333;">platforms</span> <span class="n" style="color: #333;">only</span><span class="p">.</span></span>
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220
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242
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<pre style="margin: 0;"> <span id="LC242" class="line" lang="mosel"> </span>
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<td class="diff-line-num old old_line" data-linenumber="221" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
221
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<td class="diff-line-num new_line old" data-linenumber="243" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC221" class="line" lang="mosel"> <span class="n" style="color: #333;">Python</span> <span class="m" style="color: #099;">32</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">versions</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">deprecated</span><span class="p">.</span></span>
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243
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<pre style="margin: 0;">+<span id="LC243" class="line" lang="mosel"> <span class="n" style="color: #333;">Python</span> <span class="m" style="color: #099;">32</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">versions</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">deprecated</span><span class="p">.</span><span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff">Python</span></span><span class="idiff"> </span><span class="p"><span class="idiff"><=</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">3.6</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">are</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">no</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">longer</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">supported</span></span><span class="p"><span class="idiff right">.</span></span></span>
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222
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244
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="mosel"> </span>
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223
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<td class="diff-line-num new_line" data-linenumber="245" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
245
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="mosel"> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">relies</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">the</span> <span class="p">`</span><span class="n" style="color: #333;">imagecodecs</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">imagecodecs</span><span class="p">/>`</span><span class="n" style="color: #333;">_</span></span>
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224
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<td class="diff-line-num new_line old" data-linenumber="246" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC224" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">encoding</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">decoding</span> <span class="n" style="color: #333;">LZW</span><span class="p">,</span> <span class="n" style="color: #333;">JPEG</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">other</span> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">images</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="246" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
246
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<pre style="margin: 0;">+<span id="LC246" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">encoding</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">decoding</span> <span class="n" style="color: #333;">LZW</span><span class="p">,</span> <span class="n" style="color: #333;">JPEG</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">other</span> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">image</span></span>
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<td class="diff-line-num new new_line" data-linenumber="247" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
247
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<pre style="margin: 0;">+<span id="LC247" class="line" lang="mosel"> <span class="n" style="color: #333;">segments</span><span class="p">.</span></span>
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225
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248
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<pre style="margin: 0;"> <span id="LC248" class="line" lang="mosel"> </span>
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226
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<td class="diff-line-num new_line" data-linenumber="249" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
249
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="mosel"> <span class="n" style="color: #333;">Several</span> <span class="n" style="color: #333;">TIFF</span><span class="p">-</span><span class="n" style="color: #333;">like</span> <span class="n" style="color: #333;">formats</span> <span class="k" style="font-weight: 600;">do</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">strictly</span> <span class="n" style="color: #333;">adhere</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">TIFF6</span> <span class="n" style="color: #333;">specification</span><span class="p">,</span></span>
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227
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250
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<pre style="margin: 0;"> <span id="LC250" class="line" lang="mosel"> <span class="n" style="color: #333;">some</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">which</span> <span class="n" style="color: #333;">allow</span> <span class="n" style="color: #333;">file</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">data</span> <span class="n" style="color: #333;">sizes</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">exceed</span> <span class="n" style="color: #333;">the</span> <span class="m" style="color: #099;">4</span> <span class="n" style="color: #333;">GB</span> <span class="n" style="color: #333;">limit</span><span class="p">:</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="238" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="261" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -238,21 +261,23 @@ Description: Read and write TIFF(r) files</td>
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238
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<td class="diff-line-num new_line" data-linenumber="261" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
261
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<pre style="margin: 0;"> <span id="LC261" class="line" lang="mosel"> <span class="n" style="color: #333;">files</span><span class="p">.</span> <span class="n" style="color: #333;">The</span> <span class="m" style="color: #099;">8</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">UTF</span><span class="p">-</span><span class="m" style="color: #099;">8</span> <span class="n" style="color: #333;">encoded</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">XML</span> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">found</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">ImageDescription</span></span>
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<td class="diff-line-num old_line" data-linenumber="239" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
239
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<td class="diff-line-num new_line" data-linenumber="262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
262
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<pre style="margin: 0;"> <span id="LC262" class="line" lang="mosel"> <span class="n" style="color: #333;">tag</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">first</span> <span class="n" style="color: #333;">IFD</span> <span class="n" style="color: #333;">defines</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">position</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">IFDs</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">high</span></span>
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<td class="diff-line-num old_line" data-linenumber="240" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
240
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<td class="diff-line-num new_line" data-linenumber="263" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
263
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<pre style="margin: 0;"> <span id="LC263" class="line" lang="mosel"> <span class="n" style="color: #333;">dimensional</span> <span class="n" style="color: #333;">data</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">files</span><span class="p">,</span> <span class="n" style="color: #333;">except</span> <span class="n" style="color: #333;">when</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">XML</span></span>
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241
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<td class="diff-line-num new_line old" data-linenumber="264" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC241" class="line" lang="mosel"> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">stored</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">separate</span> <span class="n" style="color: #333;">file</span><span class="p">.</span></span>
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<td class="diff-line-num new old_line" data-linenumber="242" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="264" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
264
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<pre style="margin: 0;">+<span id="LC264" class="line" lang="mosel"> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">stored</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">separate</span> <span class="n" style="color: #333;">file</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">numpy</span> <span class="n" style="color: #333;">arrays</span></span>
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<td class="diff-line-num new old_line" data-linenumber="242" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="265" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
265
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<pre style="margin: 0;">+<span id="LC265" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">single</span><span class="p">-</span><span class="n" style="color: #333;">file</span><span class="p">,</span> <span class="n" style="color: #333;">non</span><span class="p">-</span><span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span><span class="p">.</span></span>
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242
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<td class="diff-line-num new_line" data-linenumber="266" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
266
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<pre style="margin: 0;"> <span id="LC266" class="line" lang="mosel"> <span class="p">*</span> <span class="p">*</span><span class="n" style="color: #333;">LSM</span><span class="p">*</span> <span class="n" style="color: #333;">stores</span> <span class="n" style="color: #333;">all</span> <span class="n" style="color: #333;">IFDs</span> <span class="n" style="color: #333;">below</span> <span class="m" style="color: #099;">4</span> <span class="n" style="color: #333;">GB</span> <span class="n" style="color: #333;">but</span> <span class="n" style="color: #333;">wraps</span> <span class="n" style="color: #333;">around</span> <span class="m" style="color: #099;">32</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">StripOffsets</span><span class="p">.</span></span>
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243
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<td class="diff-line-num new_line" data-linenumber="267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
267
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<pre style="margin: 0;"> <span id="LC267" class="line" lang="mosel"> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">StripOffsets</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">each</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">position</span> <span class="n" style="color: #333;">require</span> <span class="n" style="color: #333;">separate</span> <span class="n" style="color: #333;">unwrapping</span><span class="p">.</span></span>
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244
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<td class="diff-line-num new_line" data-linenumber="268" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
268
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<pre style="margin: 0;"> <span id="LC268" class="line" lang="mosel"> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">StripByteCounts</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">contains</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">number</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">bytes</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">uncompressed</span></span>
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245
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<td class="diff-line-num new_line" data-linenumber="269" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
269
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<pre style="margin: 0;"> <span id="LC269" class="line" lang="mosel"> <span class="n" style="color: #333;">data</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">large</span> <span class="n" style="color: #333;">LSM</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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<td class="diff-line-num old_line" data-linenumber="246" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
246
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<td class="diff-line-num new_line" data-linenumber="270" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
270
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<pre style="margin: 0;"> <span id="LC270" class="line" lang="mosel"> <span class="p">*</span> <span class="p">*</span><span class="n" style="color: #333;">NDPI</span><span class="p">*</span> <span class="k" style="font-weight: 600;">uses</span> <span class="n" style="color: #333;">some</span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">offsets</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">header</span><span class="p">,</span> <span class="n" style="color: #333;">IFD</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">structures</span><span class="p">.</span></span>
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<td class="diff-line-num old_line" data-linenumber="247" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
247
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<td class="diff-line-num new_line" data-linenumber="271" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
271
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<pre style="margin: 0;"> <span id="LC271" class="line" lang="mosel"> <span class="n" style="color: #333;">Tag</span> <span class="n" style="color: #333;">values</span><span class="p">/</span><span class="n" style="color: #333;">offsets</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">corrected</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">high</span> <span class="n" style="color: #333;">bits</span> <span class="n" style="color: #333;">stored</span> <span class="n" style="color: #333;">after</span> <span class="n" style="color: #333;">IFD</span></span>
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<td class="diff-line-num old old_line" data-linenumber="248" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
248
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<td class="diff-line-num new_line old" data-linenumber="272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC248" class="line" lang="mosel"> <span class="n" style="color: #333;">structures</span><span class="p">.</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">tiles</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">dimensions</span> <span class="p">></span> <span class="m" style="color: #099;">65536</span> <span class="n" style="color: #333;">are</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">readable</span></span>
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<td class="diff-line-num old old_line" data-linenumber="249" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
249
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<td class="diff-line-num new_line old" data-linenumber="272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC249" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">libjpeg</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">NDPI</span> <span class="n" style="color: #333;">files</span> <span class="p"><</span> <span class="m" style="color: #099;">4</span> <span class="n" style="color: #333;">GB</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">decompress</span> <span class="n" style="color: #333;">large</span> <span class="n" style="color: #333;">JPEG</span></span>
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250
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<td class="diff-line-num new_line old" data-linenumber="272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC250" class="line" lang="mosel"> <span class="n" style="color: #333;">tiles</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">imagecodecs</span> <span class="n" style="color: #333;">library</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">Windows</span><span class="p">.</span></span>
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<td class="diff-line-num new old_line" data-linenumber="251" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
272
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<pre style="margin: 0;">+<span id="LC272" class="line" lang="mosel"> <span class="n" style="color: #333;">structures</span><span class="p">.</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">segments</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">dimensions</span> <span class="p">></span><span class="m" style="color: #099;">65536</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">missing</span></span>
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<td class="diff-line-num new old_line" data-linenumber="251" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="273" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
273
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<pre style="margin: 0;">+<span id="LC273" class="line" lang="mosel"> <span class="n" style="color: #333;">restart</span> <span class="n" style="color: #333;">markers</span> <span class="n" style="color: #333;">are</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">readable</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">libjpeg</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">NDPI</span></span>
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<td class="diff-line-num new old_line" data-linenumber="251" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="274" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
274
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<pre style="margin: 0;">+<span id="LC274" class="line" lang="mosel"> <span class="n" style="color: #333;">files</span> <span class="p">></span> <span class="m" style="color: #099;">4</span> <span class="n" style="color: #333;">GB</span><span class="p">.</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">segments</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">restart</span> <span class="n" style="color: #333;">markers</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">dimensions</span> <span class="p">></span><span class="m" style="color: #099;">65536</span> <span class="n" style="color: #333;">can</span></span>
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<td class="diff-line-num new new_line" data-linenumber="275" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
275
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<pre style="margin: 0;">+<span id="LC275" class="line" lang="mosel"> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">decoded</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">imagecodecs</span> <span class="n" style="color: #333;">library</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">Windows</span><span class="p">.</span></span>
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<td class="diff-line-num old_line" data-linenumber="251" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
251
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<td class="diff-line-num new_line" data-linenumber="276" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
276
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<pre style="margin: 0;"> <span id="LC276" class="line" lang="mosel"> <span class="p">*</span> <span class="p">*</span><span class="n" style="color: #333;">ScanImage</span><span class="p">*</span> <span class="n" style="color: #333;">optionally</span> <span class="n" style="color: #333;">allows</span> <span class="n" style="color: #333;">corrupt</span> <span class="n" style="color: #333;">non</span><span class="p">-</span><span class="n" style="color: #333;">BigTIFF</span> <span class="n" style="color: #333;">files</span> <span class="p">></span> <span class="m" style="color: #099;">2</span> <span class="n" style="color: #333;">GB</span><span class="p">.</span> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">values</span></span>
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<td class="diff-line-num old_line" data-linenumber="252" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
252
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<td class="diff-line-num new_line" data-linenumber="277" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
277
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<pre style="margin: 0;"> <span id="LC277" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">StripOffsets</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">StripByteCounts</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">recovered</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">constant</span></span>
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<td class="diff-line-num old_line" data-linenumber="253" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
253
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<td class="diff-line-num new_line" data-linenumber="278" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
278
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<pre style="margin: 0;"> <span id="LC278" class="line" lang="mosel"> <span class="n" style="color: #333;">differences</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">offsets</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">IFD</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">values</span> <span class="n" style="color: #333;">throughout</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">file</span><span class="p">.</span></span>
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254
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<td class="diff-line-num new_line old" data-linenumber="279" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC254" class="line" lang="mosel"> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">such</span> <span class="n" style="color: #333;">files</span> <span class="n" style="color: #333;"><span class="idiff left">on</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">Python</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">3</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">if</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">the</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">image</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">data</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">are</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">stored</span></span></span>
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255
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<pre style="margin: 0;">-<span id="LC255" class="line" lang="mosel"> <span class="n" style="color: #333;"><span class="idiff left">contiguously</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">in</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">each</span> <span class="n" style="color: #333;">page</span><span class="p">.</span></span>
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279
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<pre style="margin: 0;">+<span id="LC279" class="line" lang="mosel"> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">such</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;"><span class="idiff left">if</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">the</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">image</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">data</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">are</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">stored</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">contiguously</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff right">in</span></span></span>
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280
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<pre style="margin: 0;">+<span id="LC280" class="line" lang="mosel"> <span class="n" style="color: #333;">each</span> <span class="n" style="color: #333;">page</span><span class="p">.</span></span>
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256
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<td class="diff-line-num new_line" data-linenumber="281" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
281
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<pre style="margin: 0;"> <span id="LC281" class="line" lang="mosel"> <span class="p">*</span> <span class="p">*</span><span class="n" style="color: #333;">GeoTIFF</span><span class="p">*</span> <span class="n" style="color: #333;">sparse</span> <span class="n" style="color: #333;">files</span> <span class="n" style="color: #333;">allow</span> <span class="n" style="color: #333;">strip</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">tile</span> <span class="n" style="color: #333;">offsets</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">byte</span> <span class="n" style="color: #333;">counts</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">be</span> <span class="m" style="color: #099;">0.</span></span>
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257
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282
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<pre style="margin: 0;"> <span id="LC282" class="line" lang="mosel"> <span class="n" style="color: #333;">Such</span> <span class="n" style="color: #333;">segments</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">implicitly</span> <span class="k" style="font-weight: 600;">set</span> <span class="k" style="font-weight: 600;">to</span> <span class="m" style="color: #099;">0</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">NODATA</span> <span class="n" style="color: #333;">value</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">reading</span><span class="p">.</span></span>
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258
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<td class="diff-line-num new_line" data-linenumber="283" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
283
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<pre style="margin: 0;"> <span id="LC283" class="line" lang="mosel"> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">GeoTIFF</span> <span class="n" style="color: #333;">sparse</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="285" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="310" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -285,29 +310,33 @@ Description: Read and write TIFF(r) files</td>
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310
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<pre style="margin: 0;"> <span id="LC310" class="line" lang="mosel"> </span>
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286
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311
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<pre style="margin: 0;"> <span id="LC311" class="line" lang="mosel"> <span class="n" style="color: #333;">References</span></span>
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287
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312
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<pre style="margin: 0;"> <span id="LC312" class="line" lang="mosel"> <span class="p">----------</span></span>
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288
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<pre style="margin: 0;">-<span id="LC288" class="line" lang="mosel"> <span class="m" style="color: #099;">1.</span> <span class="n" style="color: #333;">TIFF</span> <span class="m" style="color: #099;">6.0</span> <span class="n" style="color: #333;">Specification</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">Supplements</span><span class="p">.</span> <span class="n" style="color: #333;">Adobe</span> <span class="n" style="color: #333;">Systems</span> <span class="n" style="color: #333;">Incorporated</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="289" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
289
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<pre style="margin: 0;">-<span id="LC289" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">adobe</span><span class="p">.</span><span class="n" style="color: #333;">io</span><span class="p">/</span><span class="n" style="color: #333;">open</span><span class="p">/</span><span class="n" style="color: #333;">standards</span><span class="p">/</span><span class="n" style="color: #333;">TIFF</span><span class="p">.</span><span class="n" style="color: #333;">html</span></span>
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290
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<td class="diff-line-num new_line old" data-linenumber="313" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC290" class="line" lang="mosel"> <span class="m" style="color: #099;">2.</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span> <span class="n" style="color: #333;">FAQ</span><span class="p">.</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">awaresystems</span><span class="p">.</span><span class="n" style="color: #333;">be</span><span class="p">/</span><span class="n" style="color: #333;">imaging</span><span class="p">/</span><span class="n" style="color: #333;">tiff</span><span class="p">/</span><span class="n" style="color: #333;">faq</span><span class="p">.</span><span class="n" style="color: #333;">html</span></span>
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291
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<pre style="margin: 0;">-<span id="LC291" class="line" lang="mosel"> <span class="m" style="color: #099;">3.</span> <span class="n" style="color: #333;">MetaMorph</span> <span class="n" style="color: #333;">Stack</span> <span class="p">(</span><span class="n" style="color: #333;">STK</span><span class="p">)</span> <span class="n" style="color: #333;">Image</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="292" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
292
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<td class="diff-line-num new_line old" data-linenumber="313" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC292" class="line" lang="mosel"> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">mdc</span><span class="p">.</span><span class="n" style="color: #333;">custhelp</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">app</span><span class="p">/</span><span class="n" style="color: #333;">answers</span><span class="p">/</span><span class="n" style="color: #333;">detail</span><span class="p">/</span><span class="n" style="color: #333;">a_id</span><span class="p">/</span><span class="m" style="color: #099;">18862</span></span>
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<td class="diff-line-num old old_line" data-linenumber="293" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
293
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<td class="diff-line-num new_line old" data-linenumber="313" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC293" class="line" lang="mosel"> <span class="m" style="color: #099;">4.</span> <span class="n" style="color: #333;">Image</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span> <span class="n" style="color: #333;">Description</span> <span class="n" style="color: #333;">LSM</span> <span class="m" style="color: #099;">5</span><span class="p">/</span><span class="m" style="color: #099;">7</span> <span class="n" style="color: #333;">Release</span> <span class="m" style="color: #099;">6.0</span> <span class="p">(</span><span class="n" style="color: #333;">ZEN</span> <span class="m" style="color: #099;">2010</span><span class="p">).</span></span>
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294
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<pre style="margin: 0;">-<span id="LC294" class="line" lang="mosel"> <span class="n" style="color: #333;">Carl</span> <span class="n" style="color: #333;">Zeiss</span> <span class="n" style="color: #333;">MicroImaging</span> <span class="n" style="color: #333;">GmbH</span><span class="p">.</span> <span class="n" style="color: #333;">BioSciences</span><span class="p">.</span> <span class="n" style="color: #333;">May</span> <span class="m" style="color: #099;">10</span><span class="p">,</span> <span class="m" style="color: #099;">2011</span></span>
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295
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<pre style="margin: 0;">-<span id="LC295" class="line" lang="mosel"> <span class="m" style="color: #099;">5.</span> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">format</span><span class="p">.</span></span>
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<pre style="margin: 0;">-<span id="LC296" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">docs</span><span class="p">.</span><span class="n" style="color: #333;">openmicroscopy</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">ome</span><span class="p">-</span><span class="k" style="font-weight: 600;">model</span><span class="p">/</span><span class="m" style="color: #099;">5.6.4</span><span class="p">/</span><span class="n" style="color: #333;">ome</span><span class="p">-</span><span class="n" style="color: #333;">tiff</span><span class="p">/</span></span>
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<pre style="margin: 0;">-<span id="LC297" class="line" lang="mosel"> <span class="m" style="color: #099;">6.</span> <span class="n" style="color: #333;">UltraQuant</span><span class="p">(</span><span class="n" style="color: #333;">r</span><span class="p">)</span> <span class="k" style="font-weight: 600;">Version</span> <span class="m" style="color: #099;">6.0</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">Windows</span> <span class="n" style="color: #333;">Start</span><span class="p">-</span><span class="n" style="color: #333;">Up</span> <span class="n" style="color: #333;">Guide</span><span class="p">.</span></span>
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<pre style="margin: 0;">-<span id="LC298" class="line" lang="mosel"> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">ultralum</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">images</span><span class="p">%</span><span class="m" style="color: #099;">20ul</span><span class="n" style="color: #333;">tralum</span><span class="p">/</span><span class="n" style="color: #333;">pdf</span><span class="p">/</span><span class="n" style="color: #333;">UQStart</span><span class="p">%</span><span class="m" style="color: #099;">20U</span><span class="n" style="color: #333;">p</span><span class="p">%</span><span class="m" style="color: #099;">20</span><span class="n" style="color: #333;">Guide</span><span class="p">.</span><span class="n" style="color: #333;">pdf</span></span>
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<pre style="margin: 0;">-<span id="LC299" class="line" lang="mosel"> <span class="m" style="color: #099;">7.</span> <span class="n" style="color: #333;">Micro</span><span class="p">-</span><span class="n" style="color: #333;">Manager</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Formats</span><span class="p">.</span></span>
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<pre style="margin: 0;">-<span id="LC300" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">micro</span><span class="p">-</span><span class="n" style="color: #333;">manager</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">wiki</span><span class="p">/</span><span class="n" style="color: #333;">Micro</span><span class="p">-</span><span class="n" style="color: #333;">Manager_File_Formats</span></span>
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<pre style="margin: 0;">-<span id="LC301" class="line" lang="mosel"> <span class="m" style="color: #099;">8.</span> <span class="n" style="color: #333;">Tags</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">TIFF</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">Related</span> <span class="n" style="color: #333;">Specifications</span><span class="p">.</span> <span class="n" style="color: #333;">Digital</span> <span class="n" style="color: #333;">Preservation</span><span class="p">.</span></span>
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302
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<pre style="margin: 0;">-<span id="LC302" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">loc</span><span class="p">.</span><span class="n" style="color: #333;">gov</span><span class="p">/</span><span class="n" style="color: #333;">preservation</span><span class="p">/</span><span class="n" style="color: #333;">digital</span><span class="p">/</span><span class="n" style="color: #333;">formats</span><span class="p">/</span><span class="n" style="color: #333;">content</span><span class="p">/</span><span class="n" style="color: #333;">tiff_tags</span><span class="p">.</span><span class="n" style="color: #333;">shtml</span></span>
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<pre style="margin: 0;">-<span id="LC303" class="line" lang="mosel"> <span class="m" style="color: #099;">9.</span> <span class="n" style="color: #333;">ScanImage</span> <span class="n" style="color: #333;">BigTiff</span> <span class="n" style="color: #333;">Specification</span> <span class="p">-</span> <span class="n" style="color: #333;">ScanImage</span> <span class="m" style="color: #099;">2016.</span></span>
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304
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<pre style="margin: 0;">-<span id="LC304" class="line" lang="mosel"> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">scanimage</span><span class="p">.</span><span class="n" style="color: #333;">vidriotechnologies</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">display</span><span class="p">/</span><span class="n" style="color: #333;">SI2016</span><span class="p">/</span></span>
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305
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<pre style="margin: 0;">-<span id="LC305" class="line" lang="mosel"> <span class="n" style="color: #333;">ScanImage</span><span class="p">+</span><span class="n" style="color: #333;">BigTiff</span><span class="p">+</span><span class="n" style="color: #333;">Specification</span></span>
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<td class="diff-line-num old old_line" data-linenumber="306" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
306
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<pre style="margin: 0;">-<span id="LC306" class="line" lang="mosel"> <span class="m" style="color: #099;">10.</span> <span class="n" style="color: #333;">CIPA</span> <span class="n" style="color: #333;">DC</span><span class="p">-</span><span class="m" style="color: #099;">008</span><span class="p">-</span><span class="m" style="color: #099;">2016</span><span class="p">:</span> <span class="n" style="color: #333;">Exchangeable</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">format</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">digital</span> <span class="n" style="color: #333;">still</span> <span class="n" style="color: #333;">cameras</span><span class="p">:</span></span>
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307
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<pre style="margin: 0;">-<span id="LC307" class="line" lang="mosel"> <span class="n" style="color: #333;">Exif</span> <span class="k" style="font-weight: 600;">Version</span> <span class="m" style="color: #099;">2.31</span><span class="p">.</span></span>
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308
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<pre style="margin: 0;">-<span id="LC308" class="line" lang="mosel"> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">cipa</span><span class="p">.</span><span class="n" style="color: #333;">jp</span><span class="p">/</span><span class="n" style="color: #333;">std</span><span class="p">/</span><span class="n" style="color: #333;">documents</span><span class="p">/</span><span class="n" style="color: #333;">e</span><span class="p">/</span><span class="n" style="color: #333;">DC</span><span class="p">-</span><span class="m" style="color: #099;">008</span><span class="p">-</span><span class="n" style="color: #333;">Translation</span><span class="p">-</span><span class="m" style="color: #099;">2016</span><span class="p">-</span><span class="n" style="color: #333;">E</span><span class="p">.</span><span class="n" style="color: #333;">pdf</span></span>
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309
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<pre style="margin: 0;">-<span id="LC309" class="line" lang="mosel"> <span class="m" style="color: #099;">11.</span> <span class="n" style="color: #333;">ZIF</span><span class="p">,</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">Zoomable</span> <span class="n" style="color: #333;">Image</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">format</span><span class="p">.</span> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">zif</span><span class="p">.</span><span class="n" style="color: #333;">photo</span><span class="p">/</span></span>
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310
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<pre style="margin: 0;">-<span id="LC310" class="line" lang="mosel"> <span class="m" style="color: #099;">12.</span> <span class="n" style="color: #333;">GeoTIFF</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">gdal</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">drivers</span><span class="p">/</span><span class="n" style="color: #333;">raster</span><span class="p">/</span><span class="n" style="color: #333;">gtiff</span><span class="p">.</span><span class="n" style="color: #333;">html</span></span>
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<pre style="margin: 0;">+<span id="LC313" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">TIFF</span> <span class="m" style="color: #099;">6.0</span> <span class="n" style="color: #333;">Specification</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">Supplements</span><span class="p">.</span> <span class="n" style="color: #333;">Adobe</span> <span class="n" style="color: #333;">Systems</span> <span class="n" style="color: #333;">Incorporated</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC314" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">adobe</span><span class="p">.</span><span class="n" style="color: #333;">io</span><span class="p">/</span><span class="n" style="color: #333;">open</span><span class="p">/</span><span class="n" style="color: #333;">standards</span><span class="p">/</span><span class="n" style="color: #333;">TIFF</span><span class="p">.</span><span class="n" style="color: #333;">html</span></span>
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<pre style="margin: 0;">+<span id="LC315" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span> <span class="n" style="color: #333;">FAQ</span><span class="p">.</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">awaresystems</span><span class="p">.</span><span class="n" style="color: #333;">be</span><span class="p">/</span><span class="n" style="color: #333;">imaging</span><span class="p">/</span><span class="n" style="color: #333;">tiff</span><span class="p">/</span><span class="n" style="color: #333;">faq</span><span class="p">.</span><span class="n" style="color: #333;">html</span></span>
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<pre style="margin: 0;">+<span id="LC316" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">BigTIFF</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC317" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">awaresystems</span><span class="p">.</span><span class="n" style="color: #333;">be</span><span class="p">/</span><span class="n" style="color: #333;">imaging</span><span class="p">/</span><span class="n" style="color: #333;">tiff</span><span class="p">/</span><span class="n" style="color: #333;">bigtiff</span><span class="p">.</span><span class="n" style="color: #333;">html</span></span>
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318
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<pre style="margin: 0;">+<span id="LC318" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">MetaMorph</span> <span class="n" style="color: #333;">Stack</span> <span class="p">(</span><span class="n" style="color: #333;">STK</span><span class="p">)</span> <span class="n" style="color: #333;">Image</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span><span class="p">.</span></span>
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319
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<pre style="margin: 0;">+<span id="LC319" class="line" lang="mosel"> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">mdc</span><span class="p">.</span><span class="n" style="color: #333;">custhelp</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">app</span><span class="p">/</span><span class="n" style="color: #333;">answers</span><span class="p">/</span><span class="n" style="color: #333;">detail</span><span class="p">/</span><span class="n" style="color: #333;">a_id</span><span class="p">/</span><span class="m" style="color: #099;">18862</span></span>
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320
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<pre style="margin: 0;">+<span id="LC320" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Image</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span> <span class="n" style="color: #333;">Description</span> <span class="n" style="color: #333;">LSM</span> <span class="m" style="color: #099;">5</span><span class="p">/</span><span class="m" style="color: #099;">7</span> <span class="n" style="color: #333;">Release</span> <span class="m" style="color: #099;">6.0</span> <span class="p">(</span><span class="n" style="color: #333;">ZEN</span> <span class="m" style="color: #099;">2010</span><span class="p">).</span></span>
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<pre style="margin: 0;">+<span id="LC321" class="line" lang="mosel"> <span class="n" style="color: #333;">Carl</span> <span class="n" style="color: #333;">Zeiss</span> <span class="n" style="color: #333;">MicroImaging</span> <span class="n" style="color: #333;">GmbH</span><span class="p">.</span> <span class="n" style="color: #333;">BioSciences</span><span class="p">.</span> <span class="n" style="color: #333;">May</span> <span class="m" style="color: #099;">10</span><span class="p">,</span> <span class="m" style="color: #099;">2011</span></span>
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<pre style="margin: 0;">+<span id="LC322" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">format</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC323" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">docs</span><span class="p">.</span><span class="n" style="color: #333;">openmicroscopy</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">ome</span><span class="p">-</span><span class="k" style="font-weight: 600;">model</span><span class="p">/</span><span class="n" style="color: #333;">latest</span><span class="p">/</span></span>
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<pre style="margin: 0;">+<span id="LC324" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">UltraQuant</span><span class="p">(</span><span class="n" style="color: #333;">r</span><span class="p">)</span> <span class="k" style="font-weight: 600;">Version</span> <span class="m" style="color: #099;">6.0</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">Windows</span> <span class="n" style="color: #333;">Start</span><span class="p">-</span><span class="n" style="color: #333;">Up</span> <span class="n" style="color: #333;">Guide</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC325" class="line" lang="mosel"> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">ultralum</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">images</span><span class="p">%</span><span class="m" style="color: #099;">20ul</span><span class="n" style="color: #333;">tralum</span><span class="p">/</span><span class="n" style="color: #333;">pdf</span><span class="p">/</span><span class="n" style="color: #333;">UQStart</span><span class="p">%</span><span class="m" style="color: #099;">20U</span><span class="n" style="color: #333;">p</span><span class="p">%</span><span class="m" style="color: #099;">20</span><span class="n" style="color: #333;">Guide</span><span class="p">.</span><span class="n" style="color: #333;">pdf</span></span>
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<pre style="margin: 0;">+<span id="LC326" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Micro</span><span class="p">-</span><span class="n" style="color: #333;">Manager</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Formats</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC327" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">micro</span><span class="p">-</span><span class="n" style="color: #333;">manager</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">wiki</span><span class="p">/</span><span class="n" style="color: #333;">Micro</span><span class="p">-</span><span class="n" style="color: #333;">Manager_File_Formats</span></span>
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328
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<pre style="margin: 0;">+<span id="LC328" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">ScanImage</span> <span class="n" style="color: #333;">BigTiff</span> <span class="n" style="color: #333;">Specification</span> <span class="p">-</span> <span class="n" style="color: #333;">ScanImage</span> <span class="m" style="color: #099;">2016.</span></span>
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<pre style="margin: 0;">+<span id="LC329" class="line" lang="mosel"> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">scanimage</span><span class="p">.</span><span class="n" style="color: #333;">vidriotechnologies</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">display</span><span class="p">/</span><span class="n" style="color: #333;">SI2016</span><span class="p">/</span></span>
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<pre style="margin: 0;">+<span id="LC330" class="line" lang="mosel"> <span class="n" style="color: #333;">ScanImage</span><span class="p">+</span><span class="n" style="color: #333;">BigTiff</span><span class="p">+</span><span class="n" style="color: #333;">Specification</span></span>
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<pre style="margin: 0;">+<span id="LC331" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">ZIF</span><span class="p">,</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">Zoomable</span> <span class="n" style="color: #333;">Image</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">format</span><span class="p">.</span> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">zif</span><span class="p">.</span><span class="n" style="color: #333;">photo</span><span class="p">/</span></span>
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332
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<pre style="margin: 0;">+<span id="LC332" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">GeoTIFF</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">gdal</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">drivers</span><span class="p">/</span><span class="n" style="color: #333;">raster</span><span class="p">/</span><span class="n" style="color: #333;">gtiff</span><span class="p">.</span><span class="n" style="color: #333;">html</span></span>
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333
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<pre style="margin: 0;">+<span id="LC333" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Cloud</span> <span class="n" style="color: #333;">optimized</span> <span class="n" style="color: #333;">GeoTIFF</span><span class="p">.</span></span>
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334
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<pre style="margin: 0;">+<span id="LC334" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">github</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">cogeotiff</span><span class="p">/</span><span class="n" style="color: #333;">cog</span><span class="p">-</span><span class="n" style="color: #333;">spec</span><span class="p">/</span><span class="n" style="color: #333;">blob</span><span class="p">/</span><span class="n" style="color: #333;">master</span><span class="p">/</span><span class="n" style="color: #333;">spec</span><span class="p">.</span><span class="n" style="color: #333;">md</span></span>
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<td class="diff-line-num new new_line" data-linenumber="335" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
335
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<pre style="margin: 0;">+<span id="LC335" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Tags</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">TIFF</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">Related</span> <span class="n" style="color: #333;">Specifications</span><span class="p">.</span> <span class="n" style="color: #333;">Digital</span> <span class="n" style="color: #333;">Preservation</span><span class="p">.</span></span>
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336
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<pre style="margin: 0;">+<span id="LC336" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">loc</span><span class="p">.</span><span class="n" style="color: #333;">gov</span><span class="p">/</span><span class="n" style="color: #333;">preservation</span><span class="p">/</span><span class="n" style="color: #333;">digital</span><span class="p">/</span><span class="n" style="color: #333;">formats</span><span class="p">/</span><span class="n" style="color: #333;">content</span><span class="p">/</span><span class="n" style="color: #333;">tiff_tags</span><span class="p">.</span><span class="n" style="color: #333;">shtml</span></span>
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337
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<pre style="margin: 0;">+<span id="LC337" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">CIPA</span> <span class="n" style="color: #333;">DC</span><span class="p">-</span><span class="m" style="color: #099;">008</span><span class="p">-</span><span class="m" style="color: #099;">2016</span><span class="p">:</span> <span class="n" style="color: #333;">Exchangeable</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">format</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">digital</span> <span class="n" style="color: #333;">still</span> <span class="n" style="color: #333;">cameras</span><span class="p">:</span></span>
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338
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<pre style="margin: 0;">+<span id="LC338" class="line" lang="mosel"> <span class="n" style="color: #333;">Exif</span> <span class="k" style="font-weight: 600;">Version</span> <span class="m" style="color: #099;">2.31</span><span class="p">.</span></span>
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339
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<pre style="margin: 0;">+<span id="LC339" class="line" lang="mosel"> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">cipa</span><span class="p">.</span><span class="n" style="color: #333;">jp</span><span class="p">/</span><span class="n" style="color: #333;">std</span><span class="p">/</span><span class="n" style="color: #333;">documents</span><span class="p">/</span><span class="n" style="color: #333;">e</span><span class="p">/</span><span class="n" style="color: #333;">DC</span><span class="p">-</span><span class="m" style="color: #099;">008</span><span class="p">-</span><span class="n" style="color: #333;">Translation</span><span class="p">-</span><span class="m" style="color: #099;">2016</span><span class="p">-</span><span class="n" style="color: #333;">E</span><span class="p">.</span><span class="n" style="color: #333;">pdf</span></span>
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311
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<pre style="margin: 0;"> <span id="LC340" class="line" lang="mosel"> </span>
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<pre style="margin: 0;"> <span id="LC341" class="line" lang="mosel"> <span class="n" style="color: #333;">Examples</span></span>
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313
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342
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<pre style="margin: 0;"> <span id="LC342" class="line" lang="mosel"> <span class="p">--------</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="440" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="469" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -440,19 +469,21 @@ Description: Read and write TIFF(r) files</td>
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440
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469
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<pre style="margin: 0;"> <span id="LC469" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tag_name</span><span class="p">,</span> <span class="n" style="color: #333;">tag_value</span> <span class="p">=</span> <span class="n" style="color: #333;">tag</span><span class="p">.</span><span class="n" style="color: #333;">name</span><span class="p">,</span> <span class="n" style="color: #333;">tag</span><span class="p">.</span><span class="n" style="color: #333;">value</span></span>
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441
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470
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<pre style="margin: 0;"> <span id="LC470" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">image</span> <span class="p">=</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">()</span></span>
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442
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471
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<pre style="margin: 0;"> <span id="LC471" class="line" lang="mosel"> </span>
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443
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<pre style="margin: 0;">-<span id="LC443" class="line" lang="mosel"> <span class="n" style="color: #333;"><span class="idiff left">Save</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">two</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">image</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">series</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">to</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">a</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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472
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<pre style="margin: 0;">+<span id="LC472" class="line" lang="mosel"> <span class="n" style="color: #333;"><span class="idiff left">Write</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">two</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">numpy</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">arrays</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">to</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">a</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">multi</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">series</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">OME</span></span><span class="p"><span class="idiff right">-</span></span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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444
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473
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<pre style="margin: 0;"> <span id="LC473" class="line" lang="mosel"> </span>
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<pre style="margin: 0;">-<span id="LC445" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data0</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">randint</span><span class="p">(</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="m" style="color: #099;">255</span><span class="p">,</span> <span class="p">(</span><span class="m" style="color: #099;">3<span class="idiff left">01</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff right">219</span></span><span class="p">,</span> <span class="m" style="color: #099;">3</span><span class="p">),</span> <span class="s1" style="color: #d14;">'uint8'</span><span class="p">)</span></span>
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446
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<td class="diff-line-num new_line old" data-linenumber="474" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC446" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data1</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">randint</span><span class="p">(</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="m" style="color: #099;"><span class="idiff left">255</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="p"><span class="idiff">(</span></span><span class="m" style="color: #099;"><span class="idiff">5</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">301</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff right">219</span></span><span class="p">),</span> <span class="s1" style="color: #d14;">'uint16'</span><span class="p">)</span></span>
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447
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<td class="diff-line-num new_line old" data-linenumber="474" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC447" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.<span class="idiff left right">tif'</span></span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="474" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
474
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<pre style="margin: 0;">+<span id="LC474" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data0</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">randint</span><span class="p">(</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="m" style="color: #099;">255</span><span class="p">,</span> <span class="p">(</span><span class="m" style="color: #099;">3<span class="idiff left">2</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff right">32</span></span><span class="p">,</span> <span class="m" style="color: #099;">3</span><span class="p">),</span> <span class="s1" style="color: #d14;">'uint8'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="475" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
475
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<pre style="margin: 0;">+<span id="LC475" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data1</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">randint</span><span class="p">(</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="m" style="color: #099;"><span class="idiff left">1023</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="p"><span class="idiff">(</span></span><span class="m" style="color: #099;"><span class="idiff">5</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">256</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff right">256</span></span><span class="p">),</span> <span class="s1" style="color: #d14;">'uint16'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="476" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
476
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<pre style="margin: 0;">+<span id="LC476" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.<span class="idiff left">ome.tif'</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">ome</span></span><span class="p"><span class="idiff">=</span></span><span class="nb" style="color: #0086b3;"><span class="idiff right">True</span></span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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448
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<td class="diff-line-num new_line" data-linenumber="477" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
477
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<pre style="margin: 0;"> <span id="LC477" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data0</span><span class="p">,</span> <span class="n" style="color: #333;">compress</span><span class="p">=</span><span class="m" style="color: #099;">6</span><span class="p">,</span> <span class="n" style="color: #333;">photometric</span><span class="p">=</span><span class="s1" style="color: #d14;">'rgb'</span><span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="449" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
449
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<td class="diff-line-num new_line old" data-linenumber="478" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC449" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data1</span><span class="p">,</span> <span class="n" style="color: #333;">compress</span><span class="p">=</span><span class="m" style="color: #099;">6</span><span class="p">,</span> <span class="n" style="color: #333;">photometric</span><span class="p">=</span><span class="s1" style="color: #d14;">'minisblack'</span><span class="p">,</span> <span class="n" style="color: #333;">contiguous</span><span class="p">=</span><span class="nb" style="color: #0086b3;">False</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="478" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
478
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<pre style="margin: 0;">+<span id="LC478" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data1</span><span class="p">,</span> <span class="n" style="color: #333;">photometric</span><span class="p">=</span><span class="s1" style="color: #d14;">'minisblack'</span><span class="p">,</span> <span class="n" style="color: #333;">contiguous</span><span class="p">=</span><span class="nb" style="color: #0086b3;">False</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="479" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
479
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<pre style="margin: 0;">+<span id="LC479" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">metadata</span><span class="p">=</span><span class="n" style="color: #333;">dict</span><span class="p">(</span><span class="n" style="color: #333;">axes</span><span class="p">=</span><span class="s1" style="color: #d14;">'ZYX'</span><span class="p">,</span> <span class="n" style="color: #333;">SignificantBits</span><span class="p">=</span><span class="m" style="color: #099;">10</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="480" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
480
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<pre style="margin: 0;">+<span id="LC480" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">PositionZ</span><span class="p">=[</span><span class="m" style="color: #099;">0.0</span><span class="p">,</span> <span class="m" style="color: #099;">1.0</span><span class="p">,</span> <span class="m" style="color: #099;">2.0</span><span class="p">,</span> <span class="m" style="color: #099;">3.0</span><span class="p">,</span> <span class="m" style="color: #099;">4.0</span><span class="p">]))</span></span>
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450
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481
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<pre style="margin: 0;"> <span id="LC481" class="line" lang="mosel"> </span>
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451
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<td class="diff-line-num new_line old" data-linenumber="482" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC451" class="line" lang="mosel"> <span class="n" style="color: #333;">Read</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">second</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="482" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
482
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<pre style="margin: 0;">+<span id="LC482" class="line" lang="mosel"> <span class="n" style="color: #333;">Read</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">second</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;"><span class="idiff left">OME</span></span><span class="p"><span class="idiff right">-</span></span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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452
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<td class="diff-line-num new_line" data-linenumber="483" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
483
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<pre style="margin: 0;"> <span id="LC483" class="line" lang="mosel"> </span>
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453
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<td class="diff-line-num new_line old" data-linenumber="484" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC453" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">series1</span> <span class="p">=</span> <span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">series</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC484" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">series1</span> <span class="p">=</span> <span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.<span class="idiff left right">ome.</span>tif'</span><span class="p">,</span> <span class="n" style="color: #333;">series</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC485" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">series1</span><span class="p">.</span><span class="n" style="color: #333;">shape</span></span>
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<pre style="margin: 0;">-<span id="LC455" class="line" lang="mosel"> <span class="p">(</span><span class="m" style="color: #099;">5</span><span class="p">,</span> <span class="m" style="color: #099;"><span class="idiff left">301</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff right">219</span></span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC486" class="line" lang="mosel"> <span class="p">(</span><span class="m" style="color: #099;">5</span><span class="p">,</span> <span class="m" style="color: #099;"><span class="idiff left">256</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff right">256</span></span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC487" class="line" lang="mosel"> </span>
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<pre style="margin: 0;"> <span id="LC488" class="line" lang="mosel"> <span class="n" style="color: #333;">Read</span> <span class="n" style="color: #333;">an</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">stack</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">name</span> <span class="n" style="color: #333;">pattern</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC489" class="line" lang="mosel"> </span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="498" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -467,13 +498,46 @@ Description: Read and write TIFF(r) files</td>
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<pre style="margin: 0;"> <span id="LC498" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">shape</span></span>
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<pre style="margin: 0;"> <span id="LC499" class="line" lang="mosel"> <span class="p">(</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC500" class="line" lang="mosel"> </span>
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<pre style="margin: 0;">-<span id="LC470" class="line" lang="mosel"> <span class="n" style="color: #333;">Create</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">a<span class="idiff left">n</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">it</span>erator</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">tiles</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC501" class="line" lang="mosel"> <span class="n" style="color: #333;">Create</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">a</span><span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff right">gen</span>erator</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">tiles</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC502" class="line" lang="mosel"> </span>
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<pre style="margin: 0;"> <span id="LC503" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">def</span> <span class="n" style="color: #333;">tiles</span><span class="p">():</span></span>
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<pre style="margin: 0;"> <span id="LC504" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">data</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="n" style="color: #333;">arange</span><span class="p">(</span><span class="m" style="color: #099;">3</span><span class="p">*</span><span class="m" style="color: #099;">4</span><span class="p">*</span><span class="m" style="color: #099;">16</span><span class="p">*</span><span class="m" style="color: #099;">16</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="p">=</span><span class="s1" style="color: #d14;">'uint16'</span><span class="p">).</span><span class="n" style="color: #333;">reshape</span><span class="p">((</span><span class="m" style="color: #099;">3</span><span class="p">*</span><span class="m" style="color: #099;">4</span><span class="p">,</span> <span class="m" style="color: #099;">16</span><span class="p">,</span> <span class="m" style="color: #099;">16</span><span class="p">))</span></span>
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<pre style="margin: 0;"> <span id="LC505" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">i</span> <span class="k" style="font-weight: 600;">in</span> <span class="k" style="font-weight: 600;">range</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">shape</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">]):</span> <span class="n" style="color: #333;">yield</span> <span class="n" style="color: #333;">data</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC506" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">tiles</span><span class="p">(),</span> <span class="n" style="color: #333;">dtype</span><span class="p">=</span><span class="s1" style="color: #d14;">'uint16'</span><span class="p">,</span> <span class="n" style="color: #333;">shape</span><span class="p">=(</span><span class="m" style="color: #099;">48</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">),</span> <span class="n" style="color: #333;">tile</span><span class="p">=(</span><span class="m" style="color: #099;">16</span><span class="p">,</span> <span class="m" style="color: #099;">16</span><span class="p">))</span></span>
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<pre style="margin: 0;"> <span id="LC507" class="line" lang="mosel"> </span>
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<pre style="margin: 0;">+<span id="LC508" class="line" lang="mosel"> <span class="n" style="color: #333;">Write</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">tiled</span><span class="p">,</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">resolution</span><span class="p">,</span> <span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compression</span><span class="p">:</span></span>
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509
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<pre style="margin: 0;">+<span id="LC509" class="line" lang="mosel"> </span>
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<td class="diff-line-num new new_line" data-linenumber="510" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
510
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<pre style="margin: 0;">+<span id="LC510" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="n" style="color: #333;">arange</span><span class="p">(</span><span class="m" style="color: #099;">1024</span><span class="p">*</span><span class="m" style="color: #099;">1024</span><span class="p">*</span><span class="m" style="color: #099;">3</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="p">=</span><span class="s1" style="color: #d14;">'uint8'</span><span class="p">).</span><span class="n" style="color: #333;">reshape</span><span class="p">((</span><span class="m" style="color: #099;">1024</span><span class="p">,</span> <span class="m" style="color: #099;">1024</span><span class="p">,</span> <span class="m" style="color: #099;">3</span><span class="p">))</span></span>
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<td class="diff-line-num new new_line" data-linenumber="511" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
511
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<pre style="margin: 0;">+<span id="LC511" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="512" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
512
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<pre style="margin: 0;">+<span id="LC512" class="line" lang="mosel"> <span class="p">...</span> <span class="k" style="font-weight: 600;">options</span> <span class="p">=</span> <span class="n" style="color: #333;">dict</span><span class="p">(</span><span class="n" style="color: #333;">tile</span><span class="p">=(</span><span class="m" style="color: #099;">256</span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">),</span> <span class="n" style="color: #333;">compress</span><span class="p">=</span><span class="s1" style="color: #d14;">'jpeg'</span><span class="p">,</span> <span class="n" style="color: #333;">metadata</span><span class="p">=</span><span class="n" style="color: #333;">None</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="513" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
513
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<pre style="margin: 0;">+<span id="LC513" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="p">**</span><span class="k" style="font-weight: 600;">options</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="514" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
514
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<pre style="margin: 0;">+<span id="LC514" class="line" lang="mosel"> <span class="p">...</span> <span class="p">#</span> <span class="n" style="color: #333;">save</span> <span class="n" style="color: #333;">pyramid</span> <span class="n" style="color: #333;">levels</span><span class="p">.</span> <span class="k" style="font-weight: 600;">In</span> <span class="n" style="color: #333;">production</span> <span class="n" style="color: #333;">use</span> <span class="n" style="color: #333;">resampling</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">generate</span> <span class="n" style="color: #333;">levels</span><span class="c1" style="color: #998; font-style: italic;">!</span></span>
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515
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<pre style="margin: 0;">+<span id="LC515" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">[::</span><span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="p">::</span><span class="m" style="color: #099;">2</span><span class="p">],</span> <span class="n" style="color: #333;">subfiletype</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="p">**</span><span class="k" style="font-weight: 600;">options</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="516" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
516
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<pre style="margin: 0;">+<span id="LC516" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">[::</span><span class="m" style="color: #099;">4</span><span class="p">,</span> <span class="p">::</span><span class="m" style="color: #099;">4</span><span class="p">],</span> <span class="n" style="color: #333;">subfiletype</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="p">**</span><span class="k" style="font-weight: 600;">options</span><span class="p">)</span></span>
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517
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<pre style="margin: 0;">+<span id="LC517" class="line" lang="mosel"> </span>
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<td class="diff-line-num new new_line" data-linenumber="518" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
518
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<pre style="margin: 0;">+<span id="LC518" class="line" lang="mosel"> <span class="n" style="color: #333;">Access</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">levels</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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519
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<pre style="margin: 0;">+<span id="LC519" class="line" lang="mosel"> </span>
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520
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<pre style="margin: 0;">+<span id="LC520" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">baseimage</span> <span class="p">=</span> <span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="521" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
521
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<pre style="margin: 0;">+<span id="LC521" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">second_level</span> <span class="p">=</span> <span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">series</span><span class="p">=</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">level</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="522" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
522
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<pre style="margin: 0;">+<span id="LC522" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="523" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
523
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<pre style="margin: 0;">+<span id="LC523" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">baseimage</span> <span class="p">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">].</span><span class="n" style="color: #333;">asarray</span><span class="p">()</span></span>
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<td class="diff-line-num new new_line" data-linenumber="524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
524
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<pre style="margin: 0;">+<span id="LC524" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">second_level</span> <span class="p">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">].</span><span class="n" style="color: #333;">levels</span><span class="p">[</span><span class="m" style="color: #099;">1</span><span class="p">].</span><span class="n" style="color: #333;">asarray</span><span class="p">()</span></span>
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525
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<pre style="margin: 0;">+<span id="LC525" class="line" lang="mosel"> </span>
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<pre style="margin: 0;">+<span id="LC526" class="line" lang="mosel"> <span class="n" style="color: #333;">Iterate</span> <span class="n" style="color: #333;">over</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">decode</span> <span class="n" style="color: #333;">single</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">tiles</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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527
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<pre style="margin: 0;">+<span id="LC527" class="line" lang="mosel"> </span>
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528
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<pre style="margin: 0;">+<span id="LC528" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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529
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<pre style="margin: 0;">+<span id="LC529" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">fh</span> <span class="p">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">filehandle</span></span>
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<td class="diff-line-num new new_line" data-linenumber="530" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
530
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<pre style="margin: 0;">+<span id="LC530" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">page</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="531" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
531
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<pre style="margin: 0;">+<span id="LC531" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">jpegtables</span> <span class="p">=</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">tags</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s1" style="color: #d14;">'JPEGTables'</span><span class="p">,</span> <span class="n" style="color: #333;">None</span><span class="p">)</span></span>
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532
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<pre style="margin: 0;">+<span id="LC532" class="line" lang="mosel"> <span class="p">...</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">jpegtables</span> <span class="n" style="color: #333;">is</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">None</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="533" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
533
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<pre style="margin: 0;">+<span id="LC533" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">jpegtables</span> <span class="p">=</span> <span class="n" style="color: #333;">jpegtables</span><span class="p">.</span><span class="n" style="color: #333;">value</span></span>
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<td class="diff-line-num new new_line" data-linenumber="534" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
534
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<pre style="margin: 0;">+<span id="LC534" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">index</span><span class="p">,</span> <span class="p">(</span><span class="n" style="color: #333;">offset</span><span class="p">,</span> <span class="n" style="color: #333;">bytecount</span><span class="p">)</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">enumerate</span><span class="p">(</span></span>
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535
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<pre style="margin: 0;">+<span id="LC535" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">zip</span><span class="p">(</span><span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">dataoffsets</span><span class="p">,</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">databytecounts</span><span class="p">)</span></span>
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536
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<pre style="margin: 0;">+<span id="LC536" class="line" lang="mosel"> <span class="p">...</span> <span class="p">):</span></span>
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537
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<pre style="margin: 0;">+<span id="LC537" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="n" style="color: #333;">seek</span><span class="p">(</span><span class="n" style="color: #333;">offset</span><span class="p">)</span></span>
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538
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<pre style="margin: 0;">+<span id="LC538" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">data</span> <span class="p">=</span> <span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="nb" style="color: #0086b3;">read</span><span class="p">(</span><span class="n" style="color: #333;">bytecount</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="539" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
539
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<pre style="margin: 0;">+<span id="LC539" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tile</span><span class="p">,</span> <span class="n" style="color: #333;">indices</span><span class="p">,</span> <span class="n" style="color: #333;">shape</span> <span class="p">=</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">decode</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">index</span><span class="p">,</span> <span class="n" style="color: #333;">jpegtables</span><span class="p">)</span></span>
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540
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<pre style="margin: 0;">+<span id="LC540" class="line" lang="mosel"> </span>
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477
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541
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<pre style="margin: 0;"> <span id="LC541" class="line" lang="mosel"><span class="n" style="color: #333;">Platform</span><span class="p">:</span> <span class="n" style="color: #333;">any</span></span>
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478
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542
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<pre style="margin: 0;"> <span id="LC542" class="line" lang="mosel"><span class="n" style="color: #333;">Classifier</span><span class="p">:</span> <span class="n" style="color: #333;">Development</span> <span class="n" style="color: #333;">Status</span> <span class="p">::</span> <span class="m" style="color: #099;">4</span> <span class="p">-</span> <span class="n" style="color: #333;">Beta</span></span>
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479
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543
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<pre style="margin: 0;"> <span id="LC543" class="line" lang="mosel"><span class="n" style="color: #333;">Classifier</span><span class="p">:</span> <span class="n" style="color: #333;">License</span> <span class="p">::</span> <span class="n" style="color: #333;">OSI</span> <span class="n" style="color: #333;">Approved</span> <span class="p">::</span> <span class="n" style="color: #333;">BSD</span> <span class="n" style="color: #333;">License</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="481" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="545" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -481,7 +545,6 @@ Classifier: Intended Audience :: Science/Research</td>
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481
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545
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<pre style="margin: 0;"> <span id="LC545" class="line" lang="mosel"><span class="n" style="color: #333;">Classifier</span><span class="p">:</span> <span class="n" style="color: #333;">Intended</span> <span class="n" style="color: #333;">Audience</span> <span class="p">::</span> <span class="n" style="color: #333;">Developers</span></span>
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482
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546
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<pre style="margin: 0;"> <span id="LC546" class="line" lang="mosel"><span class="n" style="color: #333;">Classifier</span><span class="p">:</span> <span class="n" style="color: #333;">Operating</span> <span class="nf" style="color: #900; font-weight: 600;">System</span> <span class="p">::</span> <span class="n" style="color: #333;">OS</span> <span class="n" style="color: #333;">Independent</span></span>
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483
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547
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<pre style="margin: 0;"> <span id="LC547" class="line" lang="mosel"><span class="n" style="color: #333;">Classifier</span><span class="p">:</span> <span class="n" style="color: #333;">Programming</span> <span class="n" style="color: #333;">Language</span> <span class="p">::</span> <span class="n" style="color: #333;">Python</span> <span class="p">::</span> <span class="m" style="color: #099;">3</span> <span class="p">::</span> <span class="n" style="color: #333;">Only</span></span>
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484
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<pre style="margin: 0;">-<span id="LC484" class="line" lang="mosel"><span class="n" style="color: #333;">Classifier</span><span class="p">:</span> <span class="n" style="color: #333;">Programming</span> <span class="n" style="color: #333;">Language</span> <span class="p">::</span> <span class="n" style="color: #333;">Python</span> <span class="p">::</span> <span class="m" style="color: #099;">3.6</span></span>
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485
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548
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<pre style="margin: 0;"> <span id="LC548" class="line" lang="mosel"><span class="n" style="color: #333;">Classifier</span><span class="p">:</span> <span class="n" style="color: #333;">Programming</span> <span class="n" style="color: #333;">Language</span> <span class="p">::</span> <span class="n" style="color: #333;">Python</span> <span class="p">::</span> <span class="m" style="color: #099;">3.7</span></span>
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486
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549
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<pre style="margin: 0;"> <span id="LC549" class="line" lang="mosel"><span class="n" style="color: #333;">Classifier</span><span class="p">:</span> <span class="n" style="color: #333;">Programming</span> <span class="n" style="color: #333;">Language</span> <span class="p">::</span> <span class="n" style="color: #333;">Python</span> <span class="p">::</span> <span class="m" style="color: #099;">3.8</span></span>
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487
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550
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<pre style="margin: 0;"> <span id="LC550" class="line" lang="mosel"><span class="n" style="color: #333;">Classifier</span><span class="p">:</span> <span class="n" style="color: #333;">Programming</span> <span class="n" style="color: #333;">Language</span> <span class="p">::</span> <span class="n" style="color: #333;">Python</span> <span class="p">::</span> <span class="m" style="color: #099;">3.9</span></span>
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<a href="https://salsa.debian.org/python-team/modules/tifffile/-/commit/2a5bc8b5fe528ce2d93f5d400258cbe8f2088e3a#6000dbe87c32bc435db544e8382e5f5b92e11e77"><strong>tifffile.egg-info/requires.txt</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,3 +3,4 @@ numpy>=1.15.1</td>
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">[all]</span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">imagecodecs>=2020.2.18</span>
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">matplotlib>=3.1</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">lxml</span></pre>
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<a href="https://salsa.debian.org/python-team/modules/tifffile/-/commit/2a5bc8b5fe528ce2d93f5d400258cbe8f2088e3a#0897a6ad59d4e84cc745635b88c27baf0a78bd92"><strong>tifffile/tifffile.py</strong></a>
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