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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/libssw">Debian Med / libssw</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/libssw/-/commit/64733be2ae26e9eab90d85da1b3f1b039b352fde">64733be2</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-13T12:55:30+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Make sure library will be build before it is used for linking
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libssw/-/commit/28c546021908ee5b9d7ff2a5024b89e3a26a1b9d">28c54602</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-13T12:59:20+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Revert non-parallel build
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libssw/-/commit/fff4c9ce11eca46d44a856d268e5f1357580af74">fff4c9ce</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-13T13:41:49+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Team upload
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libssw/-/commit/a689b8e63c279f92b4946f578da5ebcc17ce1680">a689b8e6</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-13T13:42:01+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 13
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libssw/-/commit/35b744625c8cda6569b8836d3247cdae3dfdd258">35b74462</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-08-13T13:44:30+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
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<h4>5 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#75de8a8fba7b2dc8f523b991ff6a523ed2bf920f">
debian/patches/build_all_libs.patch
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<li class="file-stats">
<a href="#52dc3e58185a550acb60dd82bc30b7c62d391abb">
debian/patches/rename_tool.patch
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/libssw/-/compare/82783228dd06349293b9f6fd996a26f0a11775a9...35b744625c8cda6569b8836d3247cdae3dfdd258#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">libssw (1.1-11) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">libssw (1.1-11) <span class="idiff left right">unstable</span>; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"> * No parallel build (otherwise some architectures fail to create</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> static lib right in time)</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team upload</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Make sure library will be build before it is used for linking</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * debhelper-compat 13 (routine-update)</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> <span class="idiff left right">Wed, 12 Aug 2020 13:44:12</span> +0200</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> <span class="idiff left right">Thu, 13 Aug 2020 13:42:07</span> +0200</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">libssw (1.1-10) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/libssw/-/compare/82783228dd06349293b9f6fd996a26f0a11775a9...35b744625c8cda6569b8836d3247cdae3dfdd258#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,7 +5,7 @@ Uploaders: Sascha Steinbiss <satta@debian.org>,</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper (>= 12~),</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> debhelper-compat (= 1<span class="idiff left right">2</span>),</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> debhelper-compat (= 1<span class="idiff left right">3</span>),</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> default-jdk-headless <!nojava>,</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> javahelper <!nojava>,</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> help2man,</span>
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<li id="75de8a8fba7b2dc8f523b991ff6a523ed2bf920f">
<a href="https://salsa.debian.org/med-team/libssw/-/compare/82783228dd06349293b9f6fd996a26f0a11775a9...35b744625c8cda6569b8836d3247cdae3dfdd258#75de8a8fba7b2dc8f523b991ff6a523ed2bf920f"><strong>debian/patches/build_all_libs.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,7 +6,7 @@ Description: build all libraries</td>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="p">Author: Sascha Steinbiss <sascha@steinbiss.name></span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/Makefile</span></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/Makefile</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff"><span class="p">@@ -5,2<span class="idiff left right">4 +5,29</span> @@</span> CXXFLAGS := $(CFLAGS)</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="p">@@ -5,2<span class="idiff left right">6 +5,31</span> @@</span> CXXFLAGS := $(CFLAGS)</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="diff"> LOBJS = ssw.o</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="diff"> LCPPOBJS = ssw_cpp.o</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="diff"> PROG = ssw_test</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -36,11 +36,14 @@ Author: Sascha Steinbiss <sascha@steinbiss.name></td>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- $(CC) $(CFLAGS) -fPIC -shared -rdynamic -o $@ $<</span></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+$(LIB): ssw.c ssw.h ssw_cpp.h ssw_cpp.cpp</span></span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $(CXX) $(CPPFLAGS) $(CXXFLAGS) -fPIC -shared -rdynamic -Wl,-soname,$(LIB) -o $@ $^</span></span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-$(PROG): main.c kseq.h</span></span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+$(STATICLIB): $(LOBJS) $(LCPPOBJS)</span></span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ar rcs $@ $^</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+$(PROG): main.c kseq.h $(LIB) $(STATICLIB)</span></span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="diff"> $(<span class="idiff left right">PROG): main.c kseq.h</span></span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="diff"> $(<span class="idiff left right">EXAMPLE): example.c</span></span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="diff"><span class="p">@@ -38,10 +43,10 @@</span> $(JAVA_LIB): sswjni.c ssw.c ssw.h</span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="diff"> $(CC) $(CFLAGS) $(JAVA_INLCUDES) -fPIC -shared -rdynamic -o $@ $< ssw.c </span>
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<li id="52dc3e58185a550acb60dd82bc30b7c62d391abb">
<a href="https://salsa.debian.org/med-team/libssw/-/compare/82783228dd06349293b9f6fd996a26f0a11775a9...35b744625c8cda6569b8836d3247cdae3dfdd258#52dc3e58185a550acb60dd82bc30b7c62d391abb"><strong>debian/patches/rename_tool.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -13,12 +13,10 @@ Author: Sascha Steinbiss <satta@debian.org></td>
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="diff"> SOVERS=.0</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="diff"> LIB = libssw.so$(SOVERS)</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="diff"> STATICLIB = libssw.a</span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="diff"><span class="p">@@ -30,11 +30,12 @@</span> $(LIB): ssw.c ssw.h ssw_cpp.h ssw_cpp.cp</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="diff"> $(STATICLIB): $(LOBJS) $(LCPPOBJS)</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="p">@@ -31,10 +31,11 @@</span> $(STATICLIB): $(LOBJS) $(LCPPOBJS)</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="diff"> ar rcs $@ $^</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-$(PROG): main.c kseq.h</span></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+$(PROG): main.c kseq.h $(LIB)</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> $(PROG): main.c kseq.h $(LIB) $(STATICLIB)</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $(CC) $(CPPFLAGS) $(CFLAGS) -o $@ main.c kseq.h -L. -lssw -lm -lz $(LDFLAGS)</span></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="diff"> $(EXAMPLE): example.c</span>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/libssw/-/compare/82783228dd06349293b9f6fd996a26f0a11775a9...35b744625c8cda6569b8836d3247cdae3dfdd258#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -26,9 +26,9 @@ override_dh_auto_clean:</td>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext">override_dh_auto_build:</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext">ifneq ($(filter nojava,$(DEB_BUILD_PROFILES)),)</span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> dh_auto_build --<span class="idiff left right">no-parallel --</span>sourcedirectory src -- default</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> dh_auto_build --sourcedirectory src -- default</span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext">else</span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"> dh_auto_build --<span class="idiff left right">no-parallel --</span>sourcedirectory src -- default java</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> dh_auto_build --sourcedirectory src -- default java</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext">endif</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext">ifneq ($(filter nojava,$(DEB_BUILD_PROFILES)),)</span>
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