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<h3>
Étienne Mollier pushed to branch master
at <a href="https://salsa.debian.org/med-team/python-biopython">Debian Med / python-biopython</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/python-biopython/-/commit/f2babc28481c3a29407222251743c51ad0701664">f2babc28</a></strong>
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<span>by Étienne Mollier</span>
<i>at 2020-09-14T21:29:49+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">blastdbv4-tests-filter-archs.patch DEP3 header
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<h4>2 changed files:</h4>
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<a href="#7da704709b4a6546301e4eb1a49247877bac9a6c">
debian/patches/blastdbv4-tests-filter-archs.patch
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/python-biopython/-/commit/f2babc28481c3a29407222251743c51ad0701664#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">python</span><span class="p">-</span><span class="n" style="color: #333;">biopython</span> <span class="p">(</span><span class="m" style="color: #099;">1.78</span><span class="p">+</span><span class="n" style="color: #333;">dfsg</span><span class="p">-</span><span class="m" style="color: #099;">2</span><span class="p">)</span> <span class="n" style="color: #333;">UNRELEASED</span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="mosel"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Added</span> <span class="n" style="color: #333;">DEP3</span> <span class="n" style="color: #333;">description</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">blastdbv4</span><span class="p">-</span><span class="n" style="color: #333;">tests</span><span class="p">-</span><span class="n" style="color: #333;">filter</span><span class="p">-</span><span class="n" style="color: #333;">archs</span><span class="p">.</span><span class="n" style="color: #333;">patch</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="mosel"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="mosel"> <span class="p">--</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">É</span><span class="n" style="color: #333;">tienne</span> <span class="n" style="color: #333;">Mollier</span> <span class="p"><</span><span class="n" style="color: #333;">etienne</span><span class="p">.</span><span class="n" style="color: #333;">mollier</span><span class="p">@</span><span class="n" style="color: #333;">mailoo</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">></span> <span class="n" style="color: #333;">Mon</span><span class="p">,</span> <span class="m" style="color: #099;">14</span> <span class="n" style="color: #333;">Sep</span> <span class="m" style="color: #099;">2020</span> <span class="m" style="color: #099;">21</span><span class="p">:</span><span class="m" style="color: #099;">28</span><span class="p">:</span><span class="m" style="color: #099;">54</span> <span class="p">+</span><span class="m" style="color: #099;">0200</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="mosel"></span>
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="mosel"><span class="n" style="color: #333;">python</span><span class="p">-</span><span class="n" style="color: #333;">biopython</span> <span class="p">(</span><span class="m" style="color: #099;">1.78</span><span class="p">+</span><span class="n" style="color: #333;">dfsg</span><span class="p">-</span><span class="m" style="color: #099;">1</span><span class="p">)</span> <span class="n" style="color: #333;">unstable</span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="mosel"></span>
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Bumped</span> <span class="n" style="color: #333;">build</span> <span class="n" style="color: #333;">requirement</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">ncbi</span><span class="p">-</span><span class="n" style="color: #333;">blast</span><span class="p">+</span> <span class="m" style="color: #099;">2.10.0</span><span class="p">-</span><span class="m" style="color: #099;">3</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">greater</span><span class="p">,</span></span>
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<li id="7da704709b4a6546301e4eb1a49247877bac9a6c">
<a href="https://salsa.debian.org/med-team/python-biopython/-/commit/f2babc28481c3a29407222251743c51ad0701664#7da704709b4a6546301e4eb1a49247877bac9a6c"><strong>debian/patches/blastdbv4-tests-filter-archs.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: fall back makeblastdb wrapper test to v4 on unsupported archs</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"> While makeblastdb -blastdb_version 5 is gaining stable support, under some</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"> architectures, it is still necessary to fall back to -blastdb_version 4 to be</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"> able to run the test. This patch implements a way to select a list of</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"> architectures to run with a blastdb v4.</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> .</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> Note: it is expected that Biopython 1.79 might test both blastdb v4 and v5.</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"><span class="p">Author: Étienne Mollier</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="p">Bug-Debian: https://bugs.debian.org/969608</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="p">Forwarded: no</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="diff"><span class="p">Last-Update: 2020-09-13 18:18:22 +0200</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-biopython.orig/Tests/test_NCBI_BLAST_tools.py</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-biopython/Tests/test_NCBI_BLAST_tools.py</span></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="diff"><span class="p">@@ -16,6 +16,12 @@</span></span>
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