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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/diamond-aligner">Debian Med / diamond-aligner</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/b8326e5ffd4b9f76926364fa849c1513660c3e9a">b8326e5f</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-08-31T13:49:39+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.0.4</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/977047af0678127c7ae05239f5fd906db3834112">977047af</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-08-31T13:49:39+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/e589edda1bcfdc79b3c005b74df0465600bec5f2">e589edda</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-08-31T13:49:41+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.0.4'
Update to upstream version '2.0.4'
with Debian dir e5c702eb06d479cbb5646cdcfc7e4b83229c702b</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/5d8a422592d4ef5dce06e275aa1ddbbef26ca0b6">5d8a4225</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-08-31T15:06:19+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix typos
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/82ad64e7ca3e31d561631af8f0dbf0d2ea62a70c">82ad64e7</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-08-31T15:29:27+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix cross building with test invocation
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/8a89ff551dc2f2307f768c44ddf3105616e3599f">8a89ff55</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-08-31T15:29:33+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">release 2.0.4-1
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#6651ddff6eb82c840ced7c1dddee15c6e1913dd4">
Dockerfile
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<span class="new-file">
+
debian/patches/series
</span>
</a>
</li>
<li class="file-stats">
<a href="#e4c19aed51618bf0c7ebd03189c67e422f84d4eb">
<span class="new-file">
+
debian/patches/spelling
</span>
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#ba308c53c268704c3008f5e2e6e8129f9f6bf3fe">
src/ChangeLog
</a>
</li>
<li class="file-stats">
<a href="#f76380e3e66f9453de89e5ac198478544cf1e6e4">
src/align/align.cpp
</a>
</li>
<li class="file-stats">
<a href="#8310f6d8c536d182ebd128c5e462f7c6addcbf6d">
src/align/culling.cpp
</a>
</li>
<li class="file-stats">
<a href="#57c901d3b50277c21a7058a4f1cb26a867faea1a">
<span class="new-file">
+
src/align/culling.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#5a2381540b8362260dcaa6747086bb358097256e">
src/align/extend.cpp
</a>
</li>
<li class="file-stats">
<a href="#52ecbb45dea21619756b1951b32ef00fa81a1d54">
src/align/extend.h
</a>
</li>
<li class="file-stats">
<a href="#98a808eabbbc11da533eb019b5faf5950c4104ba">
src/align/gapped.cpp
</a>
</li>
<li class="file-stats">
<a href="#b18faac0ee01a4af7eb1b183c49e78e698af5c15">
src/align/gapped_filter.cpp
</a>
</li>
<li class="file-stats">
<a href="#8f9453cefaa66bad075c8bcb49a08b740b24e222">
src/align/legacy/banded_swipe_pipeline.cpp
</a>
</li>
<li class="file-stats">
<a href="#79b081d050ff058cc4444df01970041d95b03792">
src/align/legacy/query_mapper.cpp
</a>
</li>
<li class="file-stats">
<a href="#0aeb9ee496bd03e6dc1842a40aab160bb18ef82d">
<span class="new-file">
+
src/align/memory.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#84d656034746137b8c6b0226ff878a5b99cc6bb3">
src/align/output.cpp
</a>
</li>
<li class="file-stats">
<a href="#27a98ed94137004899d98cd6a804c895e94342c2">
src/align/ranking.cpp
</a>
</li>
<li class="file-stats">
<a href="#6d09ff6bcfac65c792218c53e21ca1a9e62a26ba">
src/align/target.h
</a>
</li>
<li class="file-stats">
<a href="#f8990446cab751baed0b8c7fc38171e7d68cb1f7">
src/align/ungapped.cpp
</a>
</li>
<li class="file-stats">
<a href="#76d5a97c09cca591280144de40f9c04a5ec57ef7">
src/basic/basic.cpp
</a>
</li>
<li class="file-stats">
<a href="#fe8c534c15ea9cf93547993244c3ab903c4895ff">
src/basic/config.cpp
</a>
</li>
<li class="file-stats">
<a href="#79a175a8b141cc4f06683108fcd39b79a555f1cd">
src/basic/config.h
</a>
</li>
<li class="file-stats">
<a href="#da280a51d91809345347036c4e31920b2c744ab7">
src/basic/const.h
</a>
</li>
<li class="file-stats">
<a href="#80dc9ea59410b77519d86244d5b42337fb185f2f">
src/basic/hssp.cpp
</a>
</li>
<li class="file-stats">
<a href="#f9492756ecc3a6486c8d8a74972ab3c60ae604a2">
src/basic/match.h
</a>
</li>
<li class="file-stats">
<a href="#197fc5f508fe7114a8d6969239ca21465d4ed6d3">
src/basic/parameters.h
</a>
</li>
<li class="file-stats">
<a href="#9cdd6e619760f59a971d25b80727732f834f4813">
src/basic/sequence.h
</a>
</li>
<li class="file-stats">
<a href="#02748963ebfdb263f232fa8cc7afc742d6771e86">
src/basic/statistics.h
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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