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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/toil">Debian Med / toil</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/3840d76ff991c82f676815c4dcc8612ca7f918b6">3840d76f</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-08-27T10:10:55+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 4.2.0</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/73c303859847a9dd94933d28a9cd51d2c50653c2">73c30385</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-08-27T10:10:55+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/1fdd0cacc80974df04db78acdba97a15669c63dc">1fdd0cac</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-08-27T10:11:01+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/4.2.0'
Update to upstream version '4.2.0'
with Debian dir 0d729c6925b479dbff7406658935c3121a7071be</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/658537e4735d10153e4c4a814b5b49dfc063e6e5">658537e4</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-08-27T10:33:39+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove unneeded no_virtualenv_to_create_manpages.patch; freshen remaining patches.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/f6d0d1686e523e577616ef9d0db1dcc33c52a10f">f6d0d168</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-08-27T10:45:00+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/tests/control: 'superficial' is a restriction, not a feature
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/c6de115a3c155666ce2bafb09a4e12da8c8be0ba">c6de115a</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-08-27T10:46:21+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Quiet a lintian false positive for repeated-path-segment
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/c12712626a18374375254456b4e3b98ba3cb9088">c1271262</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-08-27T11:23:36+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">bump minimum cwltool version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/453cb8cc3b0578e30a71537ba3bca311d714fd53">453cb8cc</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-08-27T11:26:54+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">release 4.2.0-1
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#587d266bb27a4dc3022bbed44dfa19849df3044c">
.gitlab-ci.yml
</a>
</li>
<li class="file-stats">
<a href="#561b88e19de321ca62c7590bbb350765fb110905">
README.rst
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#e94fbb8719c4a68a67df894f2683205bb9914852">
debian/patches/no_galaxy_lib
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<li class="file-stats">
<a href="#e4edc1d4104bcf89de6479329e0a1f666d285d01">
<span class="deleted-file">
−
debian/patches/no_virtualenv_to_create_manpages.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#162e41e7c3dcfdb5813c4718e3f8503d4861a8ba">
debian/patches/remove-pathlib2-dep
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#bbcb48e2be151813ceeaaec7eadcaf824b49c1c6">
debian/patches/setting_version.patch
</a>
</li>
<li class="file-stats">
<a href="#c1fb0e9c942747a583cd8adc2707dd0cb1d97505">
debian/patches/soften-mesos-deps
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</li>
<li class="file-stats">
<a href="#cb805f74cef9b2dafa0758f976c0bcadda0b7dde">
debian/patches/version.patch
</a>
</li>
<li class="file-stats">
<a href="#83223a554d33ba7e1888274ff8ac43adb8147ba0">
debian/tests/control
</a>
</li>
<li class="file-stats">
<a href="#76aed571fa1aedc45cdf5c839049852f3158917e">
<span class="new-file">
+
debian/toil.lintian-overrides
</span>
</a>
</li>
<li class="file-stats">
<a href="#254a2da7a740675e537439eb88e32083b9ea4771">
docs/conf.py
</a>
</li>
<li class="file-stats">
<a href="#32be2c2e3690a70b96e3263f2bb4aa0ce226602a">
docs/running/cliOptions.rst
</a>
</li>
<li class="file-stats">
<a href="#8e4430ed91538c989bbba29d0f6541cce24a88d1">
docs/running/cloud/amazon.rst
</a>
</li>
<li class="file-stats">
<a href="#2504a191cff70b050dc46c5c1c3823d7872aa114">
docs/running/cloud/cloud.rst
</a>
</li>
<li class="file-stats">
<a href="#9d336859ebc50ce12f946e32de94343f00be9ebb">
docs/running/cloud/clusterUtils.rst
</a>
</li>
<li class="file-stats">
<a href="#70b5c097c4e102be40b0cbc3b0321bdec8cb6e10">
<span class="new-file">
+
docs/running/cloud/kubernetes.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
</a>
</li>
<li class="file-stats">
<a href="#42e82db8dfc40fc9f2df468cc92584cb0441719f">
src/toil/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#9859689e8bd3ddc443a4adadad9053893501bd72">
src/toil/batchSystems/kubernetes.py
</a>
</li>
<li class="file-stats">
<a href="#184892bb0e21972b1bc724ffc0b62a4c3616a44c">
src/toil/batchSystems/lsf.py
</a>
</li>
<li class="file-stats">
<a href="#da04225838d2734baa1efa5147660ca1e6d2df14">
src/toil/batchSystems/lsfHelper.py
</a>
</li>
<li class="file-stats">
<a href="#661fff917b9f0bc71179e03e30813144d091ddfd">
src/toil/batchSystems/mesos/executor.py
</a>
</li>
<li class="file-stats">
<a href="#40d7e534600c41f2ac23866cd2edfb31bccd3afe">
src/toil/batchSystems/singleMachine.py
</a>
</li>
<li class="file-stats">
<a href="#a6f3af15c881ae20fc1a43acbbeb46501aac42d1">
src/toil/batchSystems/slurm.py
</a>
</li>
<li class="file-stats">
<a href="#e4fd847d42e121b772337a96bada018b0e6ad45c">
src/toil/common.py
</a>
</li>
<li class="file-stats">
<a href="#0dbd18a5ef7b094b4ad2f95d5aa87ee2ed51212f">
src/toil/cwl/cwltoil.py
</a>
</li>
<li class="file-stats">
<a href="#cba2923ab2fdd1898642e543e045ee91ec857871">
src/toil/deferred.py
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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