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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/kma">Debian Med / kma</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/kma/-/commit/a5deda4a5ee6ea93c9d0732d1d955cf05160dada">a5deda4a</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-09-02T20:16:01+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.3.3</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kma/-/commit/4396a93f029ae0776500ffc819af792f601d1884">4396a93f</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-09-02T20:16:01+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kma/-/commit/15a6859d9be4bf99e5838bf677152aba774376f8">15a6859d</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-09-02T20:16:02+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.3.3'
Update to upstream version '1.3.3'
with Debian dir f4565588c2cc8ff255e921f99516e93ea4f42502</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kma/-/commit/fdd0500f316478b0062463fbcc0b7c3952470c40">fdd0500f</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-09-02T20:16:21+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4>6 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#ddd34e1789cc70e19fb0e89d73fae8d104ed9c40">
align.c
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
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<li class="file-stats">
<a href="#1fa9be53365c168355414c67a78869ee9befb877">
dist.c
</a>
</li>
<li class="file-stats">
<a href="#43638494320234f912fa37977d784743664b2c37">
matrix.c
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</li>
<li class="file-stats">
<a href="#97e3379ce2e33418ea5b83d3faaf35326b973d41">
nw.c
</a>
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<li class="file-stats">
<a href="#2d1dba06c7f4b4c2f13e05d40a391d5330c68ce4">
version.h
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</li>
</ul>
<h4>Changes:</h4>
<li id="ddd34e1789cc70e19fb0e89d73fae8d104ed9c40">
<a href="https://salsa.debian.org/med-team/kma/-/compare/4ad339db652cf28df3ea7bed5195c7b772b473b1...fdd0500f316478b0062463fbcc0b7c3952470c40#ddd34e1789cc70e19fb0e89d73fae8d104ed9c40"><strong>align.c</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -211,7 +211,6 @@ AlnScore KMA(const HashMapCCI *template_index, const unsigned char *qseq, int q_</td>
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<td class="diff-line-num old_line" data-linenumber="211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
211
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="c"> <span class="cm" style="color: #998; font-style: italic;">/* get best seed chain, returns best starting point */</span></span>
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<td class="diff-line-num old_line" data-linenumber="212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC212" class="line" lang="c"> <span class="n" style="color: #333;">start</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">chainSeedsPtr</span><span class="p">(</span><span class="n" style="color: #333;">points</span><span class="p">,</span> <span class="n" style="color: #333;">q_len</span><span class="p">,</span> <span class="n" style="color: #333;">t_len</span><span class="p">,</span> <span class="n" style="color: #333;">kmersize</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">aligned</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">mapQ</span><span class="p">);</span></span>
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213
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<td class="diff-line-num new_line" data-linenumber="213" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC213" class="line" lang="c"> <span class="n" style="color: #333;">score</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">points</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">score</span><span class="p">[</span><span class="n" style="color: #333;">start</span><span class="p">];</span></span>
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214
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<pre style="margin: 0;">-<span id="LC214" class="line" lang="c"> </span>
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<td class="diff-line-num old_line" data-linenumber="215" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC214" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">aligned</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">mapQ</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">mq</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">score</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">kmersize</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC215" class="line" lang="c"> <span class="n" style="color: #333;">Stat</span><span class="p">.</span><span class="n" style="color: #333;">score</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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<td class="diff-line-num old_line" data-linenumber="217" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC216" class="line" lang="c"> <span class="n" style="color: #333;">Stat</span><span class="p">.</span><span class="n" style="color: #333;">len</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="342" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="341" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -342,7 +341,7 @@ AlnScore KMA(const HashMapCCI *template_index, const unsigned char *qseq, int q_</td>
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342
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<pre style="margin: 0;"> <span id="LC341" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">Stat</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC342" class="line" lang="c"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC343" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">((</span><span class="n" style="color: #333;">t_l</span> <span class="o" style="font-weight: 600;">></span> <span class="mi" style="color: #099;">0</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">q_e</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">q_s</span> <span class="o" style="font-weight: 600;">></span> <span class="mi" style="color: #099;">0</span><span class="p">))</span> <span class="p">{</span></span>
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345
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<pre style="margin: 0;">-<span id="LC345" class="line" lang="c"> <span class="n" style="color: #333;">band</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">4</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">abs</span><span class="p">(</span><span class="n" style="color: #333;">t_<span class="idiff left">e</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">-</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">t_s</span></span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">q_e</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">q_s</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">bandwidth</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC344" class="line" lang="c"> <span class="n" style="color: #333;">band</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">4</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">abs</span><span class="p">(</span><span class="n" style="color: #333;">t_<span class="idiff left right">l</span></span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">q_e</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">q_s</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">bandwidth</span><span class="p">;</span></span>
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346
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<pre style="margin: 0;"> <span id="LC345" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">q_e</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">q_s</span> <span class="o" style="font-weight: 600;"><=</span> <span class="n" style="color: #333;">band</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">t_l</span> <span class="o" style="font-weight: 600;"><=</span> <span class="n" style="color: #333;">band</span><span class="p">)</span> <span class="p">{</span><span class="c1" style="color: #998; font-style: italic;">// || abs(t_e - t_s - q_e - q_s) >= 32) {</span></span>
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<pre style="margin: 0;"> <span id="LC346" class="line" lang="c"> <span class="n" style="color: #333;">NWstat</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">NW</span><span class="p">(</span><span class="n" style="color: #333;">template_index</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">seq</span><span class="p">,</span> <span class="n" style="color: #333;">qseq</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">t_s</span><span class="p">,</span> <span class="n" style="color: #333;">t_e</span><span class="p">,</span> <span class="n" style="color: #333;">q_s</span><span class="p">,</span> <span class="n" style="color: #333;">q_e</span><span class="p">,</span> <span class="n" style="color: #333;">Frag_align</span><span class="p">,</span> <span class="n" style="color: #333;">matrices</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC347" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">kma (1.3.3-1) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team upload.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * New upstream version</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> -- Steffen Moeller <moeller@debian.org> Wed, 02 Sep 2020 20:16:06 +0200</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">kma (1.3.2-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> * Team upload.</span>
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<a href="https://salsa.debian.org/med-team/kma/-/compare/4ad339db652cf28df3ea7bed5195c7b772b473b1...fdd0500f316478b0062463fbcc0b7c3952470c40#1fa9be53365c168355414c67a78869ee9befb877"><strong>dist.c</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -233,11 +233,11 @@ void kmerSimilarity_thread(HashMapKMA *DB, Matrix *Dist, int *N, int thread_num,</td>
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<pre style="margin: 0;"> <span id="LC233" class="line" lang="c"> <span class="n" style="color: #333;">el</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">DB</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">v_index</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">UINT_MAX</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="c"> <span class="n" style="color: #333;">vs</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">DB</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">DB_size</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">USHRT_MAX</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC235" class="line" lang="c"> <span class="n" style="color: #333;">D</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Dist</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">mat</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC236" class="line" lang="c"> <span class="n" style="color: #333;">chunk</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1<span class="idiff left right">024</span></span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC236" class="line" lang="c"> <span class="n" style="color: #333;">chunk</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1<span class="idiff left right">31072</span></span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC237" class="line" lang="c"> <span class="n" style="color: #333;">size</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">((</span><span class="n" style="color: #333;">DB</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">size</span> <span class="o" style="font-weight: 600;">-</span> <span class="mi" style="color: #099;">1</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">DB</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">mask</span><span class="p">)</span> <span class="o" style="font-weight: 600;">?</span> <span class="n" style="color: #333;">DB</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">size</span> <span class="o" style="font-weight: 600;">:</span> <span class="n" style="color: #333;">DB</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">n</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC238" class="line" lang="c"> </span>
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<pre style="margin: 0;"> <span id="LC239" class="line" lang="c"> <span class="cm" style="color: #998; font-style: italic;">/* static init */</span></span>
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<pre style="margin: 0;">-<span id="LC240" class="line" lang="c"> <span class="n" style="color: #333;">lock</span><span class="p"><span class="idiff left">(</span></span><span class="n" style="color: #333;"><span class="idiff right">lock</span></span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC240" class="line" lang="c"> <span class="n" style="color: #333;">lock<span class="idiff left">Time</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">lock</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff right">10</span></span><span class="p">);</span></span>
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241
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241
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<pre style="margin: 0;"> <span id="LC241" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">thread_wait</span><span class="p">)</span> <span class="p">{</span></span>
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242
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242
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<pre style="margin: 0;"> <span id="LC242" class="line" lang="c"> <span class="n" style="color: #333;">thread_wait</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">thread_num</span><span class="p">;</span></span>
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243
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243
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<pre style="margin: 0;"> <span id="LC243" class="line" lang="c"> <span class="n" style="color: #333;">next</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="249" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="249" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -249,7 +249,7 @@ void kmerSimilarity_thread(HashMapKMA *DB, Matrix *Dist, int *N, int thread_num,</td>
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249
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249
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="c"> <span class="cm" style="color: #998; font-style: italic;">/* get values */</span></span>
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250
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250
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<pre style="margin: 0;"> <span id="LC250" class="line" lang="c"> <span class="k" style="font-weight: 600;">while</span><span class="p">(</span><span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">chunk</span><span class="p">)</span> <span class="p">{</span></span>
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251
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251
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<pre style="margin: 0;"> <span id="LC251" class="line" lang="c"> <span class="cm" style="color: #998; font-style: italic;">/* get next chunk */</span></span>
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252
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<pre style="margin: 0;">-<span id="LC252" class="line" lang="c"> <span class="n" style="color: #333;">lock</span><span class="p"><span class="idiff left">(</span></span><span class="n" style="color: #333;"><span class="idiff right">lock</span></span><span class="p">);</span></span>
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252
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<pre style="margin: 0;">+<span id="LC252" class="line" lang="c"> <span class="n" style="color: #333;">lock<span class="idiff left">Time</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">lock</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff right">10</span></span><span class="p">);</span></span>
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253
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<pre style="margin: 0;"> <span id="LC253" class="line" lang="c"> <span class="n" style="color: #333;">pos</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">next</span><span class="p">;</span></span>
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254
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254
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<pre style="margin: 0;"> <span id="LC254" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">size</span> <span class="o" style="font-weight: 600;"><</span> <span class="p">(</span><span class="n" style="color: #333;">next</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">chunk</span><span class="p">))</span> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC255" class="line" lang="c"> <span class="n" style="color: #333;">next</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">size</span><span class="p">;</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="337" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -337,8 +337,8 @@ void printIntLtdPhy(char *outfile, Matrix *Dist, int *N, FILE *name_file, Qseqs</td>
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337
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<pre style="margin: 0;"> <span id="LC337" class="line" lang="c"> </span>
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338
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<pre style="margin: 0;"> <span id="LC338" class="line" lang="c"> <span class="cm" style="color: #998; font-style: italic;">/* init */</span></span>
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339
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<pre style="margin: 0;"> <span id="LC339" class="line" lang="c"> <span class="n" style="color: #333;">D</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Dist</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">mat</span><span class="p">;</span></span>
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340
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<pre style="margin: 0;">-<span id="LC340" class="line" lang="c"> <span class="n" style="color: #333;">chunk</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;"><span class="idiff left right">104857</span>6</span><span class="p">;</span></span>
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341
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<pre style="margin: 0;">-<span id="LC341" class="line" lang="c"> <span class="n" style="color: #333;">lock</span><span class="p"><span class="idiff left">(</span></span><span class="n" style="color: #333;"><span class="idiff right">lock</span></span><span class="p">);</span></span>
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340
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<pre style="margin: 0;">+<span id="LC340" class="line" lang="c"> <span class="n" style="color: #333;">chunk</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;"><span class="idiff left right">6553</span>6</span><span class="p">;</span></span>
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341
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<pre style="margin: 0;">+<span id="LC341" class="line" lang="c"> <span class="n" style="color: #333;">lock<span class="idiff left">Time</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">lock</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff right">10</span></span><span class="p">);</span></span>
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342
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<pre style="margin: 0;"> <span id="LC342" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">row_bias</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC343" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">format</span> <span class="o" style="font-weight: 600;">&</span> <span class="mi" style="color: #099;">4</span><span class="p">)</span> <span class="p">{</span></span>
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344
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<pre style="margin: 0;"> <span id="LC344" class="line" lang="c"> <span class="n" style="color: #333;">row_bias</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">sprintf</span><span class="p">(</span><span class="n" style="color: #333;">outfile</span><span class="p">,</span> <span class="s" style="color: #d14;">"# %-35s</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span> <span class="n" style="color: #333;">method</span><span class="p">);</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="361" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -361,9 +361,11 @@ void printIntLtdPhy(char *outfile, Matrix *Dist, int *N, FILE *name_file, Qseqs</td>
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361
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361
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<pre style="margin: 0;"> <span id="LC361" class="line" lang="c"> <span class="n" style="color: #333;">unlock</span><span class="p">(</span><span class="n" style="color: #333;">lock</span><span class="p">);</span></span>
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362
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362
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<pre style="margin: 0;"> <span id="LC362" class="line" lang="c"> </span>
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363
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363
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<pre style="margin: 0;"> <span id="LC363" class="line" lang="c"> <span class="k" style="font-weight: 600;">while</span><span class="p">(</span><span class="n" style="color: #333;">next_i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">Dist</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">n</span><span class="p">)</span> <span class="p">{</span></span>
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364
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<pre style="margin: 0;">-<span id="LC364" class="line" lang="c"> <span class="n" style="color: #333;">lock</span><span class="p"><span class="idiff left">(</span></span><span class="n" style="color: #333;"><span class="idiff right">lock</span></span><span class="p">);</span></span>
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364
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<pre style="margin: 0;">+<span id="LC364" class="line" lang="c"> <span class="n" style="color: #333;">lock<span class="idiff left">Time</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">lock</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff right">10</span></span><span class="p">);</span></span>
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365
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<pre style="margin: 0;"> <span id="LC365" class="line" lang="c"> <span class="cm" style="color: #998; font-style: italic;">/* check for new row */</span></span>
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366
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<pre style="margin: 0;">-<span id="LC366" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">next_i</span> <span class="o" style="font-weight: 600;"><=</span> <span class="n" style="color: #333;">next_j</span><span class="p">)</span> <span class="p">{</span></span>
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366
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<pre style="margin: 0;">+<span id="LC366" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">Dist</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;"><=</span> <span class="n" style="color: #333;">next_i</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC367" class="line" lang="c"> <span class="n" style="color: #333;">chunk</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC368" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">next_i</span> <span class="o" style="font-weight: 600;"><=</span> <span class="n" style="color: #333;">next_j</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC369" class="line" lang="c"> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">next_i</span><span class="p">;</span></span>
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368
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<pre style="margin: 0;"> <span id="LC370" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC371" class="line" lang="c"> <span class="n" style="color: #333;">row_bias</span> <span class="o" style="font-weight: 600;">+=</span> <span class="p">(</span><span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">-</span> <span class="mi" style="color: #099;">1</span><span class="p">)</span> <span class="o" style="font-weight: 600;">*</span> <span class="mi" style="color: #099;">11</span><span class="p">;</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -404,7 +406,7 @@ void printIntLtdPhy(char *outfile, Matrix *Dist, int *N, FILE *name_file, Qseqs</td>
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<pre style="margin: 0;"> <span id="LC406" class="line" lang="c"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC407" class="line" lang="c"> </span>
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406
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<pre style="margin: 0;"> <span id="LC408" class="line" lang="c"> <span class="cm" style="color: #998; font-style: italic;">/* wait for matrix to finish */</span></span>
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<pre style="margin: 0;">-<span id="LC407" class="line" lang="c"> <span class="n" style="color: #333;">lock</span><span class="p"><span class="idiff left">(</span></span><span class="n" style="color: #333;"><span class="idiff right">lock</span></span><span class="p">);</span></span>
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409
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<pre style="margin: 0;">+<span id="LC409" class="line" lang="c"> <span class="n" style="color: #333;">lock<span class="idiff left">Time</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">lock</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff right">10</span></span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC410" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="o" style="font-weight: 600;">--*</span><span class="n" style="color: #333;">thread_wait</span><span class="p">)</span> <span class="p">{</span></span>
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409
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<pre style="margin: 0;"> <span id="LC411" class="line" lang="c"> <span class="n" style="color: #333;">unlock</span><span class="p">(</span><span class="n" style="color: #333;">lock</span><span class="p">);</span></span>
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412
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<pre style="margin: 0;"> <span id="LC412" class="line" lang="c"> <span class="n" style="color: #333;">wait_atomic</span><span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">thread_wait</span><span class="p">);</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="468" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -466,8 +468,8 @@ void printDoublePhy(char *outfile, Matrix *Dist, int *N, FILE *name_file, Qseqs</td>
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<pre style="margin: 0;"> <span id="LC468" class="line" lang="c"> </span>
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467
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469
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<pre style="margin: 0;"> <span id="LC469" class="line" lang="c"> <span class="cm" style="color: #998; font-style: italic;">/* init */</span></span>
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<pre style="margin: 0;"> <span id="LC470" class="line" lang="c"> <span class="n" style="color: #333;">D</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Dist</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">mat</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC469" class="line" lang="c"> <span class="n" style="color: #333;">chunk</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;"><span class="idiff left right">104857</span>6</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC470" class="line" lang="c"> <span class="n" style="color: #333;">lock</span><span class="p"><span class="idiff left">(</span></span><span class="n" style="color: #333;"><span class="idiff right">lock</span></span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC471" class="line" lang="c"> <span class="n" style="color: #333;">chunk</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;"><span class="idiff left right">6553</span>6</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC472" class="line" lang="c"> <span class="n" style="color: #333;">lock<span class="idiff left">Time</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">lock</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff right">10</span></span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC473" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">row_bias</span><span class="p">)</span> <span class="p">{</span></span>
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474
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<pre style="margin: 0;"> <span id="LC474" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">format</span> <span class="o" style="font-weight: 600;">&</span> <span class="mi" style="color: #099;">4</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC475" class="line" lang="c"> <span class="n" style="color: #333;">row_bias</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">sprintf</span><span class="p">(</span><span class="n" style="color: #333;">outfile</span><span class="p">,</span> <span class="s" style="color: #d14;">"# %-35s</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span> <span class="n" style="color: #333;">method</span><span class="p">);</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="490" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="492" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -490,9 +492,11 @@ void printDoublePhy(char *outfile, Matrix *Dist, int *N, FILE *name_file, Qseqs</td>
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<pre style="margin: 0;"> <span id="LC492" class="line" lang="c"> <span class="n" style="color: #333;">unlock</span><span class="p">(</span><span class="n" style="color: #333;">lock</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC493" class="line" lang="c"> </span>
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<pre style="margin: 0;"> <span id="LC494" class="line" lang="c"> <span class="k" style="font-weight: 600;">while</span><span class="p">(</span><span class="n" style="color: #333;">next_i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">Dist</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">n</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC493" class="line" lang="c"> <span class="n" style="color: #333;">lock</span><span class="p"><span class="idiff left">(</span></span><span class="n" style="color: #333;"><span class="idiff right">lock</span></span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC495" class="line" lang="c"> <span class="n" style="color: #333;">lock<span class="idiff left">Time</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">lock</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff right">10</span></span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC496" class="line" lang="c"> <span class="cm" style="color: #998; font-style: italic;">/* check for new row */</span></span>
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<pre style="margin: 0;">-<span id="LC495" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">((</span><span class="n" style="color: #333;">ltd</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">next_i</span> <span class="o" style="font-weight: 600;"><=</span> <span class="n" style="color: #333;">next_j</span><span class="p">)</span> <span class="o" style="font-weight: 600;">||</span> <span class="p">(</span><span class="n" style="color: #333;">Dist</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;"><=</span> <span class="n" style="color: #333;">next_j</span><span class="p">))</span> <span class="p">{</span></span>
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497
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<pre style="margin: 0;">+<span id="LC497" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">Dist</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;"><=</span> <span class="n" style="color: #333;">next_i</span><span class="p">)</span> <span class="p">{</span></span>
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498
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<pre style="margin: 0;">+<span id="LC498" class="line" lang="c"> <span class="n" style="color: #333;">chunk</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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499
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<pre style="margin: 0;">+<span id="LC499" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span><span class="p">((</span><span class="n" style="color: #333;">ltd</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">next_i</span> <span class="o" style="font-weight: 600;"><=</span> <span class="n" style="color: #333;">next_j</span><span class="p">)</span> <span class="o" style="font-weight: 600;">||</span> <span class="p">(</span><span class="n" style="color: #333;">Dist</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;"><=</span> <span class="n" style="color: #333;">next_j</span><span class="p">))</span> <span class="p">{</span></span>
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496
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500
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<pre style="margin: 0;"> <span id="LC500" class="line" lang="c"> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">next_i</span><span class="p">;</span></span>
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497
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501
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<pre style="margin: 0;"> <span id="LC501" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="p">)</span> <span class="p">{</span></span>
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498
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502
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<pre style="margin: 0;"> <span id="LC502" class="line" lang="c"> <span class="n" style="color: #333;">row_bias</span> <span class="o" style="font-weight: 600;">+=</span> <span class="p">(</span><span class="n" style="color: #333;">ltd</span> <span class="o" style="font-weight: 600;">?</span> <span class="p">(</span><span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">-</span> <span class="mi" style="color: #099;">1</span><span class="p">)</span> <span class="o" style="font-weight: 600;">:</span> <span class="n" style="color: #333;">Dist</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">n</span><span class="p">)</span> <span class="o" style="font-weight: 600;">*</span> <span class="mi" style="color: #099;">11</span><span class="p">;</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="557" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="561" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -557,7 +561,7 @@ void printDoublePhy(char *outfile, Matrix *Dist, int *N, FILE *name_file, Qseqs</td>
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557
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561
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<pre style="margin: 0;"> <span id="LC561" class="line" lang="c"> <span class="p">}</span></span>
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558
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562
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<pre style="margin: 0;"> <span id="LC562" class="line" lang="c"> </span>
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559
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563
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<pre style="margin: 0;"> <span id="LC563" class="line" lang="c"> <span class="cm" style="color: #998; font-style: italic;">/* wait for matrix to finish */</span></span>
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560
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<pre style="margin: 0;">-<span id="LC560" class="line" lang="c"> <span class="n" style="color: #333;">lock</span><span class="p"><span class="idiff left">(</span></span><span class="n" style="color: #333;"><span class="idiff right">lock</span></span><span class="p">);</span></span>
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564
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<pre style="margin: 0;">+<span id="LC564" class="line" lang="c"> <span class="n" style="color: #333;">lock<span class="idiff left">Time</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">lock</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff right">10</span></span><span class="p">);</span></span>
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561
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565
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<pre style="margin: 0;"> <span id="LC565" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="o" style="font-weight: 600;">--*</span><span class="n" style="color: #333;">thread_wait</span><span class="p">)</span> <span class="p">{</span></span>
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562
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566
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<pre style="margin: 0;"> <span id="LC566" class="line" lang="c"> <span class="n" style="color: #333;">unlock</span><span class="p">(</span><span class="n" style="color: #333;">lock</span><span class="p">);</span></span>
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563
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567
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<pre style="margin: 0;"> <span id="LC567" class="line" lang="c"> <span class="n" style="color: #333;">wait_atomic</span><span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">thread_wait</span><span class="p">);</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="620" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="624" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -620,7 +624,7 @@ char * mfile(FILE *outfile, long unsigned size) {</td>
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620
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624
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<pre style="margin: 0;"> <span id="LC624" class="line" lang="c"> <span class="n" style="color: #333;">ERROR</span><span class="p">();</span></span>
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621
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625
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<pre style="margin: 0;"> <span id="LC625" class="line" lang="c"> <span class="p">}</span></span>
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622
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626
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<pre style="margin: 0;"> <span id="LC626" class="line" lang="c"> <span class="n" style="color: #333;">rewind</span><span class="p">(</span><span class="n" style="color: #333;">outfile</span><span class="p">);</span></span>
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623
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<pre style="margin: 0;">-<span id="LC623" class="line" lang="c"> <span class="n" style="color: #333;">outfileM</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">mmap</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">size</span><span class="p">,</span> <span class="n" style="color: #333;">PROT_<span class="idiff left">READ</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">|</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">PROT_</span>WRITE</span><span class="p">,</span> <span class="n" style="color: #333;">MAP_SHARED</span><span class="p">,</span> <span class="n" style="color: #333;">fileno</span><span class="p">(</span><span class="n" style="color: #333;">outfile</span><span class="p">),</span> <span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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627
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<pre style="margin: 0;">+<span id="LC627" class="line" lang="c"> <span class="n" style="color: #333;">outfileM</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">mmap</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">size</span><span class="p">,</span> <span class="n" style="color: #333;">PROT_WRITE</span><span class="p">,</span> <span class="n" style="color: #333;">MAP_SHARED</span><span class="p">,</span> <span class="n" style="color: #333;">fileno</span><span class="p">(</span><span class="n" style="color: #333;">outfile</span><span class="p">),</span> <span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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624
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628
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<pre style="margin: 0;"> <span id="LC628" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">outfileM</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">MAP_FAILED</span><span class="p">)</span> <span class="p">{</span></span>
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625
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629
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<pre style="margin: 0;"> <span id="LC629" class="line" lang="c"> <span class="n" style="color: #333;">ERROR</span><span class="p">();</span></span>
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626
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630
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<pre style="margin: 0;"> <span id="LC630" class="line" lang="c"> <span class="p">}</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="836" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -832,7 +836,9 @@ void runDist(char *templatefilename, char *outputfilename, int flag, int format,</td>
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832
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836
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<pre style="margin: 0;"> <span id="LC836" class="line" lang="c"> <span class="n" style="color: #333;">free</span><span class="p">(</span><span class="n" style="color: #333;">threads</span><span class="p">);</span></span>
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833
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837
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<pre style="margin: 0;"> <span id="LC837" class="line" lang="c"> <span class="n" style="color: #333;">threads</span> <span class="o" style="font-weight: 600;">=</span> <span class="kr" style="font-weight: 600;">thread</span><span class="p">;</span></span>
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834
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838
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<pre style="margin: 0;"> <span id="LC838" class="line" lang="c"> <span class="p">}</span></span>
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<td class="diff-line-num old old_line" data-linenumber="835" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
835
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<pre style="margin: 0;">-<span id="LC835" class="line" lang="c"> <span class="n" style="color: #333;">munmap</span><span class="p">(</span><span class="n" style="color: #333;">outfileM</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">out_size</span><span class="p">,</span> <span class="n" style="color: #333;">out_size</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="839" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
839
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<pre style="margin: 0;">+<span id="LC839" class="line" lang="c"> <span class="n" style="color: #333;">outfileM</span> <span class="o" style="font-weight: 600;">-=</span> <span class="n" style="color: #333;">out_size</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="840" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
840
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<pre style="margin: 0;">+<span id="LC840" class="line" lang="c"> <span class="n" style="color: #333;">msync</span><span class="p">(</span><span class="n" style="color: #333;">outfileM</span><span class="p">,</span> <span class="n" style="color: #333;">out_size</span><span class="p">,</span> <span class="n" style="color: #333;">MS_SYNC</span><span class="p">);</span></span>
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841
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<pre style="margin: 0;">+<span id="LC841" class="line" lang="c"> <span class="n" style="color: #333;">munmap</span><span class="p">(</span><span class="n" style="color: #333;">outfileM</span><span class="p">,</span> <span class="n" style="color: #333;">out_size</span><span class="p">);</span></span>
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836
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842
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<pre style="margin: 0;"> <span id="LC842" class="line" lang="c"> <span class="n" style="color: #333;">fclose</span><span class="p">(</span><span class="n" style="color: #333;">outfile</span><span class="p">);</span></span>
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837
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843
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<pre style="margin: 0;"> <span id="LC843" class="line" lang="c"> <span class="n" style="color: #333;">fclose</span><span class="p">(</span><span class="n" style="color: #333;">name_file</span><span class="p">);</span></span>
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838
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844
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<pre style="margin: 0;"> <span id="LC844" class="line" lang="c"> <span class="n" style="color: #333;">free</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">);</span></span>
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<a href="https://salsa.debian.org/med-team/kma/-/compare/4ad339db652cf28df3ea7bed5195c7b772b473b1...fdd0500f316478b0062463fbcc0b7c3952470c40#43638494320234f912fa37977d784743664b2c37"><strong>matrix.c</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -148,7 +148,11 @@ void Matrix_destroy(Matrix *src) {</td>
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148
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148
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="c"></span>
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149
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149
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="c"><span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="nf" style="color: #900; font-weight: 600;">Matrix_mdestroy</span><span class="p">(</span><span class="n" style="color: #333;">Matrix</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">src</span><span class="p">)</span> <span class="p">{</span></span>
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150
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150
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="c"> </span>
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151
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<pre style="margin: 0;">-<span id="LC151" class="line" lang="c"> <span class="n" style="color: #333;">munmap</span><span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">src</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">mat</span><span class="p">),</span> <span class="n" style="color: #333;">src</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">size</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">src</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">size</span> <span class="o" style="font-weight: 600;">*</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span><span class="p">)</span> <span class="o" style="font-weight: 600;">/</span> <span class="mi" style="color: #099;">2</span><span class="p">);</span></span>
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151
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="n" style="color: #333;">size</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="c"> </span>
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="c"> <span class="n" style="color: #333;">size</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">src</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">size</span> <span class="o" style="font-weight: 600;">*</span> <span class="p">(</span><span class="n" style="color: #333;">src</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">size</span> <span class="o" style="font-weight: 600;">-</span> <span class="mi" style="color: #099;">1</span><span class="p">)</span> <span class="o" style="font-weight: 600;">*</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span><span class="p">)</span> <span class="o" style="font-weight: 600;">/</span> <span class="mi" style="color: #099;">2</span><span class="p">;</span></span>
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154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="c"> <span class="n" style="color: #333;">msync</span><span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">src</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">mat</span><span class="p">),</span> <span class="n" style="color: #333;">size</span><span class="p">,</span> <span class="n" style="color: #333;">MS_SYNC</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="c"> <span class="n" style="color: #333;">munmap</span><span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">src</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">mat</span><span class="p">),</span> <span class="n" style="color: #333;">size</span><span class="p">);</span></span>
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152
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156
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="c"> <span class="n" style="color: #333;">free</span><span class="p">(</span><span class="n" style="color: #333;">src</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">mat</span><span class="p">);</span></span>
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153
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157
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<pre style="margin: 0;"> <span id="LC157" class="line" lang="c"> <span class="n" style="color: #333;">free</span><span class="p">(</span><span class="n" style="color: #333;">src</span><span class="p">);</span></span>
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154
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="c"><span class="p">}</span></span>
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<a href="https://salsa.debian.org/med-team/kma/-/compare/4ad339db652cf28df3ea7bed5195c7b772b473b1...fdd0500f316478b0062463fbcc0b7c3952470c40#97e3379ce2e33418ea5b83d3faaf35326b973d41"><strong>nw.c</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="68" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="68" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -68,7 +68,7 @@ AlnScore NW(const long unsigned *template, const unsigned char *queryOrg, int k,</td>
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68
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="c"> <span class="n" style="color: #333;">aligned</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">s</span><span class="p">[</span><span class="n" style="color: #333;">t_len</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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69
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69
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="c"> <span class="n" style="color: #333;">memset</span><span class="p">(</span><span class="n" style="color: #333;">aligned</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">q</span><span class="p">,</span> <span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="n" style="color: #333;">t_len</span><span class="p">);</span></span>
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70
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70
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="c"> <span class="n" style="color: #333;">m</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">t_len</span><span class="p">;</span></span>
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71
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="c"> <span class="n" style="color: #333;">nuc_pos</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left right">t_e</span></span> <span class="o" style="font-weight: 600;">-</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="c"> <span class="n" style="color: #333;">nuc_pos</span> <span class="o" style="font-weight: 600;">=</span> <span class="p"><span class="idiff left">(</span></span><span class="n" style="color: #333;"><span class="idiff">t_e</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">?</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">t_e</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">:</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">aligned</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-></span></span><span class="n" style="color: #333;"><span class="idiff">pos</span></span><span class="p"><span class="idiff right">)</span></span> <span class="o" style="font-weight: 600;">-</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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72
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="c"> <span class="k" style="font-weight: 600;">while</span><span class="p">(</span><span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">--</span><span class="p">)</span> <span class="p">{</span></span>
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73
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73
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="c"> <span class="n" style="color: #333;">aligned</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">t</span><span class="p">[</span><span class="n" style="color: #333;">m</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">getNuc</span><span class="p">(</span><span class="n" style="color: #333;">template</span><span class="p">,</span> <span class="n" style="color: #333;">nuc_pos</span><span class="p">);</span></span>
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74
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="o" style="font-weight: 600;">--</span><span class="n" style="color: #333;">nuc_pos</span> <span class="o" style="font-weight: 600;"><</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -157,7 +157,6 @@ AlnScore NW(const long unsigned *template, const unsigned char *queryOrg, int k,</td>
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157
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157
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<pre style="margin: 0;"> <span id="LC157" class="line" lang="c"> </span>
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158
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158
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="c"> <span class="n" style="color: #333;">D_ptr</span><span class="p">[</span><span class="n" style="color: #333;">q_len</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="mi" style="color: #099;">0</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">k</span><span class="p">)</span> <span class="o" style="font-weight: 600;">?</span> <span class="mi" style="color: #099;">0</span> <span class="o" style="font-weight: 600;">:</span> <span class="p">(</span><span class="n" style="color: #333;">W1</span> <span class="o" style="font-weight: 600;">+</span> <span class="p">(</span><span class="n" style="color: #333;">t_len</span> <span class="o" style="font-weight: 600;">-</span> <span class="mi" style="color: #099;">1</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">m</span><span class="p">)</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">U</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC159" class="line" lang="c"> <span class="n" style="color: #333;">Q_prev</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">t_len</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">q_len</span><span class="p">)</span> <span class="o" style="font-weight: 600;">*</span> <span class="p">(</span><span class="n" style="color: #333;">MM</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">U</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">W1</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC160" class="line" lang="c"> </span>
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="c"> <span class="n" style="color: #333;">t_nuc</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">getNuc</span><span class="p">(</span><span class="n" style="color: #333;">template</span><span class="p">,</span> <span class="n" style="color: #333;">nuc_pos</span><span class="p">);</span></span>
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162
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<pre style="margin: 0;"> <span id="LC161" class="line" lang="c"> <span class="k" style="font-weight: 600;">for</span><span class="p">(</span><span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">q_len</span> <span class="o" style="font-weight: 600;">-</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">>=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="o" style="font-weight: 600;">--</span><span class="n" style="color: #333;">n</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="c"> <span class="n" style="color: #333;">E_ptr</span><span class="p">[</span><span class="n" style="color: #333;">n</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="344" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -344,7 +343,7 @@ AlnScore NW_band(const long unsigned *template, const unsigned char *queryOrg, i</td>
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344
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<pre style="margin: 0;"> <span id="LC343" class="line" lang="c"> <span class="n" style="color: #333;">aligned</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">s</span><span class="p">[</span><span class="n" style="color: #333;">t_len</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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345
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<pre style="margin: 0;"> <span id="LC344" class="line" lang="c"> <span class="n" style="color: #333;">memset</span><span class="p">(</span><span class="n" style="color: #333;">aligned</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">q</span><span class="p">,</span> <span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="n" style="color: #333;">t_len</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC345" class="line" lang="c"> <span class="n" style="color: #333;">m</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">t_len</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC347" class="line" lang="c"> <span class="n" style="color: #333;">nuc_pos</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left right">t_e</span></span> <span class="o" style="font-weight: 600;">-</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC346" class="line" lang="c"> <span class="n" style="color: #333;">nuc_pos</span> <span class="o" style="font-weight: 600;">=</span> <span class="p"><span class="idiff left">(</span></span><span class="n" style="color: #333;"><span class="idiff">t_e</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">?</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">t_e</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">:</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">aligned</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-></span></span><span class="n" style="color: #333;"><span class="idiff">pos</span></span><span class="p"><span class="idiff right">)</span></span> <span class="o" style="font-weight: 600;">-</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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348
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<pre style="margin: 0;"> <span id="LC347" class="line" lang="c"> <span class="k" style="font-weight: 600;">while</span><span class="p">(</span><span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">--</span><span class="p">)</span> <span class="p">{</span></span>
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349
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348
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<pre style="margin: 0;"> <span id="LC348" class="line" lang="c"> <span class="n" style="color: #333;">aligned</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">t</span><span class="p">[</span><span class="n" style="color: #333;">m</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">getNuc</span><span class="p">(</span><span class="n" style="color: #333;">template</span><span class="p">,</span> <span class="n" style="color: #333;">nuc_pos</span><span class="p">);</span></span>
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349
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<pre style="margin: 0;"> <span id="LC349" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="o" style="font-weight: 600;">--</span><span class="n" style="color: #333;">nuc_pos</span> <span class="o" style="font-weight: 600;"><</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span> <span class="p">{</span></span>
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<a href="https://salsa.debian.org/med-team/kma/-/compare/4ad339db652cf28df3ea7bed5195c7b772b473b1...fdd0500f316478b0062463fbcc0b7c3952470c40#2d1dba06c7f4b4c2f13e05d40a391d5330c68ce4"><strong>version.h</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -17,4 +17,4 @@</td>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * limitations under the License.</span></span>
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18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">*/</span></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define KMA_VERSION "1.3.<span class="idiff left right">2</span>"</span></span></pre>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define KMA_VERSION "1.3.<span class="idiff left right">3</span>"</span></span></pre>
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