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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/cf294796cd266f8d68563fcf9b3b9770b9646afa">cf294796</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-07-27T13:47:46+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
</ul>
<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/cf294796cd266f8d68563fcf9b3b9770b9646afa#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Mon, 27 Jul 2020 <span class="idiff left right">01:42:03</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Mon, 27 Jul 2020 <span class="idiff left right">13:42:04</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source                        | Vote   |     Tasks                                           |                                 Tags                                 </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk                         |    1<span class="idiff left right">77</span> | {imaging,covid-19}                                  | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc                       |     9<span class="idiff left right">3</span> | {practice,covid-19,imaging}                         | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk                         |    1<span class="idiff left right">80</span> | {imaging,covid-19}                                  | </span>
</pre>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc                       |     9<span class="idiff left right">5</span> | {practice,covid-19,imaging}                         | </span>
</pre>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> orthanc-wsi                   |     45 | {his,laboratory,covid-19,imaging,practice,oncology} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> gdcm                          |     3<span class="idiff left right">7</span> | {imaging-dev}                                       | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> gdcm                          |     3<span class="idiff left right">4</span> | {imaging-dev}                                       | </span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> htsjdk                        |     25 | {bio-dev}                                           | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> dicom3tools                   |     21 | {imaging}                                           | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> dcm2niix                      |     20 | {imaging}                                           | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dicomscope                    |     20 | {imaging}                                           | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dcm2niix                      |     18 | {imaging}                                           | </span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> gnumed-server                 |     18 | {covid-19,practice}                                 | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> gdcm                          |     1<span class="idiff left right">4</span> | {covid-19,imaging}                                  | </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> gdcm                          |     1<span class="idiff left right">5</span> | {covid-19,imaging}                                  | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> ngs-sdk                       |     14 | {bio-dev}                                           | </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> gdcm                          |     1<span class="idiff left right">3</span> | {imaging-dev}                                       | </span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> insighttoolkit4               |     1<span class="idiff left right">3</span> | {imaging-dev}                                       | </span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> ngs-sdk                       |     1<span class="idiff left right">1</span> | {bio-dev}                                           | </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> gdcm                          |     1<span class="idiff left right">2</span> | {imaging-dev}                                       | </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> insighttoolkit4               |     1<span class="idiff left right">2</span> | {imaging-dev}                                       | </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> ngs-sdk                       |     1<span class="idiff left right">0</span> | {bio-dev}                                           | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> adun.app                      |      9 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> invesalius                    |      9 | {imaging}                                           | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> melting                       |      8 | {cloud,bio}                                         | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -26,22 +26,17 @@ Last-Update: Mon, 27 Jul 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> jebl2                         |      7 | {bio-dev}                                           | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> minc-tools                    |      7 | {imaging}                                           | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> orthanc-dicomweb              |      7 | {covid-19,imaging}                                  | </span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> vtk-dicom                     |      7 | {imaging}                                           | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> bart-view                     |      6 | {imaging}                                           | </span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"> biomaj3-cli                   |      6 | {cloud}                                             | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> fastlink                      |      6 | {bio,cloud}                                         | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> libminc                       |      6 | {imaging-dev}                                       | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> librg-utils-perl              |      6 | {bio}                                               | </span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> obitools                      |      6 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> openslide                     |      6 | {imaging}                                           | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> orthanc-mysql                 |      6 | {imaging}                                           | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> phyutility                    |      6 | {bio,cloud}                                         | </span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> rdp-readseq                   |      6 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> sibsim4                       |      6 | {bio,cloud}                                         | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> sigma-align                   |      6 | {bio,cloud,bio-phylogeny}                           | </span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext"> stacks                        |      6 | {bio}                                               | </span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="plaintext"> biomaj3-daemon                |      5 | {bio}                                               | </span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext"> dicompyler                    |      5 | {oncology}                                          | </span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> vtk-dicom                     |      6 | {imaging}                                           | </span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> biomaj3-cli                   |      5 | {cloud}                                             | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> ea-utils                      |      5 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> elastix                       |      5 | {imaging}                                           | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> king                          |      5 | {typesetting,imaging}                               | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="50" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -50,17 +45,20 @@ Last-Update: Mon, 27 Jul 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> mauve-aligner                 |      5 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> mipe                          |      5 | {cloud,bio}                                         | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> neobio                        |      5 | {cloud,bio}                                         | </span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> obitools                      |      5 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> orthanc-postgresql            |      5 | {imaging}                                           | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> piler                         |      5 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> plastimatch                   |      5 | {imaging}                                           | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> pymia                         |      5 | {imaging-dev}                                       | </span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="plaintext"> rdp-<span class="idiff left right">alignment</span>                 |      5 | {bio}                                               | </span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext"> rdp-<span class="idiff left right">readseq  </span>                 |      5 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> spread-phy                    |      5 | {bio-phylogeny,bio}                                 | </span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="plaintext"> <span class="idiff left right">transtermhp</span>                   |      5 | {bio}                                               | </span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> <span class="idiff left right">stacks     </span>                   |      5 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> alter-sequence-alignment      |      4 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> anfo                          |      4 | {cloud,bio}                                         | </span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"> biomaj3-daemon                |      4 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> biosig4c++                    |      4 | {physics,imaging}                                   | </span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> daligner                      |      4 | {bio,bio-ngs}                                       | </span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext"> dicompyler                    |      4 | {oncology}                                          | </span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> ecopcr                        |      4 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> embassy-domainatrix           |      4 | {cloud,bio}                                         | </span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> embassy-domalign              |      4 | {cloud,bio}                                         | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -77,6 +75,7 @@ Last-Update: Mon, 27 Jul 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> predictprotein                |      4 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> proalign                      |      4 | {bio,bio-phylogeny}                                 | </span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext"> probabel                      |      4 | {bio,cloud}                                         | </span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="plaintext"> rdp-alignment                 |      4 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> rdp-classifier                |      4 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> relion                        |      4 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> runcircos-gui                 |      4 | {bio}                                               | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="85" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="84" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> scythe                        |      4 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> squizz                        |      4 | {bio,cloud}                                         | </span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> staden                        |      4 | {bio}                                               | </span>
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="plaintext"> transtermhp                   |      4 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> treeview                      |      4 | {bio,bio-phylogeny}                                 | </span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"> ampliconnoise                 |      3 | {bio,cloud}                                         | </span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> beast2-mcmc                   |      3 | {bio}                                               | </span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="97" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext"> edtsurf                       |      3 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> fastml                        |      3 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> fsm-lite                      |      3 | {bio}                                               | </span>
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="plaintext"> ghmm                          |      3 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> harvest-tools                 |      3 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> jmodeltest                    |      3 | {bio-phylogeny,bio}                                 | </span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> libpal-java                   |      3 | {bio-dev}                                           | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="116" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -115,7 +116,6 @@ Last-Update: Mon, 27 Jul 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="plaintext"> seqmagick                     |      3 | {bio,covid-19}                                      | </span>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="plaintext"> sga                           |      3 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="plaintext"> sprai                         |      3 | {bio}                                               | </span>
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<pre style="margin: 0;">-<span id="LC118" class="line" lang="plaintext"> tnseq-transit                 |      3 | {bio,covid-19}                                      | </span>
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="plaintext"> tracetuner                    |      3 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="plaintext"> tvc                           |      3 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext"> acedb                         |      2 | {cloud,bio}                                         | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -134,14 +134,12 @@ Last-Update: Mon, 27 Jul 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"> delly                         |      2 | {covid-19,bio}                                      | </span>
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> estscan                       |      2 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> getdata                       |      2 | {bio}                                               | </span>
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<pre style="margin: 0;">-<span id="LC137" class="line" lang="plaintext"> ghmm                          |      2 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext"> hinge                         |      2 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="plaintext"> jellyfish1                    |      2 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="plaintext"> lamarc                        |      2 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="plaintext"> libctapimkt                   |      2 | {practice}                                          | </span>
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="plaintext"> multiqc                       |      2 | {bio,covid-19}                                      | </span>
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext"> murasaki                      |      2 | {bio}                                               | </span>
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<pre style="margin: 0;">-<span id="LC144" class="line" lang="plaintext"> ngs-sdk                       |      2 | {bio-dev}                                           | </span>
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="plaintext"> openslide                     |      2 | {imaging-dev}                                       | </span>
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> patman                        |      2 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="plaintext"> phast                         |      2 | {bio}                                               | </span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<pre style="margin: 0;"> <span id="LC163" class="line" lang="plaintext"> suitename                     |      2 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="plaintext"> surankco                      |      2 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="plaintext"> sweed                         |      2 | {bio}                                               | </span>
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<td class="diff-line-num new old_line" data-linenumber="168" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="plaintext"> tnseq-transit                 |      2 | {bio,covid-19}                                      | </span>
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<pre style="margin: 0;"> <span id="LC167" class="line" lang="plaintext"> velvetoptimiser               |      2 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="plaintext"> yaha                          |      2 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="plaintext"> zalign                        |      2 | {cloud,bio}                                         | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="plaintext"> libhmsbeagle                  |      1 | {bio-dev}                                           | </span>
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="plaintext"> libvistaio                    |      1 | {imaging-dev}                                       | </span>
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="plaintext"> logol                         |      1 | {bio}                                               | </span>
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="plaintext"> ngs-sdk                       |      1 | {bio-dev}                                           | </span>
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="plaintext"> opensurgsim                   |      1 | {imaging-dev}                                       | </span>
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="plaintext"> papyrus                       |      1 | {imaging-dev}                                       | </span>
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="plaintext"> plasmidseeker                 |      1 | {bio}                                               | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="249" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="249" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="plaintext"> pbseqlib                      |      0 | {bio-dev}                                           | </span>
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<pre style="margin: 0;"> <span id="LC250" class="line" lang="plaintext"> pilercr                       |      0 | {bio}                                               | </span>
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<pre style="margin: 0;"> <span id="LC251" class="line" lang="plaintext"> quicktree                     |      0 | {covid-19,bio-phylogeny,bio}                        | </span>
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<pre style="margin: 0;">-<span id="LC252" class="line" lang="plaintext"> relion                        |      0 | {bio-dev}                                           | </span>
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<td class="diff-line-num new_line" data-linenumber="252" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
252
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<pre style="margin: 0;"> <span id="LC252" class="line" lang="plaintext"> relion                        |      0 | {bio}                                               | </span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="254" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="253" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
253
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC253" class="line" lang="plaintext"> relion                        |      0 | {bio-dev}                                           | </span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="254" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
254
</td>
<td class="diff-line-num new_line" data-linenumber="254" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
254
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC254" class="line" lang="plaintext"> sambamba                      |      0 | {bio}                                               | </span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="255" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
255
</td>
<td class="diff-line-num new_line" data-linenumber="255" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
255
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC255" class="line" lang="plaintext"> sbmltoolbox                   |      0 | {bio-dev}                                           | </span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="256" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
256
</td>
<td class="diff-line-num new_line" data-linenumber="256" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
256
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC256" class="line" lang="plaintext"> seq-gen                       |      0 | {bio}                                               | </span>
</pre>
</td>
</tr>

</table>
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<li id="2654e31016bcee9bbe05d462121706cc8ed368af">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/cf294796cd266f8d68563fcf9b3b9770b9646afa#2654e31016bcee9bbe05d462121706cc8ed368af"><strong>outdated_med-packages.txt</strong></a>
The diff for this file was not included because it is too large.
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