<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en">
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>



<style>img {
max-width: 100%; height: auto;
}
</style>
</head>
<body>
<div class="content">

<h3>
Pierre Gruet pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/libgoby-java">Debian Med / libgoby-java</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/libgoby-java/-/commit/ebf8a932ed54cb2a1e044619277f78b5a9548d4c">ebf8a932</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-08-22T07:44:47+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.3.1+dfsg</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#24139dae656713ba861751fb2c2ac38839349a7a">
<span class="new-file">
+
.gitattributes
</span>
</a>
</li>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
<span class="new-file">
+
.gitignore
</span>
</a>
</li>
<li class="file-stats">
<a href="#7445606fbf8f3683cd42bdc54b05d7a0bc2dfc44">
<span class="new-file">
+
.gitmodules
</span>
</a>
</li>
<li class="file-stats">
<a href="#3251d7a8143ce2e789f0468513df8f285f842c3a">
CHANGES.txt
</a>
</li>
<li class="file-stats">
<a href="#17aca75c046135ec8cc36b66e5618bdb3329f90e">
<span class="new-file">
+
bin/evaluate-genotypes-ssi-keras.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#ee536e63242bdfab48d9df0cfdaf8d406555e23d">
<span class="new-file">
+
bin/goby-python-with-path.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#7a1c11027c251f9389be1cec5d2fa3ae0e9c4174">
<span class="new-file">
+
buildsupport/.gitattributes
</span>
</a>
</li>
<li class="file-stats">
<a href="#425f66c5fcd4ebaeab185d4b3efa16590928be58">
goby-distribution/data/reference/mm9/chr1.fa.gz
</a>
</li>
<li class="file-stats">
<a href="#8d8c734787302fe7deebee885dfb1bd7cdca9588">
<span class="new-file">
+
goby-distribution/data/reference/test-cases-variations/test-case-references.fasta
</span>
</a>
</li>
<li class="file-stats">
<a href="#70c0ce9141846f058d48c3563453d6bca3452cca">
<span class="new-file">
+
goby-distribution/data/snps/sample-mouse.tsv
</span>
</a>
</li>
<li class="file-stats">
<a href="#08108d9037b5571c7af42ac107f32f817013aa2d">
<span class="new-file">
+
goby-distribution/goby-distribution.iml
</span>
</a>
</li>
<li class="file-stats">
<a href="#afec9976e56a7723f1544ef4085c1eff5fb874f9">
<span class="new-file">
+
goby-distribution/pom.xml
</span>
</a>
</li>
<li class="file-stats">
<a href="#f4ef9e3ff8f954dcc756ceef352c3de9a2e25871">
<span class="new-file">
+
goby-distribution/src/main/java/org/campagnelab/goby/GobyVersion.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#75bfbab96b90ba1a28dd10dff65c9acb56846f35">
<span class="new-file">
+
goby-distribution/src/main/java/org/campagnelab/goby/R/FisherExact.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#1ea4a40b9f5903ec89e3579c07bfa92420df4bfa">
<span class="new-file">
+
goby-distribution/src/main/java/org/campagnelab/goby/R/GobyRengine.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#68be362c3717af4465c7c1c7c2862bde8b6ba3ee">
<span class="new-file">
+
goby-distribution/src/main/java/org/campagnelab/goby/R/RConsoleMainLoopCallback.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#87dca436121ee6ee03f6fb4540a17d371c7f6a13">
<span class="new-file">
+
goby-distribution/src/main/java/org/campagnelab/goby/R/RLoggerMainLoopCallback.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#f00a9736a2bf42eb40020c3dbe548d651066f98e">
<span class="new-file">
+
goby-distribution/src/main/java/org/campagnelab/goby/R/package.html
</span>
</a>
</li>
<li class="file-stats">
<a href="#0a01233093ef902255bb552f7d46a65bb567d49d">
<span class="new-file">
+
goby-distribution/src/main/java/org/campagnelab/goby/Release1_9_7_2.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#4df057571fa289e5746657d4b19888b3c7a30a03">
<span class="new-file">
+
goby-distribution/src/main/java/org/campagnelab/goby/algorithmic/algorithm/ATGCCorrectionWeight.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#9c38f610a1d714006009a4e7fffcfa11b4633153">
<span class="new-file">
+
goby-distribution/src/main/java/org/campagnelab/goby/algorithmic/algorithm/ATProportionWeight.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#3b59c957994b721fc4593eee9f75f17bf80b0ce9">
<span class="new-file">
+
goby-distribution/src/main/java/org/campagnelab/goby/algorithmic/algorithm/AnnotationCount.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#43cd990b2b25257cf22231c6c03a0742d7a30261">
<span class="new-file">
+
goby-distribution/src/main/java/org/campagnelab/goby/algorithmic/algorithm/AnnotationCountInterface.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#409fafd43336c4ce85cb3cfcfeee124400842980">
<span class="new-file">
+
goby-distribution/src/main/java/org/campagnelab/goby/algorithmic/algorithm/AnnotationCountIterateAlignments.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#1ddf01942154ce060f1f24f0dc5f4575f4bd536e">
<span class="new-file">
+
goby-distribution/src/main/java/org/campagnelab/goby/algorithmic/algorithm/AnnotationWeightCount.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#25721aa7e04838f3be88030518c53fd17867462f">
<span class="new-file">
+
goby-distribution/src/main/java/org/campagnelab/goby/algorithmic/algorithm/BaseProportionWeight.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#c3ecd55038297fbe2c3545eabbd4ca741953b48c">
<span class="new-file">
+
goby-distribution/src/main/java/org/campagnelab/goby/algorithmic/algorithm/ComputeCount.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#c7a87d7aec805f81087e37ca796312b5096e9d41">
<span class="new-file">
+
goby-distribution/src/main/java/org/campagnelab/goby/algorithmic/algorithm/ComputeCountInterface.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#de24822e94a50b22a5b3bf37b235d101122ecbac">
<span class="new-file">
+
goby-distribution/src/main/java/org/campagnelab/goby/algorithmic/algorithm/ComputeStartCount.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#ee3e1096dfacc413241a5a8b222981a8781250ff">
<span class="new-file">
+
goby-distribution/src/main/java/org/campagnelab/goby/algorithmic/algorithm/ComputeWeightCount.java
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>

</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #777;">

<br>
<a href="https://salsa.debian.org/med-team/libgoby-java/-/commit/ebf8a932ed54cb2a1e044619277f78b5a9548d4c">View it on GitLab</a>.
<br>
You're receiving this email because of your account on salsa.debian.org.
If you'd like to receive fewer emails, you can
adjust your notification settings.
<script type="application/ld+json">{"@context":"http://schema.org","@type":"EmailMessage","action":{"@type":"ViewAction","name":"View Commit","url":"https://salsa.debian.org/med-team/libgoby-java/-/commit/ebf8a932ed54cb2a1e044619277f78b5a9548d4c"}}</script>


</p>
</div>
</body>
</html>