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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/superreads">Debian Med / superreads</a>
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<h4>
Commits:
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<ul>
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<strong><a href="https://salsa.debian.org/med-team/superreads/-/commit/5b45a96376f85f3aae0db359fefe8f84060e20c1">5b45a963</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-07-22T09:13:04+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Opened issues upstream
</pre>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/superreads/-/commit/5b45a96376f85f3aae0db359fefe8f84060e20c1#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,29 +3,31 @@ superreads (0.3.2+git20130726.291de3c+dfsg-1) UNRELEASED; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * Initial release (Closes: #<bug>)</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> TODO:</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">In file included from /usr/include/c++/9/memory:80,</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> from src/create_k_unitigs_large_k.cc:23:</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> 53 | template<typename> class auto_ptr;</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> | ^~~~~~~~</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">src/create_k_unitigs_large_k.cc:352:8: error: ‘template<class> class std::auto_ptr’ is deprecated [-Werror=deprecated-declarations]</span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> 352 | std::auto_ptr<jellyfish::mapped_file> dbf;</span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> | ^~~~~~~~</span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext">In file included from /usr/include/c++/9/memory:80,</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> from src/create_k_unitigs_large_k.cc:23:</span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext">/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> 53 | template<typename> class auto_ptr;</span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> | ^~~~~~~~</span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext">src/create_k_unitigs_large_k.cc:383:10: error: ‘template<class> class std::auto_ptr’ is deprecated [-Werror=deprecated-declarations]</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> 383 | std::auto_ptr<std::ostream> output_ostream(open_output());</span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> | ^~~~~~~~</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext">In file included from /usr/include/c++/9/memory:80,</span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> from src/create_k_unitigs_large_k.cc:23:</span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext">/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here</span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> 53 | template<typename> class auto_ptr;</span>
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26
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> | ^~~~~~~~</span>
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27
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"></span>
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28
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> </span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> In file included from /usr/include/c++/9/memory:80,</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> from src/create_k_unitigs_large_k.cc:23:</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> /usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here</span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> 53 | template<typename> class auto_ptr;</span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> | ^~~~~~~~</span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> src/create_k_unitigs_large_k.cc:352:8: error: ‘template<class> class std::auto_ptr’ is deprecated [-Werror=deprecated-declarations]</span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> 352 | std::auto_ptr<jellyfish::mapped_file> dbf;</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> | ^~~~~~~~</span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> In file included from /usr/include/c++/9/memory:80,</span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> from src/create_k_unitigs_large_k.cc:23:</span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> /usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here</span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> 53 | template<typename> class auto_ptr;</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> | ^~~~~~~~</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> src/create_k_unitigs_large_k.cc:383:10: error: ‘template<class> class std::auto_ptr’ is deprecated [-Werror=deprecated-declarations]</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> 383 | std::auto_ptr<std::ostream> output_ostream(open_output());</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> | ^~~~~~~~</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> In file included from /usr/include/c++/9/memory:80,</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> from src/create_k_unitigs_large_k.cc:23:</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> /usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> 53 | template<typename> class auto_ptr;</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> | ^~~~~~~~</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> Reported upstream as:</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> https://github.com/alekseyzimin/SuperReads/issues/2</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> REMARK: This is a predependency for</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> https://github.com/alekseyzimin/masurca</span>
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31
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"></span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/superreads/-/commit/5b45a96376f85f3aae0db359fefe8f84060e20c1#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -20,6 +20,7 @@ Description: FIXME: predependency for masurca without description</td>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> FIXME: THIS IS NO DESCRIPTION OF THE PROVEDED CODE!</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> Masurca was pointing to this repository which has no sensible</span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> description. Upstream has to be asked about some purpose of</span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> this code!</span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"></span></pre>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> description.</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> Opened issue about missing description</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> https://github.com/alekseyzimin/SuperReads/issues/1</span></pre>
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