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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/phipack">Debian Med / phipack</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/phipack/-/commit/9c5eec0d1d17d75938db148b2fbe9dcd2e63b7a4">9c5eec0d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-09-08T22:29:16+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/phipack/-/commit/717251c0c093c698a166d2dbcab3577ccf65211b">717251c0</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-09-08T22:33:31+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix compiler variable to enable cross building
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<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#0d8181cd8c9dbe68093a8faf79725cbbd10e3e73">
<span class="new-file">
+
debian/patches/cross.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
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+
debian/salsa-ci.yml
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/phipack/-/compare/d5438353efae0fa2320ff210915aba1722bebc3c...717251c0c093c698a166d2dbcab3577ccf65211b#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">phipack (0.0.20160614-5) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Add salsa-ci file (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Fix compiler variable to enable cross building</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> Closes: #968242</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Tue, 08 Sep 2020 22:29:16 +0200</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">phipack (0.0.20160614-4) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> * Team Upload.</span>
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<li id="0d8181cd8c9dbe68093a8faf79725cbbd10e3e73">
<a href="https://salsa.debian.org/med-team/phipack/-/compare/d5438353efae0fa2320ff210915aba1722bebc3c...717251c0c093c698a166d2dbcab3577ccf65211b#0d8181cd8c9dbe68093a8faf79725cbbd10e3e73"><strong>debian/patches/cross.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">From: Helmut Grohne <helmut@subdivi.de></span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Date: Tue, 11 Aug 2020 16:10:26 +0200</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Description: Fix compiler variable to enable cross building</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Bug-Debian: https://bugs.debian.org/968242</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff">--- phipack-0.0.20160614.orig/src/Makefile</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ phipack-0.0.20160614/src/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="p">@@ -1,7 +1,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> # compiler </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#CXX = /opt/ibmcmp/vac/6.0/bin/xlc</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-CXX = gcc</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-CXXFLAGS += -O3 -Wall</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#CC = /opt/ibmcmp/vac/6.0/bin/xlc</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+CC = gcc</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+CFLAGS += -O3 -Wall</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> # target macros</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> PhiOBJ = normal.o stats.o maxChi.o main.o queue.o graphCode.o fasta.o phylip.o mem.o misc.o pairScore.o seqManip.o global.o</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="p">@@ -12,18 +12,18 @@</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> # implicit construction rule</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> %.o : %.c</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- $(CXX) -c $(CXXFLAGS) $< -o $@</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $(CC) -c $(CFLAGS) $< -o $@</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"> Phi: $(PhiOBJ) </span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- $(CXX) $(CXXFLAGS) -o Phi $(PhiOBJ) -lm $(LDFLAGS)</span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $(CC) $(CFLAGS) -o Phi $(PhiOBJ) -lm $(LDFLAGS)</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"> cp Phi ../</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"> cd ppma_2_bmp && ${MAKE}</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"> cp ppma_2_bmp/ppma_2_bmp ../</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff"> Profile: $(ProfOBJ)</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- $(CXX) $(CXXFLAGS) -o Profile $(ProfOBJ) -lm $(MYLIB) $(LDFLAGS)</span></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $(CC) $(CFLAGS) -o Profile $(ProfOBJ) -lm $(MYLIB) $(LDFLAGS)</span></span>
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38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="diff"> cp Profile ../</span>
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39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="diff"> clean : FORCE</span>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="diff"> rm -f *.o</span></pre>
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<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/phipack/-/compare/d5438353efae0fa2320ff210915aba1722bebc3c...717251c0c093c698a166d2dbcab3577ccf65211b#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">hardening.patch</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">cross.patch</span></pre>
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<li id="b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<a href="https://salsa.debian.org/med-team/phipack/-/compare/d5438353efae0fa2320ff210915aba1722bebc3c...717251c0c093c698a166d2dbcab3577ccf65211b#b1dbf22e88351ec0d5d1d1a7f53295504b480e61"><strong>debian/salsa-ci.yml</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="yaml"><span class="nn" style="color: #555;">---</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="yaml"><span class="na" style="color: #008080;">include</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml</span></span></pre>
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