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<h3>
Pierre Gruet pushed to branch master
at <a href="https://salsa.debian.org/med-team/sepp">Debian Med / sepp</a>
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<h4>
Commits:
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<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/f9471dbf99716432b1824eed63dfe0f061316400">f9471dbf</a></strong>
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<span>by Pierre Gruet</span>
<i>at 2020-08-19T11:13:00+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adding a Lintian override for .py scripts
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<strong><a href="https://salsa.debian.org/med-team/sepp/-/commit/c458c31847f39900a4dae5ae07bf816d1c1f2a40">c458c318</a></strong>
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<span>by Pierre Gruet</span>
<i>at 2020-08-19T15:43:45+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Updating TODO in changelog
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<h4>2 changed files:</h4>
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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+
debian/sepp.lintian-overrides
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/sepp/-/compare/440740d9e9ea61653d2000bf82b202e5ccad44a4...c458c31847f39900a4dae5ae07bf816d1c1f2a40#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,15 +2,8 @@ sepp (4.3.10+dfsg-1) UNRELEASED; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * Initial release (Closes: #<bug>)</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> TODO:</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> [javac] /build/sepp-4.3.10+dfsg/tools/merge/src/phylolab/taxonamic/JSONMerger.java:391: error: incompatible types: JSONArray cannot be converted to Collection<? extends JSONArray></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> [javac] sortedPlacements.addAll(placements);</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> [javac] ^</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> [javac] /build/sepp-4.3.10+dfsg/tools/merge/src/phylolab/taxonamic/JSONMerger.java:562: error: incompatible types: JSONArray cannot be converted to Collection<? extends JSONObject></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> [javac] sortedPlacements.addAll(resultsPlacements);</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> [javac] ^</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> [javac] /build/sepp-4.3.10+dfsg/tools/merge/src/phylolab/taxonamic/PPlacerJSONMerger.java:315: error: incompatible types: JSONArray cannot be converted to Collection<? extends JSONObject></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> [javac] sortedPlacements.addAll(resultsPlacements);</span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> [javac] ^</span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> [javac] Note: Some input files use or override a deprecated API.</span>
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<td class="diff-line-num new old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> - See if split_sequences.py should be shipped.</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> - Call build-time tests in debian/rules.</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> - Write manpages.</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> -- <span class="idiff left right">Andreas Tille <tille@debian.org> Sun, 24 May 2020 06:37:36</span> +0200</span></pre>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> -- <span class="idiff left right">Pierre Gruet <pgtdebian@free.fr> Wed, 19 Aug 2020 11:02:08</span> +0200</span></pre>
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<a href="https://salsa.debian.org/med-team/sepp/-/compare/440740d9e9ea61653d2000bf82b202e5ccad44a4...c458c31847f39900a4dae5ae07bf816d1c1f2a40#9979085cf4bd85f96bf1690f49b7194102a233f0"><strong>debian/sepp.lintian-overrides</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext"># see https://lists.debian.org/debian-med/2018/06/msg00043.html</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">: script-with-language-extension usr/bin/*.py</span></pre>
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