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GitLab

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<h3>

Michael R. Crusoe pushed to branch upstream

at <a href="https://salsa.debian.org/med-team/toil">Debian Med / toil</a>

</h3>

<h4>

Commits:

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<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/3840d76ff991c82f676815c4dcc8612ca7f918b6">3840d76f</a></strong>

<div>

<span>by Michael R. Crusoe</span>

<i>at 2020-08-27T10:10:55+02:00</i>

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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 4.2.0</pre>

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</ul>

<h4>30 changed files:</h4>

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<a href="#587d266bb27a4dc3022bbed44dfa19849df3044c">

.gitlab-ci.yml

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<li class="file-stats">

<a href="#561b88e19de321ca62c7590bbb350765fb110905">

README.rst

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<li class="file-stats">

<a href="#254a2da7a740675e537439eb88e32083b9ea4771">

docs/conf.py

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<a href="#32be2c2e3690a70b96e3263f2bb4aa0ce226602a">

docs/running/cliOptions.rst

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<li class="file-stats">

<a href="#8e4430ed91538c989bbba29d0f6541cce24a88d1">

docs/running/cloud/amazon.rst

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<a href="#2504a191cff70b050dc46c5c1c3823d7872aa114">

docs/running/cloud/cloud.rst

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<a href="#9d336859ebc50ce12f946e32de94343f00be9ebb">

docs/running/cloud/clusterUtils.rst

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<li class="file-stats">

<a href="#70b5c097c4e102be40b0cbc3b0321bdec8cb6e10">

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+

docs/running/cloud/kubernetes.rst

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<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">

setup.py

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<a href="#42e82db8dfc40fc9f2df468cc92584cb0441719f">

src/toil/__init__.py

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<a href="#9859689e8bd3ddc443a4adadad9053893501bd72">

src/toil/batchSystems/kubernetes.py

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<a href="#184892bb0e21972b1bc724ffc0b62a4c3616a44c">

src/toil/batchSystems/lsf.py

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<a href="#da04225838d2734baa1efa5147660ca1e6d2df14">

src/toil/batchSystems/lsfHelper.py

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<a href="#661fff917b9f0bc71179e03e30813144d091ddfd">

src/toil/batchSystems/mesos/executor.py

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<a href="#40d7e534600c41f2ac23866cd2edfb31bccd3afe">

src/toil/batchSystems/singleMachine.py

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<a href="#a6f3af15c881ae20fc1a43acbbeb46501aac42d1">

src/toil/batchSystems/slurm.py

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<a href="#e4fd847d42e121b772337a96bada018b0e6ad45c">

src/toil/common.py

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<a href="#0dbd18a5ef7b094b4ad2f95d5aa87ee2ed51212f">

src/toil/cwl/cwltoil.py

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<a href="#cba2923ab2fdd1898642e543e045ee91ec857871">

src/toil/deferred.py

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<li class="file-stats">

<a href="#7bacd2a077f0dc4dd68b8f4bb4edb4cb762f9823">

src/toil/fileStores/cachingFileStore.py

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<a href="#25bb698efc92d8425e6ea48ef986d72d2cf62017">

src/toil/job.py

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<li class="file-stats">

<a href="#8b714c07cb0f77e6f95c192a67530387ed77936e">

src/toil/jobGraph.py

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<li class="file-stats">

<a href="#f8698b8c91b4525c2e8a2cc4fe1f8b489291216f">

src/toil/jobStores/fileJobStore.py

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<li class="file-stats">

<a href="#b423c2afb0f414beab2120da703bd01ca2a7bb55">

src/toil/leader.py

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<li class="file-stats">

<a href="#46e9f43e5dfd982027d921f9af5fe94bc9d70607">

src/toil/lib/bioio.py

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<li class="file-stats">

<a href="#b9e12697d92644b5c5066ea90567c44a73829875">

src/toil/lib/docker.py

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<a href="#f79f42b6f106c28017c38d5755a5a6b851c8cae2">

src/toil/lib/misc.py

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<li class="file-stats">

<a href="#7e71432f91b03a2d090d368d005146e20d34f040">

src/toil/lib/threading.py

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<li class="file-stats">

<a href="#aafbcbd682e5739a85dbe72712e7e41023cfa9c0">

src/toil/provisioners/__init__.py

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<li class="file-stats">

<a href="#ebacd73950dc03a7e19229812bb91650181fb787">

src/toil/provisioners/abstractProvisioner.py

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<h5>The diff was not included because it is too large.</h5>

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