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<h3>
Steffen Möller pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/bcbio">Debian Med / bcbio</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/-/commit/74736a56004d953bcc8498226f6e1f9b00168bda">74736a56</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-09-26T00:55:46+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.2.4</pre>
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</ul>
<h4>30 changed files:</h4>
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<a href="#a03585ab89eed5e0782a1875b2d8153b97865d30">
.github/ISSUE_TEMPLATE/bug_report.md
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<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
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<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
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<li class="file-stats">
<a href="#d30b04166486087de34ff05cf278d3dd2ddd2360">
HISTORY.md
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<a href="#880a33829d0929ef6c5bb535e6f72195c0d9b644">
scripts/vm/Vagrantfile
→
Vagrantfile
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<li class="file-stats">
<a href="#059a93c69080af2f6054c5324203b7af73cc5b83">
bcbio/bam/__init__.py
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<li class="file-stats">
<a href="#182fba4769123c455cd02418f79d193a381ad1c4">
bcbio/bam/fastq.py
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<li class="file-stats">
<a href="#fb17eef4888c4f7198909ebc1616eb92a3fed380">
bcbio/chipseq/__init__.py
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<li class="file-stats">
<a href="#e058999dc6b36492007fce47afb7a70ca8b25e3d">
bcbio/chipseq/atac.py
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<li class="file-stats">
<a href="#fbfb96675c481efdacfedf0214b473e7d623d79c">
bcbio/chipseq/peaks.py
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<li class="file-stats">
<a href="#2d356a30008ed932f27e4ace4ff645a2231fa5de">
bcbio/cwl/create.py
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<li class="file-stats">
<a href="#690db16c036f1205639dceeba6880c6afd278b24">
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bcbio/data/umis/qiaseq-upx-384-cb1.txt.gz
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bcbio/data/umis/qiaseq-upx-384-transform.json
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<a href="#9c49d18da0de54639962834f68a63c6923abd01b">
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bcbio/data/umis/qiaseq-upx-96-cb1.txt.gz
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<a href="#538459167de46b855ccc1c878a3aced753f7aaab">
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bcbio/data/umis/qiaseq-upx-96-transform.json
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<li class="file-stats">
<a href="#911a1520d19a460146d2a13f06313e889177f30d">
bcbio/distributed/ipythontasks.py
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<li class="file-stats">
<a href="#09d9e862a036e6807e58c2decc710d701ffc3ece">
bcbio/distributed/multitasks.py
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<li class="file-stats">
<a href="#fee19f4f498a2b34eca43fa79376fa526f252577">
bcbio/heterogeneity/chromhacks.py
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<li class="file-stats">
<a href="#21de3916271e785a8f3265ee5ad39597e376e1fe">
bcbio/hla/optitype.py
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<li class="file-stats">
<a href="#cb1999524a51a97bd40da890cd301d883550f995">
bcbio/install.py
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<li class="file-stats">
<a href="#df11eaca928825aa93db95fe7b7adf1aa7c3e786">
bcbio/ngsalign/bismark.py
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<li class="file-stats">
<a href="#037a5da84cee54d04c6672861c844615a844912f">
bcbio/ngsalign/bwa.py
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<li class="file-stats">
<a href="#bbb7842f2be9690f4ae67a1de2c07f322d6e261e">
bcbio/ngsalign/star.py
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<li class="file-stats">
<a href="#fb1771124cfd58b2bad95a99b8cf42f0adde9eee">
bcbio/pipeline/alignment.py
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<li class="file-stats">
<a href="#3bc78861325eafbcc6318a5fe975950a26142070">
bcbio/pipeline/datadict.py
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<li class="file-stats">
<a href="#6b0954b64bb7025f3d13cbef18622daa684dbe1a">
bcbio/pipeline/main.py
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<li class="file-stats">
<a href="#37887cb2aa9aaaab061447bcf9b787795063503d">
bcbio/pipeline/qcsummary.py
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<li class="file-stats">
<a href="#fac91f905233560f253b7063f3b6889aeca3af62">
bcbio/pipeline/sample.py
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<li class="file-stats">
<a href="#85d06fa335415666c32065e161f62b08957235b4">
bcbio/qc/atac.py
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<h5>The diff was not included because it is too large.</h5>
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