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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/htsjdk">Debian Med / htsjdk</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/b7da9452ea2b13458bfa129d2d2d7708134e626f">b7da9452</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-09-10T17:20:43+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/e952f378e8adb9707360313e3002f0159d965007">e952f378</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-09-10T17:20:46+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.23.0+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/27d83eb5fa4c3209e10c5103b651301b0fa162a1">27d83eb5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-09-10T17:22:00+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.23.0+dfsg'
Update to upstream version '2.23.0+dfsg'
with Debian dir 3b536f1ee39e136a9a45545234092f409b623caf</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/fddf7667c5c0b401c494ee9f6f6d57c30cd9c08d">fddf7667</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-09-10T17:22:00+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/8897217601d579331cbcf2a419cbc76de9e4ddd4">88972176</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-09-10T17:22:00+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 13
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/054b0e8d6a393d281aa0aaa023be973bccc28d93">054b0e8d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-09-10T18:12:23+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/d4fbe91e0104061672dbd0f7ae57e6998426d057">d4fbe91e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-09-10T18:12:33+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">cme fix dpkg-control
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/c5d66e7ad2fc03483dc9c83778b6cf0f2b215e33">c5d66e7a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-09-10T18:12:59+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Remove trailing whitespace in debian/changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/5b17c1e66712ba5202a387fe13ed56ff6d0f801c">5b17c1e6</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-09-10T18:13:00+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/fd88982daf6e15f8f21b101da72e3eccb9ffb5b4">fd88982d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-09-10T18:13:00+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/b67fc84e28c2b3ba935cbe3e4ca2b737355ac38b">b67fc84e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-09-10T18:13:08+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.
Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-file-is-missing
See-also: https://lintian.debian.org/tags/upstream-metadata-file-is-missing.html
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html
</pre>
</li>
</ul>
<h4>25 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">
−
debian/compat
</span>
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#45a5d5d6fee92c99102cebc37efea96fcbbb35b8">
debian/patches/92-disable-testhttp.patch
</a>
</li>
<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<span class="new-file">
+
debian/salsa-ci.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
<span class="new-file">
+
debian/upstream/metadata
</span>
</a>
</li>
<li class="file-stats">
<a href="#0c2a3954cf743381ce8a0e1317b6e62af6a0ed8a">
src/main/java/htsjdk/samtools/SAMReadGroupRecord.java
</a>
</li>
<li class="file-stats">
<a href="#b90524d92db845ffdc44fb4036b462cdca874408">
src/main/java/htsjdk/samtools/seekablestream/SeekableStreamFactory.java
</a>
</li>
<li class="file-stats">
<a href="#4495f878bb604dd23a05b2fcee1ac3db69725dfd">
src/main/java/htsjdk/samtools/util/AbstractRecordAndOffset.java
</a>
</li>
<li class="file-stats">
<a href="#c70635c9ef6082a34412457d97489b17f389857b">
src/main/java/htsjdk/samtools/util/EdgeReadIterator.java
</a>
</li>
<li class="file-stats">
<a href="#3ae3bb0dbd07714c834165b2262e7aa13b68b384">
src/main/java/htsjdk/tribble/gff/Gff3BaseData.java
</a>
</li>
<li class="file-stats">
<a href="#f228d77b7001337a8efbaa51d6ae1d2b5d9bbe91">
src/main/java/htsjdk/tribble/gff/Gff3Codec.java
</a>
</li>
<li class="file-stats">
<a href="#dfce4ffb3a1d133c703cbfb224f30134ecf1189a">
<span class="new-file">
+
src/main/java/htsjdk/tribble/gff/Gff3Constants.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#6009bf7933bd3830438251405e12f7c06706a33c">
src/main/java/htsjdk/tribble/gff/Gff3Feature.java
</a>
</li>
<li class="file-stats">
<a href="#d5edaff2d21f164c06bc04f7f283b8519a2c8b33">
src/main/java/htsjdk/tribble/gff/Gff3FeatureImpl.java
</a>
</li>
<li class="file-stats">
<a href="#e33a0aae49e8b0170d9f31fb3b7ef43e3009ee86">
<span class="new-file">
+
src/main/java/htsjdk/tribble/gff/Gff3Writer.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#b26fc598540e9735f61e9f86c84128f8627f11c9">
src/main/java/htsjdk/tribble/gff/SequenceRegion.java
</a>
</li>
<li class="file-stats">
<a href="#2d96d25af432d1095fdbd32854a25c31c66f2325">
src/test/java/htsjdk/samtools/BAMCigarOverflowTest.java
</a>
</li>
<li class="file-stats">
<a href="#5b4570f46b312c742b2e912f85abea1445f2e782">
src/test/java/htsjdk/samtools/seekablestream/SeekableStreamFactoryTest.java
</a>
</li>
<li class="file-stats">
<a href="#1861d34b5532f3335bd511b8360927bf4e25aa22">
src/test/java/htsjdk/samtools/util/EdgeReadIteratorTest.java
</a>
</li>
<li class="file-stats">
<a href="#a17da38c80a59399fc4b129280b496262494f8de">
src/test/java/htsjdk/samtools/util/EdgingRecordAndOffsetTest.java
</a>
</li>
<li class="file-stats">
<a href="#c4e666afe9a8a27ef8a0d806459c6dc4743280fe">
src/test/java/htsjdk/tribble/gff/Gff3CodecTest.java
</a>
</li>
<li class="file-stats">
<a href="#0534955e09d57007692832ec185fc1f11a28fe3e">
src/test/java/htsjdk/tribble/gff/Gff3FeatureTest.java
</a>
</li>
<li class="file-stats">
<a href="#91a22cc7444ec114c52b00c33c6763cd0ae320f3">
<span class="new-file">
+
src/test/java/htsjdk/tribble/gff/Gff3WriterTest.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#52acdacaac7a320e7643b1b2f5c37b2e78913351">
src/test/java/htsjdk/variant/vcf/VCFFileReaderTest.java
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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