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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/beast2-mcmc">Debian Med / beast2-mcmc</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast2-mcmc/-/commit/48d9c0045fcd814d1ed74ed11f8fb474be508f6d">48d9c004</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-09-15T08:13:56+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast2-mcmc/-/commit/67ed24e81873e041ee80b7e8bea631f7aa85cb39">67ed24e8</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-09-15T08:13:58+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.6.3+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast2-mcmc/-/commit/8061dc8b4f0fa2e8c5b37f96dc696098929fdcbe">8061dc8b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-09-15T08:14:21+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.6.3+dfsg'
Update to upstream version '2.6.3+dfsg'
with Debian dir 4ec45e43cd1ef36bacd60f709dfc95bb829d1d15</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast2-mcmc/-/commit/2d1c373bb7849d1617fba3922f95d3364db99763">2d1c373b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-09-15T08:14:21+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast2-mcmc/-/commit/907438bbb5fe806dc25b67c297f61a69b28110d1">907438bb</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-09-15T08:14:21+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 13
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast2-mcmc/-/commit/d37671387ea690fb642caf2a64e0df7263006f32">d3767138</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-09-15T08:15:33+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast2-mcmc/-/commit/3a4a7463e7fdeb46506c1bfeb36832aa05e1461a">3a4a7463</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-09-15T08:15:43+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast2-mcmc/-/commit/5529720329d9c9524dd37df14ad240cf4213bfd8">55297203</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-09-15T08:15:44+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast2-mcmc/-/commit/23828050c7830f446583658777800256762afeb6">23828050</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-09-15T08:15:44+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast2-mcmc/-/commit/8a868d2dd0db499bff444aa80f69a672c3755767">8a868d2d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-09-15T08:15:47+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use secure URI in Homepage field.
Changes-By: lintian-brush
Fixes: lintian: homepage-field-uses-insecure-uri
See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast2-mcmc/-/commit/98151f7c6e58952310a65305316015b227ca4962">98151f7c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-09-15T08:15:53+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.
Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#bdc348bf75801c527f51cdeddc8edf027f7ef35a">
build.xml
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#813b27b9f0bc72fb1563e5dcf1ce715410cb3747">
debian/patches/antlr-compatibility.patch
</a>
</li>
<li class="file-stats">
<a href="#60bc9af5ec216f8a84f4c14ada50ecf18d619e42">
debian/patches/fix_classpath_in_build_xml.patch
</a>
</li>
<li class="file-stats">
<a href="#5c5b9c6960ee9ecac6229e8f51023781864b8fcb">
debian/patches/remove_appbundler.patch
</a>
</li>
<li class="file-stats">
<a href="#47ab0b4b827e3fe75b18b0fb2004a0b5b99671fe">
debian/patches/remove_mac_only_code.patch
</a>
</li>
<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<span class="new-file">
+
debian/salsa-ci.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
debian/tests/run-unit-test
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
</a>
</li>
<li class="file-stats">
<a href="#45ef874408462ccca68c2e1c43f6d6ae2eeb6f5f">
<span class="new-file">
+
examples/parameterised/README.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#84e60b0ccb3019c48454641193e9b9af6935e93f">
<span class="new-file">
+
examples/parameterised/RSV2.json
</span>
</a>
</li>
<li class="file-stats">
<a href="#b699b97b29ce77557afc4ae27063d38c76c8b914">
<span class="new-file">
+
examples/parameterised/RSV2.xml
</span>
</a>
</li>
<li class="file-stats">
<a href="#44fe1266025a7421bb739d13caa7d53002ecf5d4">
examples/testUCLNclock.json
</a>
</li>
<li class="file-stats">
<a href="#8f664e2d2009a3cd20b47579df7825a0bbbfd6c3">
release/Linux/bin/applauncher
</a>
</li>
<li class="file-stats">
<a href="#6c49fe986d915bedf0717ee5e595caf50f577f91">
release/Linux/bin/beast
</a>
</li>
<li class="file-stats">
<a href="#a4b53cf3d8bd6040af7d857c817c824332f1d380">
release/Linux/bin/beauti
</a>
</li>
<li class="file-stats">
<a href="#b63290f486c46509c6e1c919514bbfe7e74c4130">
release/Linux/bin/densitree
</a>
</li>
<li class="file-stats">
<a href="#24288bfcbf228898d61e515b5f80c784bd0965ba">
release/Linux/bin/loganalyser
</a>
</li>
<li class="file-stats">
<a href="#268236a1fa4e6ae4a2ef19b81049335446a3c67a">
release/Linux/bin/logcombiner
</a>
</li>
<li class="file-stats">
<a href="#cc2b9d8d31b21e7be6d454ce3cbef5c56d49d092">
release/Linux/bin/packagemanager
</a>
</li>
<li class="file-stats">
<a href="#fb81f11d5f340467d6331904a7ca185a04a71c18">
release/Linux/bin/treeannotator
</a>
</li>
<li class="file-stats">
<a href="#63fcbed0ee47ada1ebdf9861fb9a6e51f1945839">
release/Linux/jrebin/applauncher
</a>
</li>
<li class="file-stats">
<a href="#92aa38a325322114627d8f7ae3d6edf8d674a6d0">
release/Linux/jrebin/beast
</a>
</li>
<li class="file-stats">
<a href="#7c3565858028f0122e0497b2d69642bf06abd759">
release/Linux/jrebin/beauti
</a>
</li>
<li class="file-stats">
<a href="#76520bda8bcaf00d53c6e6bd2a56cb4b19103752">
release/Linux/jrebin/densitree
</a>
</li>
<li class="file-stats">
<a href="#42d0196b1c032810f920025eed25667a64ff356d">
release/Linux/jrebin/loganalyser
</a>
</li>
<li class="file-stats">
<a href="#2a0a04c6778b492bae605ec7bd97b475a9b29f98">
release/Linux/jrebin/logcombiner
</a>
</li>
<li class="file-stats">
<a href="#522585b616a4dfec8146d5805d82cbd38bf7b28e">
release/Linux/jrebin/packagemanager
</a>
</li>
<li class="file-stats">
<a href="#6807ed61382bf6299bbf862428fb393bb7f526c6">
release/Linux/jrebin/treeannotator
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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