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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/hmmer2">Debian Med / hmmer2</a>
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<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/hmmer2/-/commit/86446395727d3781a33e7bd62948c6d24eff0571">86446395</a></strong>
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<span>by Nilesh Patra</span>
<i>at 2020-09-09T16:09:58+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add --runstatedir to configure
</pre>
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<strong><a href="https://salsa.debian.org/med-team/hmmer2/-/commit/b4ba9315fc9ec9687c64ae7fff2df35f1592835f">b4ba9315</a></strong>
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<span>by Nilesh Patra</span>
<i>at 2020-09-09T16:11:45+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Do not install Release-Notes
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<h4>3 changed files:</h4>
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<a href="#a5cc705d84a614f7e6154a4803c92cd9fdb70510">
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−
debian/hmmer2.docs
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<a href="#eddba6d75b6038125027d8fe6be8d7f6a38e5fd6">
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+
debian/patches/add-runstatedir-option.patch
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<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="a5cc705d84a614f7e6154a4803c92cd9fdb70510">
<a href="https://salsa.debian.org/med-team/hmmer2/-/compare/d3aa566a9d27637e1c00ed3794aa63b8140a7929...b4ba9315fc9ec9687c64ae7fff2df35f1592835f#a5cc705d84a614f7e6154a4803c92cd9fdb70510"><strong>debian/hmmer2.docs</strong>
deleted
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Release-Notes</span></pre>
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<li id="eddba6d75b6038125027d8fe6be8d7f6a38e5fd6">
<a href="https://salsa.debian.org/med-team/hmmer2/-/compare/d3aa566a9d27637e1c00ed3794aa63b8140a7929...b4ba9315fc9ec9687c64ae7fff2df35f1592835f#eddba6d75b6038125027d8fe6be8d7f6a38e5fd6"><strong>debian/patches/add-runstatedir-option.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Author: Nilesh Patra <npatra974@gmail.com></span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Description: Add "runstatedir" option adopted by dh-compat 11 and above</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Last-Changed: September 9, 2020</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/configure</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/configure</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="p">@@ -273,7 +273,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> PACKAGE_BUGREPORT='eddy@genetics.wustl.edu'</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> ac_subdirs_all="$ac_subdirs_all squid"</span>
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<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir sysconfdir sharedstatedir localstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS PACKAGE_RELCODE PACKAGE_DATE PACKAGE_COPYRIGHT PACKAGE_LICENSE PACKAGE_LICENSETAG CC CFLAGS LDFLAGS CPPFLAGS ac_ct_CC EXEEXT OBJEXT RANLIB ac_ct_RANLIB AR build build_cpu build_vendor build_os host host_cpu host_vendor host_os EXEC_DEPENDENCY PVMLIBDIR PVMINCDIR PVMPROGS PVMLIBS PTHREAD_CC PTHREAD_LIBS PTHREAD_CFLAGS subdirs LIBOBJS LTLIBOBJS'</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir sysconfdir sharedstatedir localstatedir runstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS PACKAGE_RELCODE PACKAGE_DATE PACKAGE_COPYRIGHT PACKAGE_LICENSE PACKAGE_LICENSETAG CC CFLAGS LDFLAGS CPPFLAGS ac_ct_CC EXEEXT OBJEXT RANLIB ac_ct_RANLIB AR build build_cpu build_vendor build_os host host_cpu host_vendor host_os EXEC_DEPENDENCY PVMLIBDIR PVMINCDIR PVMPROGS PVMLIBS PTHREAD_CC PTHREAD_LIBS PTHREAD_CFLAGS subdirs LIBOBJS LTLIBOBJS'</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> ac_subst_files=''</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> # Initialize some variables set by options.</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="p">@@ -308,6 +308,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> sysconfdir='${prefix}/etc'</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> sharedstatedir='${prefix}/com'</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> localstatedir='${prefix}/var'</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+runstatedir='${localstatedir}/run'</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> libdir='${exec_prefix}/lib'</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> includedir='${prefix}/include'</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> oldincludedir='/usr/include'</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="p">@@ -436,6 +437,15 @@</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> | --locals=* | --local=* | --loca=* | --loc=* | --lo=*)</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> localstatedir=$ac_optarg ;;</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ -runstatedir | --runstatedir | --runstatedi | --runstated \</span></span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ | --runstate | --runstat | --runsta | --runst \</span></span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ | --runs | --run | --ru)</span></span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ac_prev=runstatedir ;;</span></span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ -runstatedir=* | --runstatedir=* | --runstatedi=* | --runstated=* \</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ | --runstate=* | --runstat=* | --runsta=* | --runst=* \</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ | --runs=* | --run=* | --ru=*)</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ runstatedir=$ac_optarg ;;</span></span>
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35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="diff"> -mandir | --mandir | --mandi | --mand | --man | --ma | --m)</span>
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37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="diff"> ac_prev=mandir ;;</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="diff"> -mandir=* | --mandir=* | --mandi=* | --mand=* | --man=* | --ma=* | --m=*)</span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="diff"><span class="p">@@ -632,7 +642,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="diff"> # Be sure to have absolute paths.</span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="diff"> for ac_var in bindir sbindir libexecdir datadir sysconfdir sharedstatedir \</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- localstatedir libdir includedir oldincludedir infodir mandir</span></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ localstatedir runstatedir libdir includedir oldincludedir infodir mandir</span></span>
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45
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="diff"> do</span>
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46
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="diff"> eval ac_val=$`echo $ac_var`</span>
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47
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="diff"> case $ac_val in</span>
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<td class="diff-line-num new new_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="diff"><span class="p">@@ -782,6 +792,7 @@</span></span>
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<td class="diff-line-num new new_line" data-linenumber="49" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
49
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="diff"> --sysconfdir=DIR read-only single-machine data [PREFIX/etc]</span>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="diff"> --sharedstatedir=DIR modifiable architecture-independent data [PREFIX/com]</span>
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51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="diff"> --localstatedir=DIR modifiable single-machine data [PREFIX/var]</span>
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52
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ --runstatedir=DIR extra definition of runtime data [LOCALSTATEDIR/run]</span></span>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="diff"> --libdir=DIR object code libraries [EPREFIX/lib]</span>
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54
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="diff"> --includedir=DIR C header files [PREFIX/include]</span>
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55
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="diff"> --oldincludedir=DIR C header files for non-gcc [/usr/include]</span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="diff"><span class="p">@@ -4487,6 +4498,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="diff"> s,@sysconfdir@,$sysconfdir,;t t</span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="diff"> s,@sharedstatedir@,$sharedstatedir,;t t</span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="diff"> s,@localstatedir@,$localstatedir,;t t</span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+s,@runstatedir@,$runstatedir,;t t</span></span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="diff"> s,@libdir@,$libdir,;t t</span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="diff"> s,@includedir@,$includedir,;t t</span>
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63
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="diff"> s,@oldincludedir@,$oldincludedir,;t t</span></pre>
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<a href="https://salsa.debian.org/med-team/hmmer2/-/compare/d3aa566a9d27637e1c00ed3794aa63b8140a7929...b4ba9315fc9ec9687c64ae7fff2df35f1592835f#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,3 +3,4 @@ userguidepdf</td>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">spelling.patch</span>
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4
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">use_debian_packaged_biosquid.patch</span>
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5
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">build_libhmmer.a_with-fPIC.patch</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">add-runstatedir-option.patch</span></pre>
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