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GitLab

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<h3>

Étienne Mollier pushed to branch upstream

at <a href="https://salsa.debian.org/med-team/biobambam2">Debian Med / biobambam2</a>

</h3>

<h4>

Commits:

</h4>

<ul>

<li>

<strong><a href="https://salsa.debian.org/med-team/biobambam2/-/commit/04cab22db968f19dfc695a2a4d74a46366c28de3">04cab22d</a></strong>

<div>

<span>by Étienne Mollier</span>

<i>at 2020-08-08T12:14:01+02:00</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.0.173+ds</pre>

</li>

</ul>

<h4>30 changed files:</h4>

<ul>

<li class="file-stats">

<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">

.gitignore

</a>

</li>

<li class="file-stats">

<a href="#00fe7828d56d7a3ee4030d6cea057cf13f50e70c">

ChangeLog

</a>

</li>

<li class="file-stats">

<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">

configure.ac

</a>

</li>

<li class="file-stats">

<a href="#67e794015a01b8816bd16290e5f8538236da8245">

src/Makefile.am

</a>

</li>

<li class="file-stats">

<a href="#3246c107ecd8bac08d2aad7cede823b6e17e7d48">

src/biobambam2/DepthIntervalGetter.hpp

</a>

</li>

<li class="file-stats">

<a href="#3abc0eb6fc0888ed1322bffb52b176ba0eda906b">

src/biobambam2/Reference.hpp

</a>

</li>

<li class="file-stats">

<a href="#5362b7f1ffa3db3aa1109e87400c9714d7ee5015">

src/programs/bam12auxmerge.cpp

</a>

</li>

<li class="file-stats">

<a href="#f6d6a44a2d4c9132f5653efa0c6bda8746270a3f">

src/programs/bam12split.cpp

</a>

</li>

<li class="file-stats">

<a href="#3357db5c537ef273c0208887b5f0500fde233036">

src/programs/bam12strip.cpp

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<li class="file-stats">

<a href="#8a2d87669395109135517772fb44c7cf071305d8">

src/programs/bamadapterclip.cpp

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<li class="file-stats">

<a href="#9f34177e22d1a42ed848da74576ef26cd611601f">

src/programs/bamadapterfind.cpp

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<li class="file-stats">

<a href="#990912a6f474aa172848e6abf56b5f9b59dfb52c">

src/programs/bamalignfrac.cpp

</a>

</li>

<li class="file-stats">

<a href="#269dd126a07ef4d2aae3e8585d3b9f7d7c6d7365">

src/programs/bamauxmerge.cpp

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</li>

<li class="file-stats">

<a href="#3b06d7c0df977f4386ad9e6694957bfbc058149f">

src/programs/bamauxmerge2.cpp

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</li>

<li class="file-stats">

<a href="#e5cb3e3a7ae5d93708da3cbc60a7378a64d1183f">

src/programs/bamauxsort.cpp

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<li class="file-stats">

<a href="#f9f9c77c459bb9d5a5063ec06c9ae07ef19dd14e">

src/programs/bamcat.cpp

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<li class="file-stats">

<a href="#daab15ce9bd857fd0f8981fd449a7fc75074ab61">

src/programs/bamclipXT.cpp

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</li>

<li class="file-stats">

<a href="#1d672047ff1ab6cde90a5ed5bfa905a7c62015f3">

src/programs/bamclipreinsert.cpp

</a>

</li>

<li class="file-stats">

<a href="#5393ade310e7cd11929979d7b18ab8cc6860e027">

src/programs/bamcollate2.cpp

</a>

</li>

<li class="file-stats">

<a href="#731c8a82cbe64a38ffc549ef39ae18a3c5470e9a">

src/programs/bamconsensus.cpp

</a>

</li>

<li class="file-stats">

<a href="#799ccd6d1b17df6f1fa8cf1520762494fdec598e">

src/programs/bamdownsamplerandom.cpp

</a>

</li>

<li class="file-stats">

<a href="#c9c0c569019a22274ccc2bccf676f97a81067000">

src/programs/bamexondepth.cpp

</a>

</li>

<li class="file-stats">

<a href="#f05e1d6269cc857130938e09a2cd0a6e641cd838">

src/programs/bamexplode.cpp

</a>

</li>

<li class="file-stats">

<a href="#3c070c184fbeb5f85e1179e8fc221a69aadebe2e">

src/programs/bamexploderef.cpp

</a>

</li>

<li class="file-stats">

<a href="#e15d60f31a4cd0cd24c8991d7bb71272ff213a0a">

src/programs/bamexploderg.cpp

</a>

</li>

<li class="file-stats">

<a href="#69564be010fba721dc185239c85c9d18ebefad83">

src/programs/bamfastcat.cpp

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</li>

<li class="file-stats">

<a href="#9ca0526ff4db305ca2894ea321d222b50b929708">

src/programs/bamfastexploderef.cpp

</a>

</li>

<li class="file-stats">

<a href="#309ee1cabd82915dbfa35666ebc065bfb115dbac">

src/programs/bamfeaturecount.cpp

</a>

</li>

<li class="file-stats">

<a href="#eb489eed736b4cec8184123215d315f932f5c90c">

src/programs/bamfillquery.cpp

</a>

</li>

<li class="file-stats">

<a href="#0133b710a206f6be1fc0487513bc69d323fbbaa6">

src/programs/bamfilter.cpp

</a>

</li>

</ul>

<h5>The diff was not included because it is too large.</h5>

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