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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/kaptive">Debian Med / kaptive</a>
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Commits:
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<strong><a href="https://salsa.debian.org/med-team/kaptive/-/commit/7505cc6b9d615269323acd6a88eb407a1f15b2a6">7505cc6b</a></strong>
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<span>by Iain Lane</span>
<i>at 2020-09-04T18:16:36+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/patches/blastdb_4: Pass "-blastdb_version 4" to makeblastdb to work properly on 32 bit systems
Fixes autopkgtest failure, and possibly a runtime failure too
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<h4>2 changed files:</h4>
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debian/patches/blastdb_4
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debian/patches/series
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<h4>Changes:</h4>
<li id="445dc5f4ea12fe531d286492c98964dd7440e228">
<a href="https://salsa.debian.org/med-team/kaptive/-/commit/7505cc6b9d615269323acd6a88eb407a1f15b2a6#445dc5f4ea12fe531d286492c98964dd7440e228"><strong>debian/patches/blastdb_4</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: Pass "-blastdb_version 4" to makeblastdb to work properly on 32 bit systems</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Author: Iain Lane <laney@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff">--- kaptive-0.7.0.orig/kaptive.py</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ kaptive-0.7.0/kaptive.py</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="p">@@ -1797,7 +1797,7 @@</span> def makeblastdb(fasta):</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> gunzip.stdout.close()</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> _, err = makeblastdb_process.communicate()</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> else: # plain text</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- makeblastdb_command = ['makeblastdb', '-dbtype', 'nucl', '-in', fasta]</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ makeblastdb_command = ['makeblastdb', '-blastdb_version', '4', '-dbtype', 'nucl', '-in', fasta]</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> makeblastdb_process = subprocess.Popen(makeblastdb_command, stdout=subprocess.PIPE,</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> stderr=subprocess.PIPE)</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> _, err = makeblastdb_process.communicate()</span></pre>
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<a href="https://salsa.debian.org/med-team/kaptive/-/commit/7505cc6b9d615269323acd6a88eb407a1f15b2a6#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">blastdb_4</span></pre>
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