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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/fast5-research">Debian Med / fast5-research</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/fast5-research/-/commit/edd92954cf0ec10c42e9c0d01a17534e13b5d91a">edd92954</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-08-04T09:06:26+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Section: python and spelling of "Python" in description
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</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/fast5-research/-/commit/49f598dbf0250f8d76b9fc04cd2193126e4b68d8">49f598db</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-08-04T09:06:50+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">No need to override dh_missing
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<li>
<strong><a href="https://salsa.debian.org/med-team/fast5-research/-/commit/8a8cc9b266d7d5cf5e439b1e36031f7ae5244283">8a8cc9b2</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-08-04T09:08:31+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Please add Description why the tests are disabled
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<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#7f43d18d76fb3facbefeb27ea6bbb6cfcba5e902">
debian/patches/disable_unit_test.patch
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/fast5-research/-/compare/8b0d3d379361176ab9a0cd6ab7392b03cc0aa834...8a8cc9b266d7d5cf5e439b1e36031f7ae5244283#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -38,20 +38,21 @@ Description: command line executable tools for python3-fast5-research</td>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext">Package: python3-fast5-research</span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext">Section: python</span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext">Depends: ${python3:Depends},</span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> ${misc:Depends},</span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> python3-h5py,</span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> python3-numpy,</span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> python3-progressbar,</span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> python3-pysam</span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="plaintext">Description: <span class="idiff left right">p</span>ython fast5 reading and writing functionality provided by ONT Research</span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext">Description: <span class="idiff left right">P</span>ython fast5 reading and writing functionality provided by ONT Research</span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> This package comprises an API to HDF containers used by the research</span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> groups within Oxford Nanopore Technologies. It complements the official</span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> API. Reading and writing of read files can be accomplished as well as</span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> reading of bulk .fast5 files. It reads interface bulk .fast5 files for</span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> extracting reads, channel states, voltage, etcetera.</span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="plaintext"> This package contains API and <span class="idiff left right">p</span>ython3 library.</span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> This package contains API and <span class="idiff left right">P</span>ython3 library.</span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext">Package: fast5-research-doc</span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext">Architecture: all</span>
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<a href="https://salsa.debian.org/med-team/fast5-research/-/compare/8b0d3d379361176ab9a0cd6ab7392b03cc0aa834...8a8cc9b266d7d5cf5e439b1e36031f7ae5244283#7f43d18d76fb3facbefeb27ea6bbb6cfcba5e902"><strong>debian/patches/disable_unit_test.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Author: Shayan Doust</span></span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Last-Update: 2020-07-26 17:35:48 +0100</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Description: FIXME</span></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"></span>
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1
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff">--- fast5-research.orig/fast5_research/test/test_fast5_bulk.py</span>
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2
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ fast5-research/fast5_research/test/test_fast5_bulk.py</span></span>
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3
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="p">@@ -97,10 +97,10 @@</span></span>
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<a href="https://salsa.debian.org/med-team/fast5-research/-/compare/8b0d3d379361176ab9a0cd6ab7392b03cc0aa834...8a8cc9b266d7d5cf5e439b1e36031f7ae5244283#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -24,5 +24,3 @@ ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</td>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> PYTHONPATH=$(CURDIR) nosetests3 -s -v \</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> --exclude=test_fast5_basecalling_and_mapping.py # Requires unavailable analysis data</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext">endif</span></pre>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext">override_dh_missing:</span></pre>
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