<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en">
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style>img {
max-width: 100%; height: auto;
}
</style>
</head>
<body>
<div class="content">
<h3>
Pierre Gruet pushed to branch master
at <a href="https://salsa.debian.org/med-team/libgoby-java">Debian Med / libgoby-java</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/libgoby-java/-/commit/6f51bc504f6609b05c29b838f10e5a8423137680">6f51bc50</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-08-21T23:23:56+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adding excluded dirs in debian/copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libgoby-java/-/commit/8c9c33646283a0baea2082250743e732df69c19e">8c9c3364</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-08-21T23:24:36+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Depending on debhelper-compat
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libgoby-java/-/commit/ea053fd18dfb7b57de04c8b70438efb05597f5ff">ea053fd1</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-08-21T23:25:04+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Bumping Standards version to 4.5.0 (Rules-Requires-Root field)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libgoby-java/-/commit/ebf8a932ed54cb2a1e044619277f78b5a9548d4c">ebf8a932</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-08-22T07:44:47+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.3.1+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libgoby-java/-/commit/83f2dbd351941694721a6f9a0c91a6d479dd0401">83f2dbd3</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-08-22T07:57:27+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/3.3.1+dfsg'
Update to upstream version '3.3.1+dfsg'
with Debian dir c5428e2f9614511c081c99dc93ef7b1e740a3f73</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libgoby-java/-/commit/23219b0c3b7a21272347412a17c7579ffb40a285">23219b0c</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-08-24T11:51:17+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Building with Maven
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libgoby-java/-/commit/33a817ecbac265547bc0466d949f3aa46e6ddc5e">33a817ec</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-08-24T11:51:56+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Using the Debian-packaged protoc compiler in goby-io/pom.xml
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libgoby-java/-/commit/2946552b794d834b6578d60d4704ef4ef43845d4">2946552b</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-08-24T11:52:19+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adding missing dependencies in goby-io/pom.xml
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libgoby-java/-/commit/e007855ad41bb8220531536dc66c3e679a17df41">e007855a</a></strong>
<div>
<span>by Pierre Gruet</span>
<i>at 2020-08-24T11:52:35+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Writing TODO
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#24139dae656713ba861751fb2c2ac38839349a7a">
<span class="new-file">
+
.gitattributes
</span>
</a>
</li>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
<span class="new-file">
+
.gitignore
</span>
</a>
</li>
<li class="file-stats">
<a href="#7445606fbf8f3683cd42bdc54b05d7a0bc2dfc44">
<span class="new-file">
+
.gitmodules
</span>
</a>
</li>
<li class="file-stats">
<a href="#3251d7a8143ce2e789f0468513df8f285f842c3a">
CHANGES.txt
</a>
</li>
<li class="file-stats">
<a href="#17aca75c046135ec8cc36b66e5618bdb3329f90e">
<span class="new-file">
+
bin/evaluate-genotypes-ssi-keras.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#ee536e63242bdfab48d9df0cfdaf8d406555e23d">
<span class="new-file">
+
bin/goby-python-with-path.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#7a1c11027c251f9389be1cec5d2fa3ae0e9c4174">
<span class="new-file">
+
buildsupport/.gitattributes
</span>
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">
−
debian/compat
</span>
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#599d1de8ffddd8166d9d63ed1f615b667c71efd2">
<span class="new-file">
+
debian/libgoby-java.poms
</span>
</a>
</li>
<li class="file-stats">
<a href="#26121dc92cd4cd9822d2e9e2b619b799bf9a51f4">
<span class="new-file">
+
debian/maven.ignoreRules
</span>
</a>
</li>
<li class="file-stats">
<a href="#58530b38acb0fa3a65612c676abaea46c4a3f2f3">
<span class="new-file">
+
debian/maven.rules
</span>
</a>
</li>
<li class="file-stats">
<a href="#8585405484f09930892f52fc8586f799991520f7">
<span class="new-file">
+
debian/patches/adding_dependencies.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#77eab9699a307dbdc1aaabb9972b3e27a0b81aa3">
<span class="new-file">
+
debian/patches/protoc.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<span class="new-file">
+
debian/patches/series
</span>
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#425f66c5fcd4ebaeab185d4b3efa16590928be58">
goby-distribution/data/reference/mm9/chr1.fa.gz
</a>
</li>
<li class="file-stats">
<a href="#8d8c734787302fe7deebee885dfb1bd7cdca9588">
<span class="new-file">
+
goby-distribution/data/reference/test-cases-variations/test-case-references.fasta
</span>
</a>
</li>
<li class="file-stats">
<a href="#70c0ce9141846f058d48c3563453d6bca3452cca">
<span class="new-file">
+
goby-distribution/data/snps/sample-mouse.tsv
</span>
</a>
</li>
<li class="file-stats">
<a href="#08108d9037b5571c7af42ac107f32f817013aa2d">
<span class="new-file">
+
goby-distribution/goby-distribution.iml
</span>
</a>
</li>
<li class="file-stats">
<a href="#afec9976e56a7723f1544ef4085c1eff5fb874f9">
<span class="new-file">
+
goby-distribution/pom.xml
</span>
</a>
</li>
<li class="file-stats">
<a href="#f4ef9e3ff8f954dcc756ceef352c3de9a2e25871">
<span class="new-file">
+
goby-distribution/src/main/java/org/campagnelab/goby/GobyVersion.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#75bfbab96b90ba1a28dd10dff65c9acb56846f35">
<span class="new-file">
+
goby-distribution/src/main/java/org/campagnelab/goby/R/FisherExact.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#1ea4a40b9f5903ec89e3579c07bfa92420df4bfa">
<span class="new-file">
+
goby-distribution/src/main/java/org/campagnelab/goby/R/GobyRengine.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#68be362c3717af4465c7c1c7c2862bde8b6ba3ee">
<span class="new-file">
+
goby-distribution/src/main/java/org/campagnelab/goby/R/RConsoleMainLoopCallback.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#87dca436121ee6ee03f6fb4540a17d371c7f6a13">
<span class="new-file">
+
goby-distribution/src/main/java/org/campagnelab/goby/R/RLoggerMainLoopCallback.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#f00a9736a2bf42eb40020c3dbe548d651066f98e">
<span class="new-file">
+
goby-distribution/src/main/java/org/campagnelab/goby/R/package.html
</span>
</a>
</li>
<li class="file-stats">
<a href="#0a01233093ef902255bb552f7d46a65bb567d49d">
<span class="new-file">
+
goby-distribution/src/main/java/org/campagnelab/goby/Release1_9_7_2.java
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #777;">
—
<br>
<a href="https://salsa.debian.org/med-team/libgoby-java/-/compare/d1093aa6c37869c007c2b5e8d0eb1c7282918226...e007855ad41bb8220531536dc66c3e679a17df41">View it on GitLab</a>.
<br>
You're receiving this email because of your account on salsa.debian.org.
If you'd like to receive fewer emails, you can
adjust your notification settings.
</p>
</div>
</body>
</html>