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<h3>

Andreas Tille pushed to branch upstream

at <a href="https://salsa.debian.org/med-team/htsjdk">Debian Med / htsjdk</a>

</h3>

<h4>

Commits:

</h4>

<ul>

<li>

<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/e952f378e8adb9707360313e3002f0159d965007">e952f378</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2020-09-10T17:20:46+02:00</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.23.0+dfsg</pre>

</li>

</ul>

<h4>19 changed files:</h4>

<ul>

<li class="file-stats">

<a href="#0c2a3954cf743381ce8a0e1317b6e62af6a0ed8a">

src/main/java/htsjdk/samtools/SAMReadGroupRecord.java

</a>

</li>

<li class="file-stats">

<a href="#b90524d92db845ffdc44fb4036b462cdca874408">

src/main/java/htsjdk/samtools/seekablestream/SeekableStreamFactory.java

</a>

</li>

<li class="file-stats">

<a href="#4495f878bb604dd23a05b2fcee1ac3db69725dfd">

src/main/java/htsjdk/samtools/util/AbstractRecordAndOffset.java

</a>

</li>

<li class="file-stats">

<a href="#c70635c9ef6082a34412457d97489b17f389857b">

src/main/java/htsjdk/samtools/util/EdgeReadIterator.java

</a>

</li>

<li class="file-stats">

<a href="#3ae3bb0dbd07714c834165b2262e7aa13b68b384">

src/main/java/htsjdk/tribble/gff/Gff3BaseData.java

</a>

</li>

<li class="file-stats">

<a href="#f228d77b7001337a8efbaa51d6ae1d2b5d9bbe91">

src/main/java/htsjdk/tribble/gff/Gff3Codec.java

</a>

</li>

<li class="file-stats">

<a href="#dfce4ffb3a1d133c703cbfb224f30134ecf1189a">

<span class="new-file">

+

src/main/java/htsjdk/tribble/gff/Gff3Constants.java

</span>

</a>

</li>

<li class="file-stats">

<a href="#6009bf7933bd3830438251405e12f7c06706a33c">

src/main/java/htsjdk/tribble/gff/Gff3Feature.java

</a>

</li>

<li class="file-stats">

<a href="#d5edaff2d21f164c06bc04f7f283b8519a2c8b33">

src/main/java/htsjdk/tribble/gff/Gff3FeatureImpl.java

</a>

</li>

<li class="file-stats">

<a href="#e33a0aae49e8b0170d9f31fb3b7ef43e3009ee86">

<span class="new-file">

+

src/main/java/htsjdk/tribble/gff/Gff3Writer.java

</span>

</a>

</li>

<li class="file-stats">

<a href="#b26fc598540e9735f61e9f86c84128f8627f11c9">

src/main/java/htsjdk/tribble/gff/SequenceRegion.java

</a>

</li>

<li class="file-stats">

<a href="#2d96d25af432d1095fdbd32854a25c31c66f2325">

src/test/java/htsjdk/samtools/BAMCigarOverflowTest.java

</a>

</li>

<li class="file-stats">

<a href="#5b4570f46b312c742b2e912f85abea1445f2e782">

src/test/java/htsjdk/samtools/seekablestream/SeekableStreamFactoryTest.java

</a>

</li>

<li class="file-stats">

<a href="#1861d34b5532f3335bd511b8360927bf4e25aa22">

src/test/java/htsjdk/samtools/util/EdgeReadIteratorTest.java

</a>

</li>

<li class="file-stats">

<a href="#a17da38c80a59399fc4b129280b496262494f8de">

src/test/java/htsjdk/samtools/util/EdgingRecordAndOffsetTest.java

</a>

</li>

<li class="file-stats">

<a href="#c4e666afe9a8a27ef8a0d806459c6dc4743280fe">

src/test/java/htsjdk/tribble/gff/Gff3CodecTest.java

</a>

</li>

<li class="file-stats">

<a href="#0534955e09d57007692832ec185fc1f11a28fe3e">

src/test/java/htsjdk/tribble/gff/Gff3FeatureTest.java

</a>

</li>

<li class="file-stats">

<a href="#91a22cc7444ec114c52b00c33c6763cd0ae320f3">

<span class="new-file">

+

src/test/java/htsjdk/tribble/gff/Gff3WriterTest.java

</span>

</a>

</li>

<li class="file-stats">

<a href="#52acdacaac7a320e7643b1b2f5c37b2e78913351">

src/test/java/htsjdk/variant/vcf/VCFFileReaderTest.java

</a>

</li>

</ul>

<h5>The diff was not included because it is too large.</h5>

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