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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e950206518bbd3ff62e8d388f8f140dc1d88846b">e9502065</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-07-29T13:44:46+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e950206518bbd3ff62e8d388f8f140dc1d88846b#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 29 Jul 2020 <span class="idiff left right">01</span>:42:04 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 29 Jul 2020 <span class="idiff left right">13</span>:42:04 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">5</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">4</span> | {practice,covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">3</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">2</span> | {practice,covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 44 | {his,laboratory,covid-19,imaging,practice,oncology} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> gdcm | 3<span class="idiff left right">3</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> gdcm | 3<span class="idiff left right">4</span> | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> htsjdk | 26 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> dicom3tools | 2<span class="idiff left right">1</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> dicom3tools | 2<span class="idiff left right">3</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dicomscope | 20 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> <span class="idiff left right">gnumed-server | 19 | {covid-19,practice}</span> | </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> <span class="idiff left right">dcm2niix | 18 | {imaging} </span> | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> gdcm | 1<span class="idiff left right">5</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> <span class="idiff left right">dcm2niix | 19 | {imaging} </span> | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> <span class="idiff left right">gnumed-server | 18 | {covid-19,practice}</span> | </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> gdcm | 1<span class="idiff left right">6</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> ngs-sdk | 14 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> gdcm | 1<span class="idiff left right">1</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> gdcm | 1<span class="idiff left right">2</span> | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> insighttoolkit4 | 10 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> invesalius | 10 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> ngs-sdk | 10 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> adun.app | 9 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> invesalius | 9 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> ngs-sdk | 9 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> psychopy | 9 | {psychology} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> melting | 8 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> minc-tools | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> orthanc-webviewer | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> pixelmed | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> biojava-live | 7 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> fastlink | 7 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> jebl2 | 7 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> <span class="idiff left right">minc-tools</span> | 7 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> <span class="idiff left right">openslide </span> | 7 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> orthanc-dicomweb | 7 | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> phyutility | 7 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> sibsim4 | 7 | {bio,cloud} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -36,7 +37,6 @@ Last-Update: Wed, 29 Jul 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> librg-utils-perl | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> mipe | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> obitools | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> openslide | 6 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> orthanc-mysql | 6 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> piler | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> stacks | 6 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -52,20 +52,18 @@ Last-Update: Wed, 29 Jul 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> embassy-domsearch | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> gatb-core | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> king | 5 | {typesetting,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="plaintext"> king-probe | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> libncl | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> mauve-aligner | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> neobio | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> orthanc-postgresql | 5 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> paraclu | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> perm | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="plaintext"> plastimatch | 5 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> probabel | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> pymia | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> rdp-readseq | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="plaintext"> repeatmasker-recon | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> runcircos-gui | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> saint | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC68" class="line" lang="plaintext"> salmon | 5 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> scythe | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> spread-phy | 5 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> squizz | 5 | {bio,cloud} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -76,7 +74,6 @@ Last-Update: Wed, 29 Jul 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> bio-rainbow | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> biosig4c++ | 4 | {physics,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> dascrubber | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="plaintext"> dazzdb | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext"> dicompyler | 4 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> dindel | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> edtsurf | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -88,16 +85,16 @@ Last-Update: Wed, 29 Jul 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> libminc | 4 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 4 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> maffilter | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC91" class="line" lang="plaintext"> mrs | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC92" class="line" lang="plaintext"> nutsqlite | 4 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> phybin | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="plaintext"> plastimatch | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> predictprotein | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> proalign | 4 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="plaintext"> radiant | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> rdp-alignment | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> rdp-classifier | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext"> relion | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC99" class="line" lang="plaintext"> repeatmasker-recon | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext"> rtax | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="plaintext"> salmon | 4 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> scrm | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> sprai | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="plaintext"> tracetuner | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -124,6 +121,8 @@ Last-Update: Wed, 29 Jul 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext"> metaphlan2 | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="plaintext"> mhap | 3 | {bio-ngs,bio} | </span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="plaintext"> microbegps | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="plaintext"> mrs | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="plaintext"> nutsqlite | 3 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="plaintext"> oscar | 3 | {data,practice,tools} | </span>
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="plaintext"> patman | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="plaintext"> pbdagcon | 3 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -134,7 +133,6 @@ Last-Update: Wed, 29 Jul 2020 01:42:04 +0000</td>
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133
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="plaintext"> pscan-chip | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"> pscan-tfbs | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> quorum | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC137" class="line" lang="plaintext"> radiant | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> rampler | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext"> samblaster | 3 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="plaintext"> segemehl | 3 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="274" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -274,5 +272,5 @@ Last-Update: Wed, 29 Jul 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC272" class="line" lang="plaintext"> shovill | -1 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC273" class="line" lang="plaintext"> sight | -1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC274" class="line" lang="plaintext"> yanagiba | -1 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC277" class="line" lang="plaintext">(<span class="idiff left right">301</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC275" class="line" lang="plaintext">(<span class="idiff left right">299</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC276" class="line" lang="plaintext"></span></pre>
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