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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/kaptive">Debian Med / kaptive</a>
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Commits:
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<strong><a href="https://salsa.debian.org/med-team/kaptive/-/commit/2be57b96a8671bebd6597f2fa3d27769b578df3c">2be57b96</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-09-21T07:57:10+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Removed workaround with singlethread mode in autopkgtest since bug #970344 was resolved
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<h4>2 changed files:</h4>
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
debian/tests/run-unit-test
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/kaptive/-/commit/2be57b96a8671bebd6597f2fa3d27769b578df3c#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">kaptive (0.7.3-2) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Removed workaround with singlethread mode in autopkgtest since</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> bug #970344 was resolved</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Mon, 21 Sep 2020 07:56:29 +0200</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">kaptive (0.7.3-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> [ Iain Lane ]</span>
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<li id="8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
<a href="https://salsa.debian.org/med-team/kaptive/-/commit/2be57b96a8671bebd6597f2fa3d27769b578df3c#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f"><strong>debian/tests/run-unit-test</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -14,6 +14,4 @@ cd "${AUTOPKGTEST_TMP}"</td>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="shell"><span class="nb" style="color: #0086b3;">gunzip</span> <span class="nt" style="color: #000080;">-r</span> <span class="k" style="font-weight: 600;">*</span></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"FIXME: Due to bug #970344 we are using single threaded mode (-t 1) here."</span></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="shell">kaptive.py <span class="nt" style="color: #000080;">-t</span> 1 <span class="nt" style="color: #000080;">-a</span> exact_match.fasta <span class="nt" style="color: #000080;">-k</span> /usr/share/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span>/reference_database/Klebsiella_k_locus_primary_reference.gbk <span class="nt" style="color: #000080;">-o</span> output/test</span>
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<td class="diff-line-num old old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"FIXME: Make sure to remove '-t 1' from the kaptive call once bug #970344 is fixed."</span></span></pre>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="shell">kaptive.py <span class="nt" style="color: #000080;">-a</span> exact_match.fasta <span class="nt" style="color: #000080;">-k</span> /usr/share/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span>/reference_database/Klebsiella_k_locus_primary_reference.gbk <span class="nt" style="color: #000080;">-o</span> output/test</span></pre>
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