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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/kaptive">Debian Med / kaptive</a>
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<h4>
Commits:
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<ul>
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<strong><a href="https://salsa.debian.org/med-team/kaptive/-/commit/91392e72ce7b72cd7c1d5203bc599c36695cf55a">91392e72</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-09-15T07:31:40+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use single threaded mode in autopkgtest to work around bug #970344
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<strong><a href="https://salsa.debian.org/med-team/kaptive/-/commit/9016f99454f81635cc160d916ce5d658cadaa7d8">9016f994</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-09-15T08:05:58+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
debian/tests/run-unit-test
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/kaptive/-/compare/5244f37e31e5276803be7af791794b887fb17b84...9016f99454f81635cc160d916ce5d658cadaa7d8#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">kaptive (0.7.3-1) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">kaptive (0.7.3-1) <span class="idiff left right">unstable</span>; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> [ Iain Lane ]</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * debian/patches/blastdb_4: Pass "-blastdb_version 4" to makeblastdb to work</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,8 +12,9 @@ kaptive (0.7.3-1) UNRELEASED; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> * Rules-Requires-Root: no (routine-update)</span>
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<td class="diff-line-num old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> * Install wrapper script created by debhelper</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> * Override dh_missing to ignore egg-info</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> * Use single threaded mode in autopkgtest to work around bug #970344</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> <span class="idiff left right">Sun, 13 Sep 2020 07:09:12</span> +0200</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> <span class="idiff left right">Tue, 15 Sep 2020 07:31:47</span> +0200</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">kaptive (0.7.0-2) unstable; urgency=medium</span>
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<td class="diff-line-num new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"></span>
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<li id="8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
<a href="https://salsa.debian.org/med-team/kaptive/-/compare/5244f37e31e5276803be7af791794b887fb17b84...9016f99454f81635cc160d916ce5d658cadaa7d8#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f"><strong>debian/tests/run-unit-test</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -14,5 +14,6 @@ cd "${AUTOPKGTEST_TMP}"</td>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="shell"><span class="nb" style="color: #0086b3;">gunzip</span> <span class="nt" style="color: #000080;">-r</span> <span class="k" style="font-weight: 600;">*</span></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="shell"><span class="nb" style="color: #0086b3;">set</span> <span class="nt" style="color: #000080;">-x</span></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="shell">kaptive.py <span class="nt" style="color: #000080;">-a</span> exact_match.fasta <span class="nt" style="color: #000080;">-k</span> /usr/share/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span>/reference_database/Klebsiella_k_locus_primary_reference.gbk <span class="nt" style="color: #000080;">-o</span> output/test</span></pre>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"FIXME: Due to bug #970344 we are using single threaded mode (-t 1) here."</span></span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="shell">kaptive.py <span class="nt" style="color: #000080;">-t</span> 1 <span class="nt" style="color: #000080;">-a</span> exact_match.fasta <span class="nt" style="color: #000080;">-k</span> /usr/share/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span>/reference_database/Klebsiella_k_locus_primary_reference.gbk <span class="nt" style="color: #000080;">-o</span> output/test</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"FIXME: Make sure to remove '-t 1' from the kaptive call once bug #970344 is fixed."</span></span></pre>
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