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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/mcaller">Debian Med / mcaller</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/mcaller/-/commit/5116e888737a0c7c7e949822a115c456f7a31abd">5116e888</a></strong>
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<span>by Steffen Möller</span>
<i>at 2020-09-05T22:57:27+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fixed pickles 2->3 transition (as suggested by Yaroslav)
</pre>
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<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#a513ae7946ecc441acbe503d01f239c9b0aae70e">
<span class="new-file">
+
debian/patches/pickl3latin.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/mcaller/-/commit/5116e888737a0c7c7e949822a115c456f7a31abd#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,35 +2,9 @@ mcaller (0.3+git20200621.90f6389-1) UNRELEASED; urgency=medium</td>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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3
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<td class="diff-line-num new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * Initial release (Closes: #969558)</span>
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4
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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5
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="mosel"> <span class="n" style="color: #333;">BLOCKER</span><span class="p">:</span></span>
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6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="mosel"></span>
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<td class="diff-line-num old old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
7
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="mosel"> <span class="p">$</span> <span class="p">./</span><span class="n" style="color: #333;">mCaller</span><span class="p">.</span><span class="n" style="color: #333;">py</span> <span class="p">-</span><span class="n" style="color: #333;">p</span> <span class="n" style="color: #333;">testdata</span><span class="p">/</span><span class="n" style="color: #333;">test_positions_A</span><span class="p">.</span><span class="n" style="color: #333;">txt</span> <span class="p">-</span><span class="n" style="color: #333;">r</span> <span class="n" style="color: #333;">testdata</span><span class="p">/</span><span class="n" style="color: #333;">pb_ecoli_polished_assembly</span><span class="p">.</span><span class="n" style="color: #333;">fasta</span> <span class="p">-</span><span class="n" style="color: #333;">e</span> <span class="n" style="color: #333;">testdata</span><span class="p">/</span><span class="n" style="color: #333;">masonread1</span><span class="p">.</span><span class="n" style="color: #333;">eventalign</span><span class="p">.</span><span class="n" style="color: #333;">tsv</span> <span class="p">-</span><span class="n" style="color: #333;">d</span> <span class="n" style="color: #333;">r95_twobase_model_NN_6_m6A</span><span class="p">.</span><span class="n" style="color: #333;">pkl</span> <span class="p">-</span><span class="n" style="color: #333;">f</span> <span class="n" style="color: #333;">testdata</span><span class="p">/</span><span class="n" style="color: #333;">masonread1</span><span class="p">.</span><span class="n" style="color: #333;">fastq</span></span>
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8
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="mosel"> <span class="n" style="color: #333;">testdata</span><span class="p">/</span></span>
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<td class="diff-line-num old old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="mosel"> <span class="m" style="color: #099;">1</span> <span class="n" style="color: #333;">contigs</span></span>
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<td class="diff-line-num old old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
10
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="mosel"> <span class="m" style="color: #099;">1</span> <span class="n" style="color: #333;">threads</span></span>
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<td class="diff-line-num old old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="mosel"> <span class="n" style="color: #333;">Traceback</span> <span class="p">(</span><span class="n" style="color: #333;">most</span> <span class="n" style="color: #333;">recent</span> <span class="n" style="color: #333;">call</span> <span class="n" style="color: #333;">last</span><span class="p">):</span></span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="mosel"> <span class="n" style="color: #333;">File</span> <span class="s2" style="color: #d14;">"./mCaller.py"</span><span class="p">,</span> <span class="n" style="color: #333;">line</span> <span class="m" style="color: #099;">188</span><span class="p">,</span> <span class="k" style="font-weight: 600;">in</span> <span class="p"><</span><span class="n" style="color: #333;">module</span><span class="p">></span></span>
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<td class="diff-line-num old old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="mosel"> <span class="n" style="color: #333;">main</span><span class="p">()</span></span>
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14
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="mosel"> <span class="n" style="color: #333;">File</span> <span class="s2" style="color: #d14;">"./mCaller.py"</span><span class="p">,</span> <span class="n" style="color: #333;">line</span> <span class="m" style="color: #099;">184</span><span class="p">,</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">main</span></span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="mosel"> <span class="n" style="color: #333;">distribute_threads</span><span class="p">(</span><span class="n" style="color: #333;">args</span><span class="p">.</span><span class="n" style="color: #333;">positions</span><span class="p">,</span><span class="n" style="color: #333;">args</span><span class="p">.</span><span class="n" style="color: #333;">motif</span><span class="p">,</span><span class="n" style="color: #333;">args</span><span class="p">.</span><span class="n" style="color: #333;">tsv</span><span class="p">,</span><span class="n" style="color: #333;">read2qual</span><span class="p">,</span><span class="n" style="color: #333;">args</span><span class="p">.</span><span class="n" style="color: #333;">reference</span><span class="p">,</span><span class="n" style="color: #333;">num_refs</span><span class="p">,</span><span class="n" style="color: #333;">base</span><span class="p">,</span><span class="k" style="font-weight: 600;">mod</span><span class="p">,</span><span class="n" style="color: #333;">args</span><span class="p">.</span><span class="n" style="color: #333;">threads</span><span class="p">,</span><span class="n" style="color: #333;">args</span><span class="p">.</span><span class="n" style="color: #333;">num_variables</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="mosel"> <span class="n" style="color: #333;">File</span> <span class="s2" style="color: #d14;">"./mCaller.py"</span><span class="p">,</span> <span class="n" style="color: #333;">line</span> <span class="m" style="color: #099;">59</span><span class="p">,</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">distribute_threads</span></span>
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<td class="diff-line-num old old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="mosel"> <span class="n" style="color: #333;">extract_features</span><span class="p">(</span><span class="n" style="color: #333;">tsvname</span><span class="p">,</span><span class="n" style="color: #333;">refname</span><span class="p">,</span><span class="n" style="color: #333;">read2qual</span><span class="p">,</span><span class="n" style="color: #333;">nvariables</span><span class="p">,</span><span class="n" style="color: #333;">skip_thresh</span><span class="p">,</span><span class="n" style="color: #333;">qual_thresh</span><span class="p">,</span><span class="n" style="color: #333;">modelfile</span><span class="p">,</span><span class="n" style="color: #333;">classifier</span><span class="p">,</span><span class="m" style="color: #099;">0</span><span class="p">,</span><span class="n" style="color: #333;">endline</span><span class="p">=</span><span class="n" style="color: #333;">bytesize</span><span class="p">,</span><span class="n" style="color: #333;">train</span><span class="p">=</span><span class="n" style="color: #333;">train</span><span class="p">,</span><span class="n" style="color: #333;">pos_label</span><span class="p">=</span><span class="n" style="color: #333;">training_pos_dict</span><span class="p">,</span><span class="n" style="color: #333;">base</span><span class="p">=</span><span class="n" style="color: #333;">base</span><span class="p">,</span><span class="n" style="color: #333;">motif</span><span class="p">=</span><span class="n" style="color: #333;">motif</span><span class="p">,</span><span class="n" style="color: #333;">positions_list</span><span class="p">=</span><span class="n" style="color: #333;">positions_list</span><span class="p">)</span> </span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="mosel"> <span class="n" style="color: #333;">File</span> <span class="s2" style="color: #d14;">"/home/moeller/git/med-team/mcaller/mcaller-0.0/extract_contexts.py"</span><span class="p">,</span> <span class="n" style="color: #333;">line</span> <span class="m" style="color: #099;">123</span><span class="p">,</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">extract_features</span></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">model</span> <span class="p">=</span> <span class="n" style="color: #333;">pickle</span><span class="p">.</span><span class="nf" style="color: #900; font-weight: 600;">load</span><span class="p">(</span><span class="n" style="color: #333;">modfi</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="mosel"> <span class="n" style="color: #333;">UnicodeDecodeError</span><span class="p">:</span> <span class="s1" style="color: #d14;">'ascii'</span> <span class="n" style="color: #333;">codec</span> <span class="n" style="color: #333;">can</span><span class="s1" style="color: #d14;">'t decode byte 0xb9 in position 1: ordinal not in range(128)</span></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="mosel"><span class="s1" style="color: #d14;"> moeller@steffen-laptop-debian:~/git/med-team/mcaller/mcaller-0.0$ ./mCaller.py -p testdata/test_positions_m6A.txt -r testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv -d r95_twobase_model_NN_6_m6A.pkl -f testdata/masonread1.fastq</span></span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="mosel"><span class="s1" style="color: #d14;"> testdata/</span></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="mosel"><span class="s1" style="color: #d14;"> 1 contigs</span></span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="mosel"><span class="s1" style="color: #d14;"> 1 threads</span></span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="mosel"><span class="s1" style="color: #d14;"> Traceback (most recent call last):</span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="mosel"><span class="s1" style="color: #d14;"> File "./mCaller.py", line 188, in <module></span></span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="mosel"><span class="s1" style="color: #d14;"> main()</span></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="mosel"><span class="s1" style="color: #d14;"> File "./mCaller.py", line 184, in main</span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="mosel"><span class="s1" style="color: #d14;"> distribute_threads(args.positions,args.motif,args.tsv,read2qual,args.reference,num_refs,base,mod,args.threads,args.num_variables,</span></span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="mosel"><span class="s1" style="color: #d14;"> File "./mCaller.py", line 59, in distribute_threads</span></span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="mosel"><span class="s1" style="color: #d14;"> extract_features(tsvname,refname,read2qual,nvariables,skip_thresh,qual_thresh,modelfile,classifier,0,endline=bytesize,train=train,pos_label=training_pos_dict,base=base,motif=motif,positions_list=positions_list) </span></span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="mosel"><span class="s1" style="color: #d14;"> File "/home/moeller/git/med-team/mcaller/mcaller-0.0/extract_contexts.py", line 123, in extract_features</span></span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="mosel"><span class="s1" style="color: #d14;"> model = pickle.load(modfi)</span></span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="mosel"><span class="s1" style="color: #d14;"> UnicodeDecodeError: '</span><span class="n" style="color: #333;">ascii</span><span class="s1" style="color: #d14;">' codec can'</span><span class="n" style="color: #333;">t</span> <span class="n" style="color: #333;">decode</span> <span class="n" style="color: #333;">byte</span> <span class="m" style="color: #099;">0xb9</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">position</span> <span class="m" style="color: #099;">1</span><span class="p">:</span> <span class="n" style="color: #333;">ordinal</span> <span class="k" style="font-weight: 600;">not</span> <span class="k" style="font-weight: 600;">in</span> <span class="k" style="font-weight: 600;">range</span><span class="p">(</span><span class="m" style="color: #099;">128</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> BLOCKER:</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> - installation should be done properly - needs setup.py ?!?</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> - .py in executables (secondary)</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> - README and test files does seem to be in sync with current code.</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> -- Steffen Moeller <moeller@debian.org> Fri, 04 Sep 2020 22:28:05 +0200</span></pre>
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<a href="https://salsa.debian.org/med-team/mcaller/-/commit/5116e888737a0c7c7e949822a115c456f7a31abd#a513ae7946ecc441acbe503d01f239c9b0aae70e"><strong>debian/patches/pickl3latin.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="gh" style="color: #999;">Index: mcaller/extract_contexts.py</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- mcaller.orig/extract_contexts.py</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ mcaller/extract_contexts.py</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="p">@@ -120,7 +120,7 @@</span> def extract_features(tsv_input,fasta_inp</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> if not train:</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> tsv_output = '.'.join(tsv_input.split('.')[:-1])+'.diffs.'+str(k)+'.tmp'+str(startline)</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> modfi = open(modelfile,'rb')</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- model = pickle.load(modfi)</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ model = pickle.load(modfi,encoding="latin1")</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> modfi.close()</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> if type(model) != dict:</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> model = {'general':model} #for compatibility with previously trained model</span></pre>
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<a href="https://salsa.debian.org/med-team/mcaller/-/commit/5116e888737a0c7c7e949822a115c456f7a31abd#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">shebang.patch</span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">python2to3.patch</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">pickl3latin.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/mcaller/-/commit/5116e888737a0c7c7e949822a115c456f7a31abd#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -10,5 +10,13 @@ include /usr/share/dpkg/default.mk</td>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">override_dh_auto_test:</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> ./mCaller.py -p testdata/test_positions_A.txt -r testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv -d r95_twobase_model_NN_6_m6A.pkl -f testdata/masonread1.fastq </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> ./mCaller.py -p testdata/test_positions_m6A.txt -r testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv -d r95_twobase_model_NN_6_m6A.pkl -f testdata/masonread1.fastq </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> #./make_bed.py -f testdata/masonread1.eventalign.diffs.6 -d 1 -m 0.5 </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> ./mCaller.py -p testdata/test_positions.txt -r testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv -t 4 --train -f testdata/masonread1.fastq</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">endif</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">override_dh_auto_clean:</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> dh_auto_clean</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> rm -f model_NN_6_m6A.pkl</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> rm -rf __pycache__</span></pre>
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