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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/hmmer2">Debian Med / hmmer2</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/hmmer2/-/commit/bcb860c8311295f93937cce5c44bd40dba06bd3d">bcb860c8</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-12T11:43:46+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Do not Build-Depend pvm-dev and disable pvm in configure
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hmmer2/-/commit/62f9ffaf49336147162ebd7a52b184f15ff0b86f">62f9ffaf</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-12T11:44:16+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hmmer2/-/commit/b9b90f3b641cd24eff0c7b2799b13770e19fc215">b9b90f3b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-12T11:44:16+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 13
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hmmer2/-/commit/6b2d6de6eee1ecb680ed7eefda383640fef12ef1">6b2d6de6</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-12T11:44:20+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Remove trailing whitespace in debian/changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hmmer2/-/commit/da3a236cb691871cd7e5652f5d0c882682919146">da3a236c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-12T11:44:20+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hmmer2/-/commit/1e863b1c191b7de841a5242c60540ea0124db0fa">1e863b1c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-12T11:44:21+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hmmer2/-/commit/2b27b7e0f2eae3525e8f96e22c3794ce6257a148">2b27b7e0</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-12T11:44:30+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Repository, Repository-Browse.
Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hmmer2/-/commit/ecdc1857590969d13d036c3177e7a96a180ec7b4">ecdc1857</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-12T11:44:30+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright).
Changes-By: lintian-brush
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hmmer2/-/commit/43194d908114dc7f1ec1dbeb6877d05ea10cdc6d">43194d90</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-12T11:45:47+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4>6 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">
−
debian/compat
</span>
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<span class="new-file">
+
debian/salsa-ci.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/hmmer2/-/compare/795e6a04a8d4663298a2ed85e6a7404088bb1c0c...43194d908114dc7f1ec1dbeb6877d05ea10cdc6d#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">hmmer2 (2.5j+dfsg-1) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">hmmer2 (2.5j+dfsg-1) <span class="idiff left right">unstable</span>; urgency=medium</span>
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<td class="diff-line-num new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * Development of hmmer2 seems to be continued at Github</span>
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> https://github.com/MichiganTech/hmmer -> point watch file to this</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -10,8 +10,16 @@ hmmer2 (2.5j+dfsg-1) UNRELEASED; urgency=medium</td>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> * Drop hmmer2-pvm package</span>
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<td class="diff-line-num old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> * libhmmer2-dev package drops static lib (this is not automatically</span>
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<td class="diff-line-num old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> generated by upstream any more)</span>
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<td class="diff-line-num new old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> * Standards-Version: 4.5.0 (routine-update)</span>
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<td class="diff-line-num new old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> * debhelper-compat 13 (routine-update)</span>
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<td class="diff-line-num new old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> * Remove trailing whitespace in debian/changelog (routine-update)</span>
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<td class="diff-line-num new old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> * Add salsa-ci file (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> * Rules-Requires-Root: no (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> * Set upstream metadata fields: Repository, Repository-Browse.</span>
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<td class="diff-line-num new old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> * Remove obsolete field Name from debian/upstream/metadata (already present in</span>
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<td class="diff-line-num new old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> machine-readable debian/copyright).</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> <span class="idiff left right">Fri, 11 Jan 2019 15:43:07 +01</span>00</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> <span class="idiff left right">Wed, 12 Aug 2020 11:44:30 +02</span>00</span>
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15
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">hmmer2 (2.3.2+dfsg-6) unstable; urgency=medium</span>
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17
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25
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -136,8 +144,8 @@ hmmer2 (2.3.2-7) unstable; urgency=low</td>
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136
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> - Removed myself from the Uploaders.</span>
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137
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="plaintext"> - Removed obsolete DM-Upload-Allowed field.</span>
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<td class="diff-line-num old_line" data-linenumber="138" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
138
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="plaintext"> - Use canonical VCS URLs.</span>
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<td class="diff-line-num old old_line" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
139
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<pre style="margin: 0;">-<span id="LC139" class="line" lang="plaintext"> - Normalised using config-model-edit.<span class="idiff left right"> </span></span>
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140
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<pre style="margin: 0;">-<span id="LC140" class="line" lang="plaintext"> - Build-depend on libperl4-corelibs-perl (Closes: #730921).<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="plaintext"> - Normalised using config-model-edit.</span>
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="plaintext"> - Build-depend on libperl4-corelibs-perl (Closes: #730921).</span>
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141
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="plaintext"> * Conforms with Policy 3.9.5.</span>
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="plaintext"> -- Charles Plessy <plessy@debian.org> Sun, 01 Dec 2013 09:26:43 +0900</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -159,16 +167,16 @@ hmmer2 (2.3.2-6) unstable; urgency=low</td>
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<pre style="margin: 0;"> <span id="LC167" class="line" lang="plaintext"> hmmer (>=3) in wheezy.</span>
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="plaintext"> * Renaming binaries and man pages:</span>
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="plaintext"></span>
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<td class="diff-line-num old old_line" data-linenumber="162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC162" class="line" lang="plaintext"> hmmalign => hmm2align<span class="idiff left right"> </span></span>
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<td class="diff-line-num old old_line" data-linenumber="163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
163
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<pre style="margin: 0;">-<span id="LC163" class="line" lang="plaintext"> hmmbuild => hmm2build<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="plaintext"> hmmalign => hmm2align</span>
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<td class="diff-line-num new old_line" data-linenumber="164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="plaintext"> hmmbuild => hmm2build</span>
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<pre style="margin: 0;"> <span id="LC172" class="line" lang="plaintext"> hmmcalibrate => hmm2calibrate</span>
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165
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<pre style="margin: 0;">-<span id="LC165" class="line" lang="plaintext"> hmmconvert => hmm2convert<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC166" class="line" lang="plaintext"> hmmemit => hmm2emit<span class="idiff left right"> </span></span>
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167
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<pre style="margin: 0;">-<span id="LC167" class="line" lang="plaintext"> hmmfetch => hmm2fetch<span class="idiff left right"> </span></span>
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168
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<pre style="margin: 0;">-<span id="LC168" class="line" lang="plaintext"> hmmindex => hmm2index<span class="idiff left right"> </span></span>
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169
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<pre style="margin: 0;">-<span id="LC169" class="line" lang="plaintext"> hmmpfam => hmm2pfam<span class="idiff left right"> </span></span>
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170
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<pre style="margin: 0;">-<span id="LC170" class="line" lang="plaintext"> hmmsearch => hmm2search<span class="idiff left right"> </span></span>
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171
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<pre style="margin: 0;">-<span id="LC171" class="line" lang="plaintext"><span class="idiff left right"> </span></span>
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173
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="plaintext"> hmmconvert => hmm2convert</span>
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174
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="plaintext"> hmmemit => hmm2emit</span>
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175
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<pre style="margin: 0;">+<span id="LC175" class="line" lang="plaintext"> hmmfetch => hmm2fetch</span>
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176
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="plaintext"> hmmindex => hmm2index</span>
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177
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="plaintext"> hmmpfam => hmm2pfam</span>
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178
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="plaintext"> hmmsearch => hmm2search</span>
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179
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<pre style="margin: 0;">+<span id="LC179" class="line" lang="plaintext"></span>
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172
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="plaintext"> hmmcalibrate-pvm => hmm2calibrate-pvm</span>
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="plaintext"> hmmpfam-pvm => hmm2pfam-pvm</span>
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174
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="plaintext"> hmmsearch-pvm => hmm2search-pvm</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="255" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -255,7 +263,7 @@ hmmer (2.1.3) unstable; urgency=low</td>
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<pre style="margin: 0;"> <span id="LC263" class="line" lang="plaintext"> * Move from /usr/doc to /usr/share/doc (closes: #91494)</span>
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<pre style="margin: 0;"> <span id="LC264" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC265" class="line" lang="plaintext"> -- Matthew Vernon <matthew@debian.org> Mon, 09 Apr 2001 16:12:21 +0100</span>
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<pre style="margin: 0;">-<span id="LC258" class="line" lang="plaintext"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC266" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC267" class="line" lang="plaintext">hmmer (2.1.2) unstable; urgency=low</span>
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260
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<pre style="margin: 0;"> <span id="LC268" class="line" lang="plaintext"></span>
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261
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<pre style="margin: 0;"> <span id="LC269" class="line" lang="plaintext"> * New maintainer</span>
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<li id="78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<a href="https://salsa.debian.org/med-team/hmmer2/-/compare/795e6a04a8d4663298a2ed85e6a7404088bb1c0c...43194d908114dc7f1ec1dbeb6877d05ea10cdc6d#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong>
deleted
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">12</span></pre>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,17 +4,17 @@ Uploaders: Andreas Tille <tille@debian.org>,</td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="mosel"> <span class="n" style="color: #333;">Laszlo</span> <span class="n" style="color: #333;">Kajan</span> <span class="p"><</span><span class="n" style="color: #333;">lkajan</span><span class="p">@</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">></span></span>
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="mosel"><span class="n" style="color: #333;">Section</span><span class="p">:</span> <span class="n" style="color: #333;">science</span></span>
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="mosel"><span class="n" style="color: #333;">Priority</span><span class="p">:</span> <span class="n" style="color: #333;">optional</span></span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="mosel"><span class="n" style="color: #333;">Build</span><span class="p">-</span><span class="n" style="color: #333;">Depends</span><span class="p">:</span> <span class="n" style="color: #333;">debhelper</span> <span class="p">(>=</span> <span class="m" style="color: #099;">12</span><span class="p">~),</span></span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="mosel"> <span class="n" style="color: #333;">pvm</span><span class="p">-</span><span class="n" style="color: #333;">dev</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="mosel"><span class="n" style="color: #333;">Build</span><span class="p">-</span><span class="n" style="color: #333;">Depends</span><span class="p">:</span> <span class="n" style="color: #333;">debhelper</span><span class="p">-</span><span class="n" style="color: #333;">compat</span> <span class="p">(=</span> <span class="m" style="color: #099;">13</span><span class="p">),</span></span>
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<td class="diff-line-num old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="mosel"> <span class="n" style="color: #333;">libperl4</span><span class="p">-</span><span class="n" style="color: #333;">corelibs</span><span class="p">-</span><span class="n" style="color: #333;">perl</span><span class="p">,</span></span>
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10
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="mosel"> <span class="n" style="color: #333;">libsquid</span><span class="p">-</span><span class="n" style="color: #333;">dev</span><span class="p">,</span></span>
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11
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="mosel"> <span class="n" style="color: #333;">pkg</span><span class="p">-</span><span class="n" style="color: #333;">config</span><span class="p">,</span></span>
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12
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="mosel"> <span class="n" style="color: #333;">dh</span><span class="p">-</span><span class="n" style="color: #333;">exec</span><span class="p">,</span></span>
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13
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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="mosel"> <span class="n" style="color: #333;">rename</span></span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="mosel"><span class="n" style="color: #333;">Standards</span><span class="p">-</span><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">4.<span class="idiff left right">3</span>.0</span></span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="mosel"><span class="n" style="color: #333;">Standards</span><span class="p">-</span><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">4.<span class="idiff left right">5</span>.0</span></span>
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15
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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="mosel"><span class="n" style="color: #333;">Vcs</span><span class="p">-</span><span class="n" style="color: #333;">Browser</span><span class="p">:</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">hmmer2</span></span>
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<td class="diff-line-num old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
16
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<td class="diff-line-num new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="mosel"><span class="n" style="color: #333;">Vcs</span><span class="p">-</span><span class="n" style="color: #333;">Git</span><span class="p">:</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">hmmer2</span><span class="p">.</span><span class="n" style="color: #333;">git</span></span>
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<td class="diff-line-num old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
17
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="mosel"><span class="n" style="color: #333;">Homepage</span><span class="p">:</span> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">hmmer</span><span class="p">.</span><span class="n" style="color: #333;">janelia</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="mosel"><span class="n" style="color: #333;">Rules</span><span class="p">-</span><span class="n" style="color: #333;">Requires</span><span class="p">-</span><span class="n" style="color: #333;">Root</span><span class="p">:</span> <span class="n" style="color: #333;">no</span></span>
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18
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18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="mosel"></span>
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19
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="mosel"><span class="k" style="font-weight: 600;">Package</span><span class="p">:</span> <span class="n" style="color: #333;">hmmer2</span></span>
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<td class="diff-line-num old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
20
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="mosel"><span class="n" style="color: #333;">Architecture</span><span class="p">:</span> <span class="n" style="color: #333;">any</span></span>
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<a href="https://salsa.debian.org/med-team/hmmer2/-/compare/795e6a04a8d4663298a2ed85e6a7404088bb1c0c...43194d908114dc7f1ec1dbeb6877d05ea10cdc6d#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -13,7 +13,7 @@ sampledir:=$(CURDIR)/debian/$(pkgdata)/usr/share/doc/$(pkgdata)/examples</td>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> dh $@</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">override_dh_auto_configure:</span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> dh_auto_configure -- --enable-threads --enable-lfs --enable-pvm</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> dh_auto_configure -- --enable-threads --enable-lfs <span class="idiff left right"># </span>--enable-pvm</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> # avoid duplicated definition of PACKAGE_NAME (basically conflicting with biosquid when used together)</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> sed -i -e '/^#define PACKAGE_NAME /i #ifndef PACKAGE_NAME' \</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> -e '/^#define PACKAGE_NAME /a #endif' \</span>
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<a href="https://salsa.debian.org/med-team/hmmer2/-/compare/795e6a04a8d4663298a2ed85e6a7404088bb1c0c...43194d908114dc7f1ec1dbeb6877d05ea10cdc6d#b1dbf22e88351ec0d5d1d1a7f53295504b480e61"><strong>debian/salsa-ci.yml</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="yaml"><span class="nn" style="color: #555;">---</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="yaml"><span class="na" style="color: #008080;">include</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml</span></span></pre>
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<a href="https://salsa.debian.org/med-team/hmmer2/-/compare/795e6a04a8d4663298a2ed85e6a7404088bb1c0c...43194d908114dc7f1ec1dbeb6877d05ea10cdc6d#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Contact: http://selab.janelia.org/people/eddys/contact.html</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">Name: HMMER</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Reference:</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Author: Eddy, Sean R.</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> Title: Profile hidden Markov models</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -20,3 +19,5 @@ Registry:</td>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> Entry: hmmer2</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> - Name: conda:bioconda</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> Entry: hmmer2</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">Repository: https://github.com/MichiganTech/hmmer.git</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">Repository-Browse: https://github.com/MichiganTech/hmmer</span></pre>
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