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GitLab

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<h3>

Michael R. Crusoe pushed to branch upstream

at <a href="https://salsa.debian.org/med-team/diamond-aligner">Debian Med / diamond-aligner</a>

</h3>

<h4>

Commits:

</h4>

<ul>

<li>

<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/b8326e5ffd4b9f76926364fa849c1513660c3e9a">b8326e5f</a></strong>

<div>

<span>by Michael R. Crusoe</span>

<i>at 2020-08-31T13:49:39+02:00</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.0.4</pre>

</li>

</ul>

<h4>30 changed files:</h4>

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<li class="file-stats">

<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">

CMakeLists.txt

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<li class="file-stats">

<a href="#6651ddff6eb82c840ced7c1dddee15c6e1913dd4">

Dockerfile

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<li class="file-stats">

<a href="#ba308c53c268704c3008f5e2e6e8129f9f6bf3fe">

src/ChangeLog

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</li>

<li class="file-stats">

<a href="#f76380e3e66f9453de89e5ac198478544cf1e6e4">

src/align/align.cpp

</a>

</li>

<li class="file-stats">

<a href="#8310f6d8c536d182ebd128c5e462f7c6addcbf6d">

src/align/culling.cpp

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<li class="file-stats">

<a href="#57c901d3b50277c21a7058a4f1cb26a867faea1a">

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+

src/align/culling.h

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</li>

<li class="file-stats">

<a href="#5a2381540b8362260dcaa6747086bb358097256e">

src/align/extend.cpp

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</li>

<li class="file-stats">

<a href="#52ecbb45dea21619756b1951b32ef00fa81a1d54">

src/align/extend.h

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<li class="file-stats">

<a href="#98a808eabbbc11da533eb019b5faf5950c4104ba">

src/align/gapped.cpp

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<li class="file-stats">

<a href="#b18faac0ee01a4af7eb1b183c49e78e698af5c15">

src/align/gapped_filter.cpp

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<li class="file-stats">

<a href="#8f9453cefaa66bad075c8bcb49a08b740b24e222">

src/align/legacy/banded_swipe_pipeline.cpp

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<li class="file-stats">

<a href="#79b081d050ff058cc4444df01970041d95b03792">

src/align/legacy/query_mapper.cpp

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<li class="file-stats">

<a href="#0aeb9ee496bd03e6dc1842a40aab160bb18ef82d">

<span class="new-file">

+

src/align/memory.cpp

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<li class="file-stats">

<a href="#84d656034746137b8c6b0226ff878a5b99cc6bb3">

src/align/output.cpp

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<li class="file-stats">

<a href="#27a98ed94137004899d98cd6a804c895e94342c2">

src/align/ranking.cpp

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<li class="file-stats">

<a href="#6d09ff6bcfac65c792218c53e21ca1a9e62a26ba">

src/align/target.h

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<li class="file-stats">

<a href="#f8990446cab751baed0b8c7fc38171e7d68cb1f7">

src/align/ungapped.cpp

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<li class="file-stats">

<a href="#76d5a97c09cca591280144de40f9c04a5ec57ef7">

src/basic/basic.cpp

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<li class="file-stats">

<a href="#fe8c534c15ea9cf93547993244c3ab903c4895ff">

src/basic/config.cpp

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<li class="file-stats">

<a href="#79a175a8b141cc4f06683108fcd39b79a555f1cd">

src/basic/config.h

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<li class="file-stats">

<a href="#da280a51d91809345347036c4e31920b2c744ab7">

src/basic/const.h

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</li>

<li class="file-stats">

<a href="#80dc9ea59410b77519d86244d5b42337fb185f2f">

src/basic/hssp.cpp

</a>

</li>

<li class="file-stats">

<a href="#f9492756ecc3a6486c8d8a74972ab3c60ae604a2">

src/basic/match.h

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<li class="file-stats">

<a href="#197fc5f508fe7114a8d6969239ca21465d4ed6d3">

src/basic/parameters.h

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</li>

<li class="file-stats">

<a href="#9cdd6e619760f59a971d25b80727732f834f4813">

src/basic/sequence.h

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</li>

<li class="file-stats">

<a href="#02748963ebfdb263f232fa8cc7afc742d6771e86">

src/basic/statistics.h

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</li>

<li class="file-stats">

<a href="#5e71a7684a9038f5bd927644be48836fd5f66806">

src/cluster/multi_step_cluster.cpp

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<li class="file-stats">

<a href="#4c75bd371ff8a5ac8f8c6c03800a0d197a6baf78">

src/data/reference.cpp

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<li class="file-stats">

<a href="#b4ebfd635f4bc15a73d7a817b3af743fc2daf57a">

src/data/reference.h

</a>

</li>

<li class="file-stats">

<a href="#681060858f53613aebc0e374d1943b837e701d0f">

src/dp/dp.h

</a>

</li>

</ul>

<h5>The diff was not included because it is too large.</h5>

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