<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en">
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>



<style>img {
max-width: 100%; height: auto;
}
</style>
</head>
<body>
<div class="content">

<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/trinityrnaseq">Debian Med / trinityrnaseq</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/13d005c58846468d2ae52a60af814aad0bf1900c">13d005c5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-05T12:47:31+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix gcc-10 build issue
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/ece6e42c36b8f3e162c471a9f74df41a81c4967b">ece6e42c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-05T12:56:19+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/c7463370d21d5943f514a684a520471bdadbb87d">c7463370</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-05T12:56:34+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.11.0+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/f3d13e15524ba993330725835fe7b512d4c65de2">f3d13e15</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-05T13:02:44+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.11.0+dfsg'

Update to upstream version '2.11.0+dfsg'
with Debian dir 60247192462fedb615822b8e49e12b043c309e64</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/ec6e4917a89146463ecc06fc8ec12de9f7342a44">ec6e4917</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-05T13:02:46+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 13
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/483b0895dbc28816a4e60cc8caed2c6b9e07c1ef">483b0895</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-05T13:33:23+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adapt patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/4f6ba3fef5590cc569798000b5d5422bdf309e2d">4f6ba3fe</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-05T13:40:12+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Review Files-Excluded for moved and removed files as well as new binary *.jars
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/7150f569c2c7728332eaa7303a8cbe8a17c1d1e9">7150f569</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-05T13:40:43+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove redundant debian/gbp.conf
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/1596529732f05b5e294e4c79b5cdf3309a7b354f">15965297</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-05T13:50:46+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.11.0+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/26fc17296f2e061e57f3a5d1b843d206d002a4ba">26fc1729</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-05T13:55:05+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.11.0+dfsg'

Update to upstream version '2.11.0+dfsg'
with Debian dir e608f7e9ef67b323c97fab82f1d95cb9142fcc24</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/bd24bf6916468c05c42bd0ff133f696d4822c7e0">bd24bf69</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-05T14:55:47+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove __pycache__ from installed package
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/915d88837b8daafbc8bd16558831ec50d51fa2fc">915d8883</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-05T15:00:45+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">More Python3 porting needed
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/f14d07c716e3d42eb235fe555e88ac0fa75c4771">f14d07c7</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-05T15:01:05+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove more binary code from upstream source
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/0d1d8e6c77efae8722a9fae572e023fdd438d83c">0d1d8e6c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-05T15:49:37+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.11.0+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/449ca8fac696787853db32b42c24dea1d72b15a8">449ca8fa</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-05T15:53:52+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.11.0+dfsg'

Update to upstream version '2.11.0+dfsg'
with Debian dir 8971919319e287bc0b6c7a7ce583e6d7f5b260ec</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/0d455157ba524208cb84b6d9b8d17a1756d6ce40">0d455157</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-05T16:31:12+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">FIXME: seqtk-trinity is missing and thus autopkgtest fails
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#7445606fbf8f3683cd42bdc54b05d7a0bc2dfc44">
.gitmodules
</a>
</li>
<li class="file-stats">
<a href="#c8f064a997862c81dcee2544e28c7e36e11ba0a6">
Analysis/DifferentialExpression/PtR
</a>
</li>
<li class="file-stats">
<a href="#0c138990846c52c002f77f524cf63e8385cad532">
Analysis/SuperTranscripts/Trinity_gene_splice_modeler.py
</a>
</li>
<li class="file-stats">
<a href="#86a7c48be34304904f15565ead2812d043dcf5ce">
<span class="new-file">
+
Analysis/SuperTranscripts/pylib/__pycache__/Compact_graph_partial.cpython-36.pyc
</span>
</a>
</li>
<li class="file-stats">
<a href="#967b6b98c94224e85fbfa02eea86ecc43f9cd06a">
<span class="new-file">
+
Analysis/SuperTranscripts/pylib/__pycache__/Compact_graph_pruner.cpython-36.pyc
</span>
</a>
</li>
<li class="file-stats">
<a href="#1590acd6043545c72130f2c51023c4769aad2b49">
<span class="new-file">
+
Analysis/SuperTranscripts/pylib/__pycache__/Compact_graph_whole.cpython-36.pyc
</span>
</a>
</li>
<li class="file-stats">
<a href="#d3cc54e45938e4ac136c5e5d555f6ba8ef47995c">
<span class="new-file">
+
Analysis/SuperTranscripts/pylib/__pycache__/DP_matrix.cpython-36.pyc
</span>
</a>
</li>
<li class="file-stats">
<a href="#1ee380407b6cbf3dadfd9f7092c25f39ec36300e">
<span class="new-file">
+
Analysis/SuperTranscripts/pylib/__pycache__/Gene_splice_modeler.cpython-36.pyc
</span>
</a>
</li>
<li class="file-stats">
<a href="#aab3306a68f18934b3bd03f0d8a8cc44ee1751dd">
<span class="new-file">
+
Analysis/SuperTranscripts/pylib/__pycache__/GraphCycleException.cpython-36.pyc
</span>
</a>
</li>
<li class="file-stats">
<a href="#28017ea444fd5262fe4cbc8146758be9daa532db">
<span class="new-file">
+
Analysis/SuperTranscripts/pylib/__pycache__/Node_alignment.cpython-36.pyc
</span>
</a>
</li>
<li class="file-stats">
<a href="#de4fb0a4c2c20eb64a89ae90d508bd7497323bad">
<span class="new-file">
+
Analysis/SuperTranscripts/pylib/__pycache__/Node_path.cpython-36.pyc
</span>
</a>
</li>
<li class="file-stats">
<a href="#e25e2cf50977e85d9e0d78d4c8eb233576aa05bd">
<span class="new-file">
+
Analysis/SuperTranscripts/pylib/__pycache__/Splice_model_refiner.cpython-36.pyc
</span>
</a>
</li>
<li class="file-stats">
<a href="#18e39aefeb534542ee4cca73c9ba4769564c38a4">
<span class="new-file">
+
Analysis/SuperTranscripts/pylib/__pycache__/TGLOBALS.cpython-36.pyc
</span>
</a>
</li>
<li class="file-stats">
<a href="#6defba3741511f2bd94c28be3c2fac953785d8e3">
<span class="new-file">
+
Analysis/SuperTranscripts/pylib/__pycache__/TGraph.cpython-36.pyc
</span>
</a>
</li>
<li class="file-stats">
<a href="#1bc5d0f50fa2014d2520807d77636a6d7e50a88d">
<span class="new-file">
+
Analysis/SuperTranscripts/pylib/__pycache__/TNode.cpython-36.pyc
</span>
</a>
</li>
<li class="file-stats">
<a href="#015e47360ea3b64200ad473461d92ce78694d18a">
<span class="new-file">
+
Analysis/SuperTranscripts/pylib/__pycache__/Topological_sort.cpython-36.pyc
</span>
</a>
</li>
<li class="file-stats">
<a href="#9833ab8fb874752e27b92dfef8b87d6ccb71b31b">
<span class="new-file">
+
Analysis/SuperTranscripts/pylib/__pycache__/Trinity_fasta_parser.cpython-36.pyc
</span>
</a>
</li>
<li class="file-stats">
<a href="#bf4dfa45080ca594faea83081dea86fbad274320">
<span class="new-file">
+
Analysis/SuperTranscripts/pylib/__pycache__/Trinity_util.cpython-36.pyc
</span>
</a>
</li>
<li class="file-stats">
<a href="#9b4b55d836a6ab82ee7e709a6a092190c650a98a">
<span class="new-file">
+
Butterfly/Butterfly/README.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#a0f89fef8779b291f0cbd827a7425e68a0178580">
<span class="new-file">
+
Butterfly/Butterfly/src/.classpath
</span>
</a>
</li>
<li class="file-stats">
<a href="#73da4c93d5430e631f7dd8e9d499ebd8945ac100">
<span class="new-file">
+
Butterfly/Butterfly/src/.err
</span>
</a>
</li>
<li class="file-stats">
<a href="#f6152c4dd6e081c6b63fc6a9369406115088980d">
<span class="new-file">
+
Butterfly/Butterfly/src/.project
</span>
</a>
</li>
<li class="file-stats">
<a href="#0a2b6e01eb85161cfccecb8f67ccbffd7d7aaea7">
<span class="new-file">
+
Butterfly/Butterfly/src/.settings/org.eclipse.jdt.core.prefs
</span>
</a>
</li>
<li class="file-stats">
<a href="#51ba3049d41a6728fe29db96d43a2d1576e62430">
<span class="new-file">
+
Butterfly/Butterfly/src/README
</span>
</a>
</li>
<li class="file-stats">
<a href="#208edfe168f071e85282846046fae9af90871b7d">
<span class="new-file">
+
Butterfly/Butterfly/src/_t_seqA.fa
</span>
</a>
</li>
<li class="file-stats">
<a href="#69f165d1a1a3e1392da39081b066da6bc8640282">
<span class="new-file">
+
Butterfly/Butterfly/src/_t_seqB.fa
</span>
</a>
</li>
<li class="file-stats">
<a href="#d2ad6a4f5dee17b7c68e5fbb5d82cede491d453b">
<span class="new-file">
+
Butterfly/Butterfly/src/build.xml
</span>
</a>
</li>
<li class="file-stats">
<a href="#b913e027407cbc4855cb0c44e3e36361f3cd297e">
<span class="new-file">
+
Butterfly/Butterfly/src/runExample.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#67ef9ee3c51a79a75be3e4c9541f93450cbd638f">
<span class="new-file">
+
Butterfly/Butterfly/src/run_NWalign.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#e670df41f7701dc4a021c109b01da227c25bf310">
<span class="new-file">
+
Butterfly/Butterfly/src/run_butterfly_nonJar.sh
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>

</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #777;">

<br>
<a href="https://salsa.debian.org/med-team/trinityrnaseq/-/compare/f915893af3ba3736372603cfb5865d52728bb98c...0d455157ba524208cb84b6d9b8d17a1756d6ce40">View it on GitLab</a>.
<br>
You're receiving this email because of your account on salsa.debian.org.
If you'd like to receive fewer emails, you can
adjust your notification settings.



</p>
</div>
</body>
</html>