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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/nanostat">Debian Med / nanostat</a>
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<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/nanostat/-/commit/ac52ba8ee3724f0353c821b3596cdef7860942af">ac52ba8e</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2020-09-03T22:00:14+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Added man page - exchanged on lintian warning for another
Leaving
W: python3-nanostat: useless-whatis-entry usr/share/man/man1/NanoStat.1.gz
for now
</pre>
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<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#68e0b13744e158347bfd74ebaaca667435f07d14">
<span class="new-file">
+
debian/manpages
</span>
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/nanostat/-/commit/ac52ba8ee3724f0353c821b3596cdef7860942af#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -20,3 +20,17 @@ Description: statistics on long biological sequences</td>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> dataset in fastq, bam or albacore sequencing summary format.</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> It is meant to augment pipelines for the interpretation of</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> long DNA sequences as generated with the Nanopore.</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> This package provides the Python module of NanoStat.</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext">Package: nanostat</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext">Architecture: all</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext">Depends: ${python3:Depends}, ${misc:Depends},</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> python3-nanostat</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext">Description: statistics on long biological sequences</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> NanoStat calculates various statistics from a long read sequencing</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> dataset in fastq, bam or albacore sequencing summary format.</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> It is meant to augment pipelines for the interpretation of</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> long DNA sequences as generated with the Nanopore.</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> This package provides the executable NanoStat.</span></pre>
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<a href="https://salsa.debian.org/med-team/nanostat/-/commit/ac52ba8ee3724f0353c821b3596cdef7860942af#68e0b13744e158347bfd74ebaaca667435f07d14"><strong>debian/manpages</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">NanoStat.1</span></pre>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/nanostat/-/commit/ac52ba8ee3724f0353c821b3596cdef7860942af#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">#!/usr/bin/make -f</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext"># See debhelper(7) (uncomment to enable)</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"># output every command that modifies files on the build system.</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">#export DH_VERBOSE = 1</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">export DH_VERBOSE = 1</span>
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5
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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6
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">export PYBUILD_NAME=nanostat</span>
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7
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"></span>
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8
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">%:</span>
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9
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8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> dh $@ --with python3 --buildsystem=pybuild</span>
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10
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">override_dh_auto_install:</span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> dh_auto_install</span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> mkdir -p debian/nanostat/usr</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> mv debian/python3-nanostat/usr/bin debian/nanostat/usr/</span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> PYTHONPATH=debian/python3-nanostat/usr/lib/python3.8/dist-packages/:debian/python3-nanostat/usr/lib/python3/dist-packages/ help2man ./debian/nanostat/usr/bin/NanoStat > NanoStat.1</span>
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11
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15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"># If you need to rebuild the Sphinx documentation</span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"># Add sphinxdoc to the dh --with line</span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext">#</span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"># And uncomment the following lines</span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext">#override_dh_auto_build: export http_proxy=127.0.0.1:9</span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext">#override_dh_auto_build: export https_proxy=127.0.0.1:9</span>
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18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext">#override_dh_auto_build:</span>
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19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"># dh_auto_build</span>
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20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"># PYTHONPATH=. python3 -m sphinx -N -bhtml \</span>
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21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"># docs/ build/html # HTML generator</span>
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22
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"># PYTHONPATH=. python3 -m sphinx -N -bman \</span>
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23
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"># docs/ build/man # Manpage generator</span></pre>
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">override_dh_auto_clean:</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> dh_auto_clean</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> rm -f NanoStat.1</span></pre>
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