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<h3>
Steffen Möller pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/hisat2">Debian Med / hisat2</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/hisat2/-/commit/3ed2223f34f4a86fd2d3b33c6cd4b9b7bbfb4781">3ed2223f</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-08-10T16:06:18+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.2.1</pre>
</li>
</ul>
<h4>16 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#b33892fbddeffc3368077b4904ad0b3d562a7312">
VERSION
</a>
</li>
<li class="file-stats">
<a href="#97d4bb640456afa26c0dfb63ca734516e440c32b">
docs/_data/download-binary.yml
</a>
</li>
<li class="file-stats">
<a href="#18926ed6f49d399fb27c14bb8bd2c17fe8c9b7ed">
docs/_pages/hisat2.md
</a>
</li>
<li class="file-stats">
<a href="#aa8abd87526f600f29e128e33b53bd678c546534">
gfm.h
</a>
</li>
<li class="file-stats">
<a href="#26cfe82369374d64159c5cbaf47f6e785bd071ee">
hisat2
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</li>
<li class="file-stats">
<a href="#e48066653bf9e1d5e9479468043a65af24a2eaeb">
hisat2.cpp
</a>
</li>
<li class="file-stats">
<a href="#9f847d57bd1a3c83b26b32446139899ce4956ad4">
hisat2_extract_exons.py
</a>
</li>
<li class="file-stats">
<a href="#96b0d9084edf37cc42967493c60aa6690183f549">
hisat2_extract_snps_haplotypes_UCSC.py
</a>
</li>
<li class="file-stats">
<a href="#6c52a3c47af3471a690d33f2c783ffffcc00e5d4">
hisat2_extract_snps_haplotypes_VCF.py
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<li class="file-stats">
<a href="#f729b6c712a332d397c5d89eba3e025c997b2651">
hisat2_extract_splice_sites.py
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<li class="file-stats">
<a href="#7c26f85026ad7331ead0d05c352f4b729c176e37">
hisat2_read_statistics.py
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</li>
<li class="file-stats">
<a href="#dc3ca82d6dd8fa20b434a4c6af757dc050e3fe35">
hisat2_simulate_reads.py
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</li>
<li class="file-stats">
<a href="#9e1eb7c1115590acc7373822e2c3ce81f4826ded">
<span class="deleted-file">
−
hisatgenotype.py
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</a>
</li>
<li class="file-stats">
<a href="#b273fe09122a335bdf51b1390a97ea55693ada97">
<span class="deleted-file">
−
hisatgenotype_build_genome.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#9aaa7d3b8db558ca4641ce354951a7a734c26511">
<span class="deleted-file">
−
hisatgenotype_extract_reads.py
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</a>
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<h5>The diff was not included because it is too large.</h5>
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—
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