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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/staden-io-lib">Debian Med / staden-io-lib</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/staden-io-lib/-/commit/2372e63d6cc8b4bb3aa692dc5c518656f0d6f75b">2372e63d</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-07-19T17:00:21+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Install io_lib_config.h to /usr/include/io_lib/
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/staden-io-lib/-/commit/916ee0d95543dc5ec49753411e06bceab42e64ee">916ee0d9</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-07-19T17:02:53+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add new symbols to debian/libstaden-read14.symbols
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/staden-io-lib/-/commit/fdf2507e0fb299000a9a74c7e47b332287051355">fdf2507e</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-07-19T17:24:47+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">forward patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/staden-io-lib/-/commit/fa0aad23ca50419383469ed5e4b8bbc3c4aed25d">fa0aad23</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-07-19T17:26:04+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">release 1.14.13-3
</pre>
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<h4>6 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#1c3c943da9bc261b2e336e5a5512a8c709c6d036">
debian/libstaden-read14.symbols
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<li class="file-stats">
<a href="#604a9f84ffdf5b169a9590aa84b499ae1d6bb224">
debian/patches/fix_fseeko.patch
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<li class="file-stats">
<a href="#d938218a50fb9da3cc3674238ca55a7d5def5915">
debian/patches/pathmax.patch
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<li class="file-stats">
<a href="#e4c19aed51618bf0c7ebd03189c67e422f84d4eb">
debian/patches/spelling
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/staden-io-lib/-/compare/496d0052f47cd81fc296de2a7f45e41316360d0d...fa0aad23ca50419383469ed5e4b8bbc3c4aed25d#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">staden</span><span class="p">-</span><span class="n" style="color: #333;">io</span><span class="p">-</span><span class="n" style="color: #333;">lib</span> <span class="p">(</span><span class="m" style="color: #099;">1.14.13</span><span class="p">-</span><span class="m" style="color: #099;">3</span><span class="p">)</span> <span class="n" style="color: #333;">unstable</span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="mosel"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Install</span> <span class="n" style="color: #333;">io_lib_config</span><span class="p">.</span><span class="n" style="color: #333;">h</span> <span class="k" style="font-weight: 600;">to</span> <span class="p">/</span><span class="n" style="color: #333;">usr</span><span class="p">/</span><span class="k" style="font-weight: 600;">include</span><span class="p">/</span><span class="n" style="color: #333;">io_lib</span><span class="p">/</span></span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Add</span> <span class="n" style="color: #333;">new</span> <span class="n" style="color: #333;">symbols</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">debian</span><span class="p">/</span><span class="n" style="color: #333;">libstaden</span><span class="p">-</span><span class="n" style="color: #333;">read14</span><span class="p">.</span><span class="n" style="color: #333;">symbols</span></span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="mosel"></span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="mosel"> <span class="p">--</span> <span class="n" style="color: #333;">Michael</span> <span class="n" style="color: #333;">R</span><span class="p">.</span> <span class="n" style="color: #333;">Crusoe</span> <span class="p"><</span><span class="n" style="color: #333;">crusoe</span><span class="p">@</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">></span> <span class="n" style="color: #333;">Sun</span><span class="p">,</span> <span class="m" style="color: #099;">19</span> <span class="n" style="color: #333;">Jul</span> <span class="m" style="color: #099;">2020</span> <span class="m" style="color: #099;">17</span><span class="p">:</span><span class="m" style="color: #099;">25</span><span class="p">:</span><span class="m" style="color: #099;">41</span> <span class="p">+</span><span class="m" style="color: #099;">0200</span></span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="mosel"></span>
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1
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="mosel"><span class="n" style="color: #333;">staden</span><span class="p">-</span><span class="n" style="color: #333;">io</span><span class="p">-</span><span class="n" style="color: #333;">lib</span> <span class="p">(</span><span class="m" style="color: #099;">1.14.13</span><span class="p">-</span><span class="m" style="color: #099;">2</span><span class="p">)</span> <span class="n" style="color: #333;">unstable</span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
</pre>
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2
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="mosel"></span>
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3
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<td class="diff-line-num new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Don</span><span class="s1" style="color: #d14;">'t run dh_missing in for arch independent builds. </span></span>
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<li id="1c3c943da9bc261b2e336e5a5512a8c709c6d036">
<a href="https://salsa.debian.org/med-team/staden-io-lib/-/compare/496d0052f47cd81fc296de2a7f45e41316360d0d...fa0aad23ca50419383469ed5e4b8bbc3c4aed25d#1c3c943da9bc261b2e336e5a5512a8c709c6d036"><strong>debian/libstaden-read14.symbols</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -57,6 +57,7 @@ libstaden-read.so.14 libstaden-read14 #MINVER#</td>
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57
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> bam_aux_iter@Base 1.14.12</span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> bam_aux_iter_full@Base 1.14.12</span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> bam_aux_size_vec@Base 1.14.12</span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext"> bam_aux_skip@Base 1.14.13</span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> bam_close@Base 1.14.12</span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> bam_construct_seq@Base 1.14.12</span>
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63
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> bam_copy@Base 1.14.12</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -130,6 +131,15 @@ libstaden-read.so.14 libstaden-read14 #MINVER#</td>
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130
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131
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="plaintext"> cram_codec_decoder2encoder@Base 1.14.12</span>
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131
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132
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<pre style="margin: 0;"> <span id="LC132" class="line" lang="plaintext"> cram_codec_to_id@Base 1.14.12</span>
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132
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133
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="plaintext"> cram_compress_block@Base 1.14.12</span>
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134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="plaintext"> cram_const_decode_byte@Base 1.14.13</span>
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135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="plaintext"> cram_const_decode_free@Base 1.14.13</span>
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136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="plaintext"> cram_const_decode_init@Base 1.14.13</span>
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137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="plaintext"> cram_const_decode_int@Base 1.14.13</span>
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138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="plaintext"> cram_const_decode_long@Base 1.14.13</span>
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139
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="plaintext"> cram_const_decode_size@Base 1.14.13</span>
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140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="plaintext"> cram_const_encode@Base 1.14.13</span>
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="plaintext"> cram_const_encode_init@Base 1.14.13</span>
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="plaintext"> cram_const_encode_store@Base 1.14.13</span>
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="plaintext"> cram_content_type2str@Base 1.14.12</span>
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> cram_deallocate_encoder@Base 1.14.12</span>
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145
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="plaintext"> cram_decode_TD@Base 1.14.12</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="155" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -145,6 +155,7 @@ libstaden-read.so.14 libstaden-read14 #MINVER#</td>
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145
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155
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<pre style="margin: 0;"> <span id="LC155" class="line" lang="plaintext"> cram_encode_compression_header@Base 1.14.12</span>
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<td class="diff-line-num old_line" data-linenumber="146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
146
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<td class="diff-line-num new_line" data-linenumber="156" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="plaintext"> cram_encode_container@Base 1.14.12</span>
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<td class="diff-line-num old_line" data-linenumber="147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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157
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<pre style="margin: 0;"> <span id="LC157" class="line" lang="plaintext"> cram_encode_slice_header@Base 1.14.12</span>
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<td class="diff-line-num new old_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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158
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="plaintext"> cram_encoder_get_fd@Base 1.14.13</span>
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<td class="diff-line-num old_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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159
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<pre style="margin: 0;"> <span id="LC159" class="line" lang="plaintext"> cram_encoder_init@Base 1.14.12</span>
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<td class="diff-line-num old_line" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
149
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<td class="diff-line-num new_line" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="plaintext"> cram_encoding2str@Base 1.14.12</span>
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<td class="diff-line-num old_line" data-linenumber="150" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
150
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<td class="diff-line-num new_line" data-linenumber="161" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
161
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<pre style="margin: 0;"> <span id="LC161" class="line" lang="plaintext"> cram_enque_compression_block@Base 1.14.12</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="256" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -256,6 +267,22 @@ libstaden-read.so.14 libstaden-read14 #MINVER#</td>
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<td class="diff-line-num old_line" data-linenumber="256" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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267
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<pre style="margin: 0;"> <span id="LC267" class="line" lang="plaintext"> cram_subexp_decode_init@Base 1.14.12</span>
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257
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268
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<pre style="margin: 0;"> <span id="LC268" class="line" lang="plaintext"> cram_uncompress_block@Base 1.14.12</span>
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258
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269
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<pre style="margin: 0;"> <span id="LC269" class="line" lang="plaintext"> cram_update_curr_slice@Base 1.14.12</span>
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270
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<pre style="margin: 0;">+<span id="LC270" class="line" lang="plaintext"> cram_varint_decode_free@Base 1.14.13</span>
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271
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<pre style="margin: 0;">+<span id="LC271" class="line" lang="plaintext"> cram_varint_decode_init@Base 1.14.13</span>
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272
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<pre style="margin: 0;">+<span id="LC272" class="line" lang="plaintext"> cram_varint_decode_int@Base 1.14.13</span>
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273
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<pre style="margin: 0;">+<span id="LC273" class="line" lang="plaintext"> cram_varint_decode_long@Base 1.14.13</span>
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274
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<pre style="margin: 0;">+<span id="LC274" class="line" lang="plaintext"> cram_varint_decode_sint@Base 1.14.13</span>
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275
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<pre style="margin: 0;">+<span id="LC275" class="line" lang="plaintext"> cram_varint_decode_size@Base 1.14.13</span>
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276
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<pre style="margin: 0;">+<span id="LC276" class="line" lang="plaintext"> cram_varint_decode_slong@Base 1.14.13</span>
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277
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<pre style="margin: 0;">+<span id="LC277" class="line" lang="plaintext"> cram_varint_encode_free@Base 1.14.13</span>
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<pre style="margin: 0;">+<span id="LC278" class="line" lang="plaintext"> cram_varint_encode_init@Base 1.14.13</span>
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279
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<pre style="margin: 0;">+<span id="LC279" class="line" lang="plaintext"> cram_varint_encode_int@Base 1.14.13</span>
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280
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<pre style="margin: 0;">+<span id="LC280" class="line" lang="plaintext"> cram_varint_encode_long@Base 1.14.13</span>
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<pre style="margin: 0;">+<span id="LC281" class="line" lang="plaintext"> cram_varint_encode_sint@Base 1.14.13</span>
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<pre style="margin: 0;">+<span id="LC282" class="line" lang="plaintext"> cram_varint_encode_slong@Base 1.14.13</span>
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<pre style="margin: 0;">+<span id="LC283" class="line" lang="plaintext"> cram_varint_encode_store@Base 1.14.13</span>
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284
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<pre style="margin: 0;">+<span id="LC284" class="line" lang="plaintext"> cram_varint_get_block@Base 1.14.13</span>
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285
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<pre style="margin: 0;">+<span id="LC285" class="line" lang="plaintext"> cram_write_SAM_hdr@Base 1.14.12</span>
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259
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<pre style="margin: 0;"> <span id="LC286" class="line" lang="plaintext"> cram_write_SAM_hdr@Base 1.14.12</span>
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<pre style="margin: 0;"> <span id="LC287" class="line" lang="plaintext"> cram_write_block@Base 1.14.12</span>
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261
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<pre style="margin: 0;"> <span id="LC288" class="line" lang="plaintext"> cram_write_container@Base 1.14.12</span>
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<li id="604a9f84ffdf5b169a9590aa84b499ae1d6bb224">
<a href="https://salsa.debian.org/med-team/staden-io-lib/-/compare/496d0052f47cd81fc296de2a7f45e41316360d0d...fa0aad23ca50419383469ed5e4b8bbc3c4aed25d#604a9f84ffdf5b169a9590aa84b499ae1d6bb224"><strong>debian/patches/fix_fseeko.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,6 +3,7 @@ Author: James Bonfield <jkb@sanger.ac.uk>,</td>
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="diff"><span class="p">Last-Update: Thu, 7 Dec 2017 18:09:16 +0000</span></span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"><span class="p">Bug-Debian: https://bugs.debian.org/876840</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"><span class="p">Origin: Upstream</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="p">Forwarded: not-needed</span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="p">Description: Attempt to fix FTBFS on non-i386 32bit for fseeko()</span></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="diff">--- staden-io-lib.orig/io_lib/bgzip.c</span>
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<a href="https://salsa.debian.org/med-team/staden-io-lib/-/compare/496d0052f47cd81fc296de2a7f45e41316360d0d...fa0aad23ca50419383469ed5e4b8bbc3c4aed25d#d938218a50fb9da3cc3674238ca55a7d5def5915"><strong>debian/patches/pathmax.patch</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="diff"><span class="p">Author: Thorsten Alteholz <debian@alteholz.de></span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"><span class="p">Description: define PATH_MAX in case it is not available</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="diff"> this is needed to compile on hurd_i386</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Forwarded: https://github.com/jkbonfield/io_lib/pull/33</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- staden-io-lib.orig/io_lib/cram_index.c</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ staden-io-lib/io_lib/cram_index.c</span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="p">@@ -76,6 +76,14 @@</span></span>
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<li id="e4c19aed51618bf0c7ebd03189c67e422f84d4eb">
<a href="https://salsa.debian.org/med-team/staden-io-lib/-/compare/496d0052f47cd81fc296de2a7f45e41316360d0d...fa0aad23ca50419383469ed5e4b8bbc3c4aed25d#e4c19aed51618bf0c7ebd03189c67e422f84d4eb"><strong>debian/patches/spelling</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="diff"><span class="p">From: Michael R. Crusoe <michael.crusoe@gmail.com></span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="diff"><span class="p">Subject: Spelling: independant→independent</span></span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">From: Michael R. Crusoe <crusoe@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Subject: Spelling fixes courtesy of Lintian</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Forwarded: https://github.com/jkbonfield/io_lib/pull/32</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- staden-io-lib.orig/io_lib/mach-io.c</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ staden-io-lib/io_lib/mach-io.c</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="p">@@ -81,7 +81,7 @@</span></span>
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<a href="https://salsa.debian.org/med-team/staden-io-lib/-/compare/496d0052f47cd81fc296de2a7f45e41316360d0d...fa0aad23ca50419383469ed5e4b8bbc3c4aed25d#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -32,7 +32,8 @@ override_dh_install-arch:</td>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> --movedev "debian/tmp/usr/include" usr \</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> --override s/libhtscodecs2-dev/libhtscodecs-dev/ \</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> debian/tmp/usr/lib/*/$(libpkg).so</span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> #</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> mkdir -p $(devpkg)/usr/include/io_lib/</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> cp $(CURDIR)/io_lib_config.h $(devpkg)/usr/include/io_lib/</span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> # make sure io_lib-config --libs will not return -pie (see #825461)</span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> find debian/*/usr/bin -name io_lib-config -exec sed -i -e 's/ *-fPIE//' -e 's/ *-pie//' \{\} \;</span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"></span>
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