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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/bdc4023979d850ffb810f83efc9c519b872ca25c">bdc40239</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-09-04T13:45:27+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/bdc4023979d850ffb810f83efc9c519b872ca25c#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Fri, 04 Sep 2020 <span class="idiff left right">01</span>:42:04 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Fri, 04 Sep 2020 <span class="idiff left right">13</span>:42:04 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> dcmtk | 160 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | <span class="idiff left right">90</span> | {practice,covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | <span class="idiff left right">89</span> | {practice,covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 48 | {his,laboratory,covid-19,imaging,practice,oncology} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> gdcm | 3<span class="idiff left right">4</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> gdcm | 3<span class="idiff left right">5</span> | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> dicom3tools | 26 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> dicomscope | 2<span class="idiff left right">3</span> | {imaging} | </span>
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<td class="diff-line-num old old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> htsjdk | 2<span class="idiff left right">2</span> | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> dicomscope | 2<span class="idiff left right">4</span> | {imaging} | </span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> htsjdk | 2<span class="idiff left right">4</span> | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> gnumed-server | 19 | {covid-19,practice} | </span>
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<td class="diff-line-num old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> gdcm | 16 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> ngs-sdk | 13 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> invesalius | 12 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> minc-tools | 12 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> dcm2niix | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> gdcm | 11 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> <span class="idiff left right">ngs-sdk | 11 | {bio-dev}</span> | </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> <span class="idiff left right">adun.app | 10 | {bio} </span> | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> insighttoolkit4 | 10 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> openslide | 10 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> adun.app | 9 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> fastlink | 9 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> ngs-sdk | 9 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> nifticlib | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> nifticlib | 9 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> nifticlib | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> pixelmed | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> treeview | 9 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> dicompyler | 8 | {oncology} | </span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> ea-utils | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> librg-utils-perl | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> melting | 8 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> obitools | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> plastimatch | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> biosig4c++ | 7 | {physics,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"> dicompyler | 7 | {oncology} | </span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> ea-utils | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> king | 7 | {typesetting,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> libncl | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> orthanc-webviewer | 7 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> staden | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> biojava-live | 6 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> edtsurf | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> ipig | 6 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -42,6 +43,7 @@ Last-Update: Fri, 04 Sep 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> libdivsufsort | 6 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> multiqc | 6 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> pymia | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> salmon | 6 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> vtk-dicom | 6 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> anfo | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> bart-view | 5 | {imaging} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -51,6 +53,7 @@ Last-Update: Fri, 04 Sep 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 5 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> mauve-aligner | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> mipe | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> neobio | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> orthanc-dicomweb | 5 | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> phast | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> phyutility | 5 | {bio,cloud} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -60,10 +63,8 @@ Last-Update: Fri, 04 Sep 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> rdp-alignment | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> rdp-classifier | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> saint | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="plaintext"> salmon | 5 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> sibsim4 | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> spread-phy | 5 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">-<span id="LC66" class="line" lang="plaintext"> staden | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> zalign | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> alter-sequence-alignment | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> arden | 4 | {cloud,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -77,9 +78,9 @@ Last-Update: Fri, 04 Sep 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> libpal-java | 4 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> metaphlan2 | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> microbegps | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC80" class="line" lang="plaintext"> neobio | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> orthanc-mysql | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"> orthanc-postgresql | 4 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="plaintext"> oscar | 4 | {data,practice,tools} | </span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> paraclu | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> perm | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> prime-phylo | 4 | {cloud,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -96,7 +97,6 @@ Last-Update: Fri, 04 Sep 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext"> elastix | 3 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> gatb-core | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> jellyfish1 | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC99" class="line" lang="plaintext"> lagan | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="plaintext"> lamarc | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> libsbml | 3 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> logol | 3 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -104,7 +104,6 @@ Last-Update: Fri, 04 Sep 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> mrs | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext"> murasaki | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext"> nutsqlite | 3 | {tools} | </span>
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<pre style="margin: 0;">-<span id="LC107" class="line" lang="plaintext"> oscar | 3 | {data,practice,tools} | </span>
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107
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> phybin | 3 | {bio} | </span>
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109
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108
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> placnet | 3 | {bio} | </span>
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109
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext"> prottest | 3 | {bio,bio-phylogeny} | </span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="128" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -129,6 +128,7 @@ Last-Update: Fri, 04 Sep 2020 01:42:04 +0000</td>
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129
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128
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="plaintext"> getdata | 2 | {bio} | </span>
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130
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129
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="plaintext"> ghmm | 2 | {bio} | </span>
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131
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130
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="plaintext"> hinge | 2 | {bio} | </span>
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131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="plaintext"> lagan | 2 | {bio} | </span>
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132
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<pre style="margin: 0;"> <span id="LC132" class="line" lang="plaintext"> libctapimkt | 2 | {practice} | </span>
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="plaintext"> patman | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"> pbdagcon | 2 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="152" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -152,7 +152,7 @@ Last-Update: Fri, 04 Sep 2020 01:42:04 +0000</td>
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152
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<pre style="margin: 0;"> <span id="LC152" class="line" lang="plaintext"> emboss-explorer | 1 | {bio} | </span>
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153
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<pre style="margin: 0;"> <span id="LC153" class="line" lang="plaintext"> intake | 1 | {bio-dev,bio} | </span>
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<pre style="margin: 0;"> <span id="LC154" class="line" lang="plaintext"> libvistaio | 1 | {imaging-dev} | </span>
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155
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<pre style="margin: 0;">-<span id="LC155" class="line" lang="plaintext"> <span class="idiff left right">openslide | 1 | {imaging-dev}</span> | </span>
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="plaintext"> <span class="idiff left right">ngs-sdk | 1 | {bio-dev} </span> | </span>
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="plaintext"> opensurgsim | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC157" class="line" lang="plaintext"> q2templates | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="plaintext"> samblaster | 1 | {covid-19,bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="215" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -215,9 +215,9 @@ Last-Update: Fri, 04 Sep 2020 01:42:04 +0000</td>
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215
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215
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<pre style="margin: 0;"> <span id="LC215" class="line" lang="plaintext"> murasaki | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC216" class="line" lang="plaintext"> nanosv | 0 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC217" class="line" lang="plaintext"> ncbi-vdb | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC218" class="line" lang="plaintext"> ngs-sdk | 0 | {bio-dev} | </span>
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<td class="diff-line-num old_line" data-linenumber="219" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC218" class="line" lang="plaintext"> nifticlib | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="plaintext"> opencfu | 0 | {laboratory} | </span>
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<pre style="margin: 0;">+<span id="LC220" class="line" lang="plaintext"> openslide | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="plaintext"> orthanc-imagej | 0 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="plaintext"> papyrus | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="plaintext"> parallel-fastq-dump | 0 | {covid-19} | </span>
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