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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/igor">Debian Med / igor</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/igor/-/commit/87f4a27f5c2ee96e91b33e5fe12a93b1c166751a">87f4a27f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-05T18:14:03+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix gcc-10 build
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igor/-/commit/deff76d5d9507f1661716f88682d95765350758f">deff76d5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-05T18:14:17+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 13
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igor/-/commit/251871a3f57dc425610acdec05049d5765a03fb1">251871a3</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-08-05T18:46:08+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Do not use outdated libcblas any more
</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/igor/-/commit/bdcae5abb627fbff3d588eb3e27187a5f3473f84">bdcae5ab</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-05T18:53:10+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Team-Upload to unstable
</pre>
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<h4>5 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#fac0c62d9b907e6be145e02cf3d336278225d633">
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+
debian/patches/fix-gcc-10.patch
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<li class="file-stats">
<a href="#191af0bd1ca7d3c2b475d9fb7d6a275599a1cae6">
debian/patches/get_autoreconf_to_work.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/igor/-/compare/8293fd8c044d3dc73def5d92685a224fd9ead547...bdcae5abb627fbff3d588eb3e27187a5f3473f84#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">igor (1.4.0+dfsg-2) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team upload.</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Fix gcc-10 build</span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> Closes: #966868</span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * debhelper-compat 13 (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Do not use outdated libcblas any more</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Wed, 05 Aug 2020 18:37:57 +0200</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">igor (1.4.0+dfsg-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> * Team Upload.</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/igor/-/compare/8293fd8c044d3dc73def5d92685a224fd9ead547...bdcae5abb627fbff3d588eb3e27187a5f3473f84#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,11 +3,10 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Uploaders: Steffen Moeller <moeller@debian.org></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Section: science</span>
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<td class="diff-line-num new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 1<span class="idiff left right">2</span>),</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 1<span class="idiff left right">3</span>),</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> libjemalloc-dev,</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> libgsl-dev,</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> libatlas-base-dev | libcblas-dev</span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"># #Build-Depends-Indep: debhelper (>= 11),</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> libblas-dev | libblas.so</span>
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11
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"># doxygen</span>
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"># asciidoc,</span>
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13
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">Standards-Version: 4.5.0</span>
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<li id="fac0c62d9b907e6be145e02cf3d336278225d633">
<a href="https://salsa.debian.org/med-team/igor/-/compare/8293fd8c044d3dc73def5d92685a224fd9ead547...bdcae5abb627fbff3d588eb3e27187a5f3473f84#fac0c62d9b907e6be145e02cf3d336278225d633"><strong>debian/patches/fix-gcc-10.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: Fix gcc-10 build</span></span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Bug-Debian: https://bugs.debian.org/966868</span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Last-Update: Wed, 05 Aug 2020 18:12:57 +0200</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff">--- a/igor_src/ExtractFeatures.cpp</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/igor_src/ExtractFeatures.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="p">@@ -23,6 +23,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> *</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> */</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#include <string></span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> #include "ExtractFeatures.h"</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> ExtractFeatures::ExtractFeatures() {</span></pre>
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<li id="191af0bd1ca7d3c2b475d9fb7d6a275599a1cae6">
<a href="https://salsa.debian.org/med-team/igor/-/compare/8293fd8c044d3dc73def5d92685a224fd9ead547...bdcae5abb627fbff3d588eb3e27187a5f3473f84#191af0bd1ca7d3c2b475d9fb7d6a275599a1cae6"><strong>debian/patches/get_autoreconf_to_work.patch</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="44" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="44" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -44,7 +44,7 @@ Description: Work around issues with creating manpage, use Debian packaged libs</td>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-igor_CXXFLAGS = -I$(srcdir)/../libs/jemalloc/include/jemalloc -I$(srcdir)/../libs/gsl_sub $(OPENMP_CXXFLAGS) -DIGOR_DATA_DIR=\"$(pkgdatadir)\"</span></span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+igor_LDADD = -lgsl -l<span class="idiff left right">c</span>blas -ljemalloc -lpthread -ldl #Need to link pthread since it is not statically linked with jemalloc (for now)</span></span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+igor_LDADD = -lgsl -lblas -ljemalloc -lpthread -ldl #Need to link pthread since it is not statically linked with jemalloc (for now)</span></span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+igor_CXXFLAGS = -I/usr/include/jemalloc -I/usr/include/gsl $(OPENMP_CXXFLAGS) -DIGOR_DATA_DIR=\"$(pkgdatadir)\"</span></span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="diff"> </span>
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<a href="https://salsa.debian.org/med-team/igor/-/compare/8293fd8c044d3dc73def5d92685a224fd9ead547...bdcae5abb627fbff3d588eb3e27187a5f3473f84#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">get_autoreconf_to_work.patch</span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">inline_fix.patch</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">fix-gcc-10.patch</span></pre>
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